Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_08g0024120 OGI:08078130 | 14/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr08:28996730-29003714
Gene Symbol -
DNA seq

tagcatcaacataatccattaaaatgcattaagtataacagaaccccccaaaaagtatcaagcaaacaacgTttattcAtatacatgtatggtggtgaatggctagtagttcttgtgagctactgctactaaccggTggagaGtttctccataggaaaatgccttatcaagagaaaaaaaaaagtagtttacactgccatctatttggatatcagagtgccacgtcacctggagaatggagatgacctctcatatttctgaacagaagcatgtatacatgcaaacgtgtctataagggtttctagttctacaacctttcatctatgagaaatataggttctataaacacaaagcccttggttttaagggtggaacatcactattctatgttctgaatatatcttgtgcttgtgtctgtcaaggcacctgggataactggtcttgttatcatccacagcttgggacacagtgcaccttgctctcttttcacaatcttctgcacctaccagccatgcacaatttgtatgccccttcagtctaaaagttcaatccaTctgaattctgaacccttgcaccatcaatcaagctcgaatcgtccaagctgaagtcttggtagtcaagcagccagtctgttgtgcttccatcccatgctgactgcttaacgatgccactgaagtcatcttcattgctgctagtaaaatttagccatggctcgtcagctgGAAgctctgcctccaacagccagttcaccaatgggtccAggccatgactgctggtgttcctgcttgactgctccatcgagtctgtgggcactgacatgtccctgctgcagcctccctcgggatcgaacggatatgccatgccatttgacttggctgattcggttgtggcagtggacagcgtggaggttcttgtttggctaaccaccttggtgttgggcagaggctgatgtgtggctgggtcgatgcccatcttgatgagcttcttcttgatgtgcgtgttccaatggttcttgatctcgttgtctgttctccctggtaatttggcGgcgatcttggaccatctgtgtacggatacaaggtatcaagaatcaagagtaatgaaaatggtaatgttattccagtaaaaaaatatggtaatgttatcttctttgtgcaaggaaccgaaagggtgaaaaagacaagccattcgaccaatttcaagtattttcccagtttgctaatgaaagcagtgtattcgatatcatgtttcaacaTtttttgcactaagctaggttgattacgacatgattggtgctatcacttttactttgtagcctttgaattgttctatttctttctctctctggttcatctacataacatatggaggttacatcaacataacatttgtcggtttagagggcaataacaaaacaagcattactattccattattcttttgagtcacattagcatcattgtaatgaccaaaggcacggaacaataaatcaacaacagaggttacagagaagaagataataaaaggaacaagaatcactcattcaggacctagtgaaataatgacatgcaaaacccacgggttaattaactgtcAaaaatgtcgaacgctgatacagttgcacttagacagctaacagtaagtttttagaagatatgaggtcctattatcagcaatttcctttccagatagattattctaagcagttccaacaaaaatgttaaccaagggtagcttactctcagtatataaggacttgtttcattctaaacaaagtactaatagTttttagataagcttgtagtgattaatagtcatggaggcagactggaggtttgagatttgacaaggataccGTgtgcatatgactttgacgctcttggttaaattcagctggttgagtattgggcacatatagtcatttgctaattagttgtatacaaaaataatctcaattattttgttgggacgccaatactgatattagatagcaatctgtcatactatctatgctcctttactttcagctttagaaattgatatgatctgtagcacacaccttcgaccatcattttttctcaatcaagatttcaagtataattatacgaagaagttacatgaaaaattaaaaATctagtaatctcattttgaaataacaaatccaaacagtttgatgcatattagtggtcaaagctttatgagtttgatccataaaagAaacagagggagtgatgtatcactatgcatcttgtaataattaataaatgcatgcatgcatacatcatgttttttgttcatatacatagtAAACatactacaagttaagtgctcatacgatctttagaaacacAaatgcactgcttctaaagcataccaagagattgatatgtaactacacactgctacatacacgatgCAcacactaactgcatgcaatttggtttttgagaagcatggtggcaccactgctcattaacatgaagttttgctttacctatattccgtttttcctggatgcttctaaacttaatcaaaaggaattcactcatgggttcatgcccaggaatgcatgcagatagcattttctagcatAGCaggaggcagatggatcaacatatgagatgccctacatgcaagcttataagcgtgctacaatatatcatatcatatcatgagatatccatgcaagtaggcgtacctgttaccaagcttggcatggaggtccacaacaagctgctcctcgtctgcggtgaggaggccacgcttgaggtcagggcggagatagttggtccAccgcaaccggcagctcttgccacagcgcagcagccctgccaacttaggcactgctcgccagcagcagcggccatgtgtcaggatgaaactgatgagcttcttgtcctcctctgccgtccatggccccctcttcaccttcttcttgtcacagcacggctgcctccccatttgctagttactgcagacttgcaccagatagatggaatcctgtataaaatgaacacttataaatttctagtgcttgcacatgtccagtgagctgcaaaactcctgtgcacaagcgtcagatgaaagggtggtgacagctctgttgcaactgcaattggtgtctgtgcttgcatatttataggtcagctcctcacttcctcagtttctcgAaaaaaatgtgtctttcatgaattttgtgtGgtggtgatgatgatttggcttaatttagtgtgcttagaaagcaaggcctcaatccgtgctacagtagacttgcacccaaaaatccacatatatgcattgctgcaacgtggtgcatctacagtttagttgttgatcgaatttacAaattaagtataaaaaatatgtactattttattagcacaacagcaatttggtcgcacatgatgctacaggaaactcagatgtgattttctctggaatgaagttgcattttaactagtatttttaaagcttttgctgctttcatttcccacaaggctacacatttatgctgcctttgctacccacctatgtagccatttcgtcatcagctgtgaactatagctaactgctaaccaaagtaccaaaccatttgagGAgcccccctaacttcatgtgattgctgtgagctgtaactcatcgtatggaccagaataatgactttgagcacatggtggtgtatattttgctacagtaatatgtagaaaaataatcacgatcagtgactccagtggtgaaaaTTGtcatacaagatacaggcaatttaggatgtcatagcactgaatttcatgacatcagctttcagtaggcaagaactcaaccaagtgatttcttctggcatacatgtacaggtgcaaattgTttttctagggcttgttcggttaataccgaagaggaagggattggaggggattaattccacacctcaataggtgtggaacaaatCccctctaattccccttcaatccccttctaagagggattaactgagcaaagccttaaggaaccaatgctaagtcTGttggGGAaaaaaattacaagtatacctggggctgggacatactttgtcaatagcaacactgaagatggaaagagtcacaaacatAaaaatatcaaccatgtcatatatcagcttcctcgaatatgcaattactcatttactttacgatcaaccagaaaaggctagcctccaaTAGCtctgccgatatctaggcattaaagcatatcaggaaaaacagtaactaattgatttgagttgagaaaacagtgcccaccatcagtaactttcaagtaccctgttccatcaaacaactgattcaatgtgcaagataactgattattttgtagcaggatacaaaatggaaaactagtgaactatgaactgtatgatctaggcatctaaccacactcttcagatcctactcaccacaggaacgggaaaagaaatggaTaattgtaccttcacccagaaatgacagcaagggatagcttattatctgtgggcacacaacagaatctgccgacatGAAgaagaaaatgaccttgtgctgtaacaagataacaatgtcaacttggtgatacatactttggagtattgatgtaagaaggggacattcaatcaatcAatcagcaagcttgtaaccaagctatctattagtagatgtaagatttacatgtgtacttagaatgttgaaaccaagctcattgtgtattttctggaagtcatactccagatttcaagaagtgatatataaaactacaaaaagtgagaacaaactcttgagaaaacatatgcttaggaaacaaacactctgtaaggaatgcaTCtgttgtatatttacacccagtgccgttgcatgtttctgagatgaaacagtaaataaacgtagcttttagaagaaggaaactcccatcatcatGGgggtaaTtttctttctagtcggttggtctattccatcctgccttccactatctgtagtctgtactagttagaaccaatggactgcatttctagatgagaagatttagctgacatcatccagttggtattatcatgcaaaattggtcctgAaaaaaactaaacaggagggattatctgggaatagtaacttcaacatttttctcttgtttttccccctcttatgtgagaggggtagttgattattcagtgcccaacttcaagcaagcttgtacagtaggacttagtgggagGTCTgtgtgtcctttcagtataacttctggctgcttacctgaagctctgactataccttgacaggataggaagatattactaaaagaacAAgtgacattatctatatatgaggtcatttaataatAaaaacccttcaaaattacatgtgcatgtaagtgagactaccaatatttaggctcctcagtcctcaccaacccatctgagttacagctttcaagtaaaagacctgacactttcaagtccgtaccatgattctccaatggttgagctagtcaatgttatagataagatcacatagaagtaaccactgagctaccatctcgtgtttgtgcagtaaccactaaccaacaggctcatgattccattaaaatgcaaggttttagacagattacatggatttggtatacattcgatggatatggttagttgattactgcTCAtgtaacggaggtggctagcttttaaaatgcatgAaaaagagaatgggtctagtatttccatcactacatcagctaaatgcactgaataacaacctggattaccaaccttccagctaagaaaacgcgtaatcgatgccgcttaacattaaaggtactcttgattagagggtaattTAtatatttaggttttgaatattgatcttcatggccactttgcgttttgaactaaggtaccctcagtaaggtatccctcttgctttatttagcaattagcacaatgactttctgAaaaggttgaaagAaatgactgggcttaaaggaaaatgttgtgcctgcctcttcagacAaaaatataattaaaaaatgctaggaaatgtagcttgtctacctacaaaatcatccaagattgatcactctatctgacagataatgagagcatggaattagttctagcaggctgtaccaacggcatatgcatgacaaattggcaatgctaatagtaagctaacaattagaactggaatgctcctcttgttcattcattggcatcgttcccgagtacgacccaacgcagcatggagatcttgtgtgcattcctcgattcagtctcaagctatattgttgccgatgctgaattacatgagcacacggaagtattggtcttccaagatatcatcataagacaaaagtaccagaagaagggactagactgtacagaacctacaccctcatgggtccttgctgcaaccaaactctacgacttcgcgtatctgttcatgtcattgcagaggactactactgaaggttgcaaggtgtttcacatattgtcattcacatataacaacacttcactaaaaactagtgtgagaggagacacatgcctctaaatttggcctacatcaaagttgttcttccacccccaaaatcaacatgcAtcgatcggttcatctcatggggggacaagacaagggcgacgcattcagatattgcgaccatgtgtgtcagtaagacaagcaagtatacccaccaagatcgcggcaagatcggaaagctagggcacggatcgcagcgaggagatgtgtacaggagactagaaagcgaagcgagcaaaagtgcagtggaatctttggttggtaatggacggaacgggcgcacactgaccgagcggaggcgcggacttcgccgaggtggcggtgacggcgacctcgcAccctttcccttcccccaccaccggaggaggaaggggagggcgccgtcggaggggagggcgtacggcccGcgcttggaaggggacgccattgacgagggcgcaacacaacagtgcgttggatgg

