Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0013020 | OGI:08048990 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:17189817-17197958 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatttatctagtgttgggttagttgatgccgaggggatatctgaaattcctcttgcaggatcagctggggctggctgtgcttttttctgtttctttctactctgcttcatagctgctaagtcatcagtcattgagctcatacgctgtagagccatacggtaggctttctcgttgcttgatgcatcttttgcaatctgtgtaaattttgtgcacagattggtatacctgattagcttcagagattcagggggcaattgcatttgttcaccaatgcttgtaactggaggcaattcaggctctttaaccatcgtccatctagccaatatgtagtgttctggaatgtcactcacttggcccacaaaatcagatgtcatcacctgcatggaaaaaaacatgttttattacctgccaaaagtacttaatgcataagaagtaatttaatgcacattaagaagtaacttaatgtgcagtgagaagtagcttaatgcacagtgagaagtagcttactgcaataacagactgttaccttcagaacatgacagcaaagaatgccatccctttcgaacttacagcattcacaattgtatatcctgtccaacacatttgcagctacaatgaatccccttgatccataattcctaacaggacctccattcggttctactagatacatgttttcagaagttcgggtcaatttatatgatgttgaagcaataagctctttttgaaatctgttgaatataggccttgtgtagacctccaatgcttttgtttccatgggatagttagcccacatagaagggattgtttcttctgcttcaaactcattctgatctgttgcaacagtgattttttcttgaatcttcttgtactgcaaaaagaagttgtatatgctgttttggggatttacatagcgcttcagcactgcgttaaatccctcactctatgctgtagtctggaggaaagggaagaaacagtgcataaagtatgctaggacccaacactgtcttatttcccaaaggtgtcggaagtgctcattatcttgtaaatgatatgttgtcaacattgcatcccatttagcatcaaactcttgctctgtccagctattgtcaaggcagtcattgaatgcatcacacaatgctttgtcatgatctaatatatggccaatcttcttctgagcattctgcattatatgccagcggcagttgcgatgcttagcatgcgggaaaactagcgctatagcttccttcatagctaggtcttgatcagttattatgtttgtgggctctacaccttccatagcctctagaaatgcttgaaacaaccatacaaaggtttctgtcttttcattccttagaaatccacaacccagctgaatatcaaaaataatacacataaggaagtcagtacagttttgaaggaagtaagttactacaattttgcgtagtctgtacagtttgtgtttgctggaagtaaatctgtacaattttgaactatagaacaaacactaaaaatgtaacttgtaaacttagttacttttttaccttttttttttaaaaