Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g43450 | OGI:08078130 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:27486168-27488798 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGCATCAACATAATCCATTAAAATGCATTAAGTATAACAGAACCCCCCAAAAAGTATCAAGCAAACAACGTTTATTCATATACATGTATGGTGGTGAATGGCTAGTAGTTCTTGTGAGCTACTGCTACTAACCGGTGGAGAGATTCTCCATAGGAAAATGCCTTATCAAGAGAAAAAAAAAAGTAGTTTACACTGCCATCTATTTGGATATCAGAGTGCCACGTCACCTGGAGAATGGAGATGACCTCTCATATTTCTGAACAGAAGCATGTATACATGCAAACGTGTCTATAAGGGTTTCTAGTTCTACAACCTTTCATCTATGAGAAATATAGGTTCTATAAACACAAAGCCCTTGGTTTTAAGGGTGGAACATCACTATTCTATGTTCTGAATATATCTTGTGCTTGTGTCTGTCAAGGCACCTGGGAGAACTGGTCTTGTTATCATCCACAGCTTGGGACACAGTGCACCTTGCTCTCTTTTCACAATCTTCTGCACCTACCAGCCATGCACAATTTGTATGCCCCTTCAGTCTAAAAGTTCAATCCATCTGAATTCTGAACCCTTGCACCATCAATCAAGCTCGAATCGTCCATGCTGAAGTCTTGGTAGTCAAGCAGCCAGTCTGTTGTGCTTCCATCCCATGCTGACTGCTTAACGATGCCACTGAAGTCATCTTCATTGCTGCTAGTAAAATTTAGCCATGGCTCGTCAGCTGGAAGCTCTGCCTCCAACAGCCAGTTCACCAATGGGTCCAGGCCATGACTGCTGGTGTTCCTGCTTGACTGCTCCATCGAGTCTGTGGGCACTGACATGTCCCTGCTGCAGCCTCCCTCGGGATCGAACGGATATGCCATACCATTTGACTTGGCTGATTCGGTTGTGGCAGTGGACAGCGTGGAGGTTCTTGTTTGGCTAACCACCTTGGTGTTGGGCAGAGGCTGATGTGTGGCTGGGTCGATGCCCATCTTGATGAGCTTCTTCTTGATGTGCGTGTTCCAATGGTTCTTGATCTCGTTGTCTGTTCTCCCTGGTAATTTGGCGGCGATCTTGGACCATCTGTGTACGGATACAAGGTATCAAGAATCAAGAGTAATGAAAATGGTAATGTTATTCCAGTAAAAAAATATGGTAATGTTATCTTCTTTGTGCAAGGAACCGAAAGGGTGAAAAAGACAAGCCATTCGACCAATTTCAAGTATTTTCCCAGTTTGCTAATGATAGCAGTGTATTCGATATCATGTTTCAACATTTTTTGCACTAAGCTAGGTTGATTACGACATGATTGGTGCTATCACTTTTACTTTGTAGCCTTTGAATTGTTCTATTTCTTTCTCTCTCTGGTTCATCTACATAACATATGGAGGTTACATCAACATAACATTTGTCGGTTTAGAGGGCAATAACAAAAACAAGCATTACTATTCCATTATTCTTTTGAGTCACATTAGCATCATTGTAATGACCAAAGGCACGGAACAATAAATCAACAACAGAGGTTACAGAGAAGAAGATAATAAAAGGAACAAGAATCACTCATTCAGGACCTAGTGAAATAATGACATGCAAAACCCACGGGTTAATTAACTGTCAAAAATGTCGAACGCTGATACAGTTGCACTTAGACAGCTAACAGTAAGTTTTTAGAAGATATGAGGTCCTATTATCAGCAATTTCCTTTCCAGATAGATTATTCTAAGCAGTTCCAACAAAAATGTTAACCAAGGGTAGCTTACTCTCAGTATATAAGGACTTGTTTCATTCTAAACAAAGTACTAATAGTTTTTAGATAAGCTTGTAGTGATTAATAGTCATGGAGGCAGACTGGAGGTTTGAGATTTGACAAGGATACCGTGTGCATATGACTTTGACGCTCTTGGTTAAATTCAGCTGGTTGAGTATTGGGCACATATAGTCATTTGCTAATTAGTTGTATACAAAAATAATCTCAATTATTTTGTTGGGACGCCAATACTGATATTAGATAGCAATCTGTCATACTATCTATGCTCCTTTACTTTCAGCTTTAGAAATTGATATGATCTGTAGCACACACCTTCGACCATCATTTTTTCTCAATCAAGATTTCAAGTATAATTATACGAAGAAGTTACATGAAAAATTAAAAATCTAGTAATCTCATTTTGAAATAACAAATCCAAACAGTTTGATGCATATTAGTGGTCAAAGCTTTATGAGTTTGATCCATAAAAGAAACAGAGGGAGTGATGTATCACTATGCATCTTGTAATAATTAATAAATGCATGCATGCATACATCATGTTTTTTGTTCATATACATAGTAAACATACTACAAGTTAAGTGCTCATACGATCTTTAGAAACACAAATGCACTGCTTCTAAAGCATACCAAGAGATTGATATGTAACTACACACTGCTACATACACGATGCACACACTAACTGCATGCAATTTGGTTTTTGAGAAGCATTGTGGCACCACTGCTCATTACCATGAAGTTTTGCTTTACCTATATTCCGTTTTTCCTGGATGCTTCTAAACTTAATCAAAAGGAATTCACTCATGGGTTCATGCCCAGGAATGCATGCAGATAGCATTTTCTAGCATAGCAGGAGGCAGATGGATCAACATATGAGATGCCCTAT