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CDS seq

atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggTggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgcCgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcaaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggccTggacccattggtgaactggctgttggaggcagagcTTCcagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcttggacgattcgagcttgattgatggtgcaagggttcagaattcagAtggattgaacttttag

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Protein seq

MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSLDDSSLIDGARVQNSDGLNF

Function Protein ODORANT1 [UniProtKB/Swiss-Prot:Q50EX6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0024120 OsNaBo_08g0024120.02 Chr08 28996730 29003635 - NAM
CDS seq

atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggTggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgcCgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcaaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggccTggacccattggtgaactggctgttggaggcagagcTTCcagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcttggacgattcgagcttgattgatggtgcaagggttcagaattcagAtggattgaacttttag

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Protein seq

MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSLDDSSLIDGARVQNSDGLNF

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0024120 OsNaBo_08g0024120.01 Chr08 28996730 29003714 - NAM
CDS seq

atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggTggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgcCgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcaaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggccTggacccattggtgaactggctgttggaggcagagcTTCcagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcttggacgattcgagcttgattgatggtgcaagggttcagaattcagAtggattgaacttttag

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Protein seq

MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSLDDSSLIDGARVQNSDGLNF

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OsNaBo_08g0024120.02OsNaBo_08g0024120.01AS28997000 bp28998000 bp28999000 bp29000000 bp29001000 bp29002000 bp29003000 bp29004000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr08 29001276 29003543 - OsNaBo_08g0024120.02 OsNaBo_08g0024120.02,OsNaBo_08g0024120.01 All

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 0.932876

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0548000 RBH 0.0 0.0 0.341893
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g43450 RBH 0.0 0.0 0.128112
Nipponbare | IRGSP 1.0 | RAP-db Os08g0548000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0024500 RBH 0.0 10.780577 0.755009
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0024280 RBH 0.0 0.633763 0.569717
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0024280 RBH 0.0 5.308245 1.178402
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0024610 RBH 0.0 0.227989 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0024250 RBH 0.482869 0.000000 6.137151
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0329000 SBH 1.4769045 0.148857 0.575356
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0024090 RBH 0.0 0.337380 0.376238
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0350700 SBH 1.4665425 0.233385 0.280128
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0023460 RBH 0.0 0.216851 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0023820 RBH 0.200716 3.596476 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0023640 RBH 0.0 7.516965 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0024520 RBH 0.0 0.395101 0.959206
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0023740 RBH 0.0 1.641618 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G023960 RBH 0.0 1.281798 1.209692
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0017750 RBH 0.0 4.686695 20.260443
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Huazhong Agricultural University

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