Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0017670 | OGI:09061460 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:21877888-21883781 | ||||||||
| Gene Symbol | OsMYB42/85, MYB42/85, OsMYB85, MYB85 | ||||||||||
| DNA seq | gttctaaaaaatagattcactaattaagtaaagtaagcaacacacgtgcatgctttgcacataagaatgtaccctacaatatctgaactcattagcagcacatacaccattgtatatatacacaaactagtgagctaatattattgtacattactcacccacatcttttattgaaaacatgtataggtactacaccaacaaatagttctatctctccaaaaaaaaaacaaagatctaagtatctccatttgagaagtaataacacttctagttaatggcacaaaCccccgaatcaatctcaaggggaaaatacacaacaacatgcaccatctacgcataccctctctcaaatgcatcaatcccaaccgttgattggttttccgaagagcaaaggcctcgacttgtgatcaccctccgatcttggccggccatgcctagctgctttcacaatcttgatgtttttattaattatacacttcacttgattatctacactgatagcaacacaattaagtaagctgctgacatcttctagctagaagttggacccatttgagctgttgaccatggaggcatcgaccaccaagctcgagtctcccatcccaaaatcttggtagtcgagcagccagtccgtcgtcatgccgacgtcccacggcagcgccggcgtggcgccggtggcggcgatgctactgaactcgtcgacgtcgttgctggccgtgaaattgagccatggctcgtcgccggtgggcagcaggtcctcttccagcagccacttcaccagagggtcctggtgatggctactgctgctgctgctactgccaccggcggtgctggcggtgttagtgctcgactccggcgggctgtcgccaccggcagacacggacaTGtccctgacgacggcgtcgtcaagctgccggctttgctgcctggtcgcctcgccggacttggacgactccgccgtgacggtggactgcgaggtggtggccgggctctcctgcttccggtcgaggggctcgtgcgtcaccgggtcgatgcccatcttgatgagcttcttcttgatgtgcgtgttccagtggttcttgatctcgttgtccgtcctgcccggtagcttggcagcaatcttggaccatctgcatagacacaattaacatcaacaatagaaaagtagtagtgattaagtttgtactagtagtaattctcacggagacatcatgcatacgtgcatgcttaagtaagaatgaaaattatttactgatgggaatgtttacgtagcacacgactgaaaaaaaaggaataatgtcaatttcgtaacagtagttaatttggatggagaaaccagttggtgatttcagccgggtgcgctatgcattcacttttaattagatagatagaaataaaaaaagcaattcatccttgtcaatcattttcgcaggtaccccggcttgctgatgaaacattgaaaccgcatggaattaccatttctacaccatggaataaatggtgcagatgcctgttctgttaatcattagagtttgagggagacatggaagtatgatgactgaccAaactttactttctccataaTttactgcctaggagcatttcttatgcaagtttttacatagccgtgaaaacatgccaccactttcataagcaaatagaaatattttactgatttgaagcgcaactctcaattaactagagatcacaacccatctctatctcatttgtttctttaagctatctaaggagtagccttttaattaagagtgacaaaacaacaaaggggttggtagtgtactttttaaaaagctttcttccattttccaatgaggcaactggacctaagaggatgctttcTatttctgaatcaacgtgtagggttctcttagccacagaaatcaagctagtGggagccagcgctctagaatgcacatcaagaaagtgaaacaagaaatttccaatgttcttctgcgagactattttccatggctacgaaattgtatgccacttggacaccatataacagctaaggatatagagttcagcggttgtgtctaagagctgtcatagaaaggcttttgtgctactctctagtttacaaggagcatatctaatatgtgtaaacccataattaattcagtgttgacataaaaaaatcaaaacaataaataagtaacattaaatttggagaaagaaaatattgtggatctcattgtgtagtacagtccttttgtttcttctacattttttttcaaaacatcggtatcagttggtacgacagtgatttgcacaaaaaTtagctatcttctgccaaaaGTaaaagtaggcacttaattaattctccataacagggaccacaattaagcatgttcatacttggctaatcttgtacatctCccctccatcattgagaaactaatacacgcatgtgttgtttgatgtttcctcgtactatggcaataggtcaccagcatgtcatatgcttctcctaccagtgtggtgctatcttttttaaaaaaaaactttacaaatctggaagtaattatattattaTttttttgctccaaattagattatttattaaatttccattttagttgattgaagaattgtgtgcttaatttttcttaAGagcattacatgatggaatcaagtgctgttcaaactccaatAaatagcttctactatctaatatataactcatcagattcttctaataaagaatctaaacaatgaatgaattgcaagcggccagtcacttgtaatttctttacaatattgttctttgggtttaaattaactgttgggcttacaatattgttctttgggtttaaattaacaaaagcaagctagctaggtcaacagtgcgcaactacaattatcgtcgttttgcacacttctagtttttcctatcagatagctggcatataattaacttttgctataaagaaaatgcatacgtgctaacctcgtgtttggtttggatcatacaaaacaaagatagatagaaaatagtgtgattctagataaggttttccattctgtcttctccacgttatatctatgcatggcgatcgaaagttctagattctgactggccggccttcaccagtgtagaaagtctcgtttcttaaatggatttctcgtgcaagtagggttactatgtgctactgctaaatattccaagctatgttttgtctccttcaaagcaagaaacaagtaatccacaccttagacagcgacatgaaatgcatgcgagttagaggccagagtctacccttaatttggctgctaacctgtgatggttacattagggagttttcttccatggttttaccaaccagtggacagtaattcgtacgtttgatcctgtgtgttgacaaggaacgtacctacgcgctaatccatgggattaattacttcatcgtatactgggtaagatactttcttggcgacgtagtacacatggagacaagtctgctagcttgcgtatgacagcagtagtagtagtgatgaaggtttacgtacctacgtgaccgtgatgtcacgtacatgtaagcgctatatacacttatttaattagttcacatgagtgattgacgacctatgagcttcattgtcaaagtactgtaatttggtggctttgcgacctcacacattgatgacagccacacatgtcgtcagtcgtcttcgtatcaaataatgggcatgcaggtagctaacatacagtactagtagtagttctctcaatttcttggaccttattaaattactatacggtgttagttattaccgctatcaaactgctagtactactgagctttttaatgatctactcctatttgtatagagagttaatccagctctatccacatcaaaatcctatatggttacccggcaaaagaaaatcctatatggtttaagatggcacagtgcatatgcatgaaaaatctattagcgtttgtatgcatgcatttgcgtgtgtgggctagacgaggtagagcaagtaacgtagGTgtgtgtatatgcatggagaagggggtacctgttgccgagcttggcgtggaggtcgatgacgagctgctcctcggcgtcggtgaggaggccgcgcttgaggtcggggcggaggtagtttgtccaccggaggcggcagctcttgccgcagcggagcagcccggcgagcttcggcacggcgcgccagcagcaatggccgttggtcaggatgaagctcatcagcttcttgtcctcctccgccgtccacggccccctcttcacccccagcttgtcgcagcacggctgcctccccatcctttatatatacacacgtactgctcctcctccgctgccggtgatcgccgccgggaaagtcgaccacggcgagctggagccgctgctgtttcgaataggcagaggcgaggcaggttaagttaattgattagctaggcgtgcatcaaagcaaagggggtgggggcgtgaaaagtgcctcgcaactgcaaccggagcgtgcgggtggaagggcgtatatatagctaggccctcctgctccaagctctttttaatctccggtgatggcgacggcggcgacggaggcagctcgctgacttagctgcgcccacaaggctaaacaccaccaccacttgcagtgctgcacacacacaaaaaaaagaagagattttgatacgtgtagagggctcaaggagtagtttgcggcttgtgtcgcacacctgcatgcaCcccgcccggcctggagactgttcctcgatcgacgctctcctgagaaagaaagagtaagagatcaatatgtcaagatacattggtacagtctcaagctctcacgcactcttaagggaaaaagtgactttccagatgatgctacagagcttgcacgttaactttggtgcgttatcgatggatgaaaatgatttttatggtaattattcaacataataaaaaaataaactattgattaaaaatagttctctgaaatattgatggaaaaagtttctataaaactcataccgtttagaaatactagtaaactaagtaaacatgctcacaataatccataatctgtaagctaccgagaatgccccttgaaagatcgattaaattattattacactaatcctccttccgtaacttcttagaatttttttctcaaatataacaacatagtAaaaggtgatttttattactgaactatccttagttatattatcgtccaactaatccagacctataggctataccaccacacaacctttactcctcctttaatagctgtgtaaatggttaaaacttattatattttGggacggagataatattattttattttcttaattttgcatcgatctcaaggcatgttggatggtagatcaatcgtttacctctgcttcaataagctgctgcatccgcgcgctgcaaattaagatttcctttttcagagggtaagtgtaaacatcagcaataacgtacctccaccacacaaaagctacagtccggtgtcgctgaaggctttgccacttccgttccccacgggtgcatgtctgcctgcccgcccaccttgccgtggttgcgcccttacgcaatgatcccatcaaccattccgtcagccacAaaaaaccacggccccggcagaacaggcatgcaaagtggtagatgcaatgcaagcctgcaactcgcagcgctcagcatgcagcccagccaacctcctcggagcaagtggcatcgtcgtcgacgtcgtagacggtcgccatgagcaagcaacctcgctcagccgtgtgtccagatggccggaacgggtacatgctttgtacgacggcgacctctggcccgggaaagaagactcgacgaaccacagctgcagccagacaacgtctcgtgtcagc
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| CDS seq | atggggaggcagccgtgctgcgacaagctgggggtgaagagggggccgtggacggcggaggaggacaagaagctgatgagcttcatcctgaccaacggccattgctgctggcgcgccgtgccgaagctcgccgggctgctccgctgcggcaagagctgccgcctccggtggacaaactacctccgccccgacctcaagcgcggcctcctcaccgacgccgaggagcagctcgtcatcgacctccacgccaagctcggcaacagatggtccaagattgctgccaagctaccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccggtgacgcacgagcccctcgaccggaagcaggagagcccggccaccacctcgcagtccaccgtcacggcggagtcgtccaagtccggcgaggcgaccaggcagcaaagccggcagcttgacgacgccgtcgtcagggaCAtgtccgtgtctgccggtggcgacagcccgccggagtcgagcactaacaccgccagcaccgccggtggcagtagcagcagcagcagtagccatcaccaggaccctctggtgaagtggctgctggaagaggacctgctgcccaccggcgacgagccatggctcaatttcacggccagcaacgacgtcgacgagttcagtagcatcgccgccaccggcgccacgccggcgctgccgtgggacgtcggcatgacgacggactggctgctcgactaccaagattttgggatgggagactcgagcttggtggtcgatgcctccatggtcaacagctcaaatgggtccaacttctag
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| Protein seq | MGRQPCCDKLGVKRGPWTAEEDKKLMSFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTDAEEQLVIDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLDRKQESPATTSQSTVTAESSKSGEATRQQSRQLDDAVVRDMSVSAGGDSPPESSTNTASTAGGSSSSSSSHHQDPLVKWLLEEDLLPTGDEPWLNFTASNDVDEFSSIAATGATPALPWDVGMTTDWLLDYQDFGMGDSSLVVDASMVNSSNGSNF |