More
|
||||||||||
| CDS seq | ATGGGCATCGACCCAGCCACACATCAGCCTCTGCCCAACACCAAGGTGGTTAGCCAAACAAGAACCTCCACGCTGTCCACTGCCACAACCGAATCAGCCAAGTCAAATGGTATGGCATATCCGTTCGATCCCGAGGGAGGCTGCAGCAGGGACATGTCAGTGCCCACAGACTCGATGGAGCAGTCAAGCAGGAACACCAGCAGTCATGGCCTGGACCCATTGGTGAACTGGCTGTTGGAGGCAGAGCTTCCAGCTGACGAGCCATGGCTAAATTTTACTAGCAGCAATGAAGATGACTTCAGTGGCATCGTTAAGCAGTCAGCATGGGATGGAAGCACAACAGACTGGCTGCTTGACTACCAAGACTTCAGCATGGACGATTCGAGCTTGATTGATGGTGCAAGGGTTCAGAATTCAGATGGATTGAACTTTTAG
More
|
||||||||||
| Protein seq | MGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDGLNF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g43450 | LOC_Os08g43450.1 | Chr08 | 27486168 | 27488798 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCATCGACCCAGCCACACATCAGCCTCTGCCCAACACCAAGGTGGTTAGCCAAACAAGAACCTCCACGCTGTCCACTGCCACAACCGAATCAGCCAAGTCAAATGGTATGGCATATCCGTTCGATCCCGAGGGAGGCTGCAGCAGGGACATGTCAGTGCCCACAGACTCGATGGAGCAGTCAAGCAGGAACACCAGCAGTCATGGCCTGGACCCATTGGTGAACTGGCTGTTGGAGGCAGAGCTTCCAGCTGACGAGCCATGGCTAAATTTTACTAGCAGCAATGAAGATGACTTCAGTGGCATCGTTAAGCAGTCAGCATGGGATGGAAGCACAACAGACTGGCTGCTTGACTACCAAGACTTCAGCATGGACGATTCGAGCTTGATTGATGGTGCAAGGGTTCAGAATTCAGATGGATTGAACTTTTAG
More
|
|||||||
| Protein seq | MGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDGLNF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.128112 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0548000 | RBH | 0.0 | 0.0 | 0.341893 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0548000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024500 | RBH | 0.0 | 10.780577 | 0.755009 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024280 | RBH | 0.0 | 0.633763 | 0.569717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024280 | RBH | 0.0 | 5.308245 | 1.178402 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024610 | RBH | 0.0 | 0.227989 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024250 | RBH | 0.482869 | 0.000000 | 6.137151 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024090 | RBH | 0.0 | 0.337380 | 0.376238 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023460 | RBH | 0.0 | 0.216851 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023820 | RBH | 0.200716 | 3.596476 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023640 | RBH | 0.0 | 7.516965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024520 | RBH | 0.0 | 0.395101 | 0.959206 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023740 | RBH | 0.0 | 1.641618 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023960 | RBH | 0.0 | 1.281798 | 1.209692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024120 | RBH | 0.0 | 0.000000 | 0.932876 |