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| Function | Protein ODORANT1 [UniProtKB/Swiss-Prot:Q50EX6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0017670 | OsLima_09g0017670.01 | Chr09 | 21877888 | 21882384 | - | NAM | ||
| CDS seq | atggggaggcagccgtgctgcgacaagctgggggtgaagagggggccgtggacggcggaggaggacaagaagctgatgagcttcatcctgaccaacggccattgctgctggcgcgccgtgccgaagctcgccgggctgctccgctgcggcaagagctgccgcctccggtggacaaactacctccgccccgacctcaagcgcggcctcctcaccgacgccgaggagcagctcgtcatcgacctccacgccaagctcggcaacagatggtccaagattgctgccaagctaccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccggtgacgcacgagcccctcgaccggaagcaggagagcccggccaccacctcgcagtccaccgtcacggcggagtcgtccaagtccggcgaggcgaccaggcagcaaagccggcagcttgacgacgccgtcgtcagggaCAtgtccgtgtctgccggtggcgacagcccgccggagtcgagcactaacaccgccagcaccgccggtggcagtagcagcagcagcagtagccatcaccaggaccctctggtgaagtggctgctggaagaggacctgctgcccaccggcgacgagccatggctcaatttcacggccagcaacgacgtcgacgagttcagtagcatcgccgccaccggcgccacgccggcgctgccgtgggacgtcggcatgacgacggactggctgctcgactaccaagattttgggatgggagactcgagcttggtggtcgatgcctccatggtcaacagctcaaatgggtccaacttctag
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| Protein seq | MGRQPCCDKLGVKRGPWTAEEDKKLMSFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTDAEEQLVIDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLDRKQESPATTSQSTVTAESSKSGEATRQQSRQLDDAVVRDMSVSAGGDSPPESSTNTASTAGGSSSSSSSHHQDPLVKWLLEEDLLPTGDEPWLNFTASNDVDEFSSIAATGATPALPWDVGMTTDWLLDYQDFGMGDSSLVVDASMVNSSNGSNF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0017670 | OsLima_09g0017670.02 | Chr09 | 21878033 | 21883781 | - | IsoSeq | ||
| CDS seq | ctgacacgagacgttgtctggctgcagctgtggttcgtcgagtcttctttcccgggccagaggtcgccgtcgtacaaagcatgtacccgttccggccatctggacacacggctgagcgaggttgcttgctcatggcgaccgtctacgacgtcgacgacgatgccacttgctccgaggaggttggctgggctgcatgctgagcgctgcgagttgcaggcttgcattgcatctaccactttgcatgcctgttctgccggggccgtggtttttTgt
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| Protein seq | LTRDVVWLQLWFVESSFPGQRSPSYKACTRSGHLDTRLSEVACSWRPSTTSTTMPLAPRRLAGLHAERCELQACIASTTLHACSAGAVVFC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084233 | 0.417929 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532900 | RBH | 0.209251 | 0.173150 | 7.886511 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36250 | RBH | 0.104561 | 0.106649 | 1.652809 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017570 | RBH | 0.0 | 1.662945 | 13.932179 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017670 | RBH | 0.0 | 1.959308 | 2.116318 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017880 | RBH | 0.0 | 4.830564 | 5.505991 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017630 | RBH | 0.0 | 0.036456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017770 | RBH | 0.662973 | 6.546178 | 43.064564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350500 | RBH | 5.9030315 | 13.57047 | 3.373282 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017610 | RBH | 0.059601 | 0.148700 | 1.701648 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338700 | RBH | 8.484959 | 11.795748 | 8.2151955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023460 | RBH | 0.0 | 0.216851 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017450 | RBH | 0.112359 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017470 | RBH | 0.0 | 15.869522 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017390 | RBH | 0.349433 | 0.0 | 2.280091 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017530 | RBH | 0.299091 | 2.634582 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017920 | RBH | 0.198838 | 1.128000 | 4.783356 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017750 | RBH | 0.0 | 4.686695 | 20.260443 |
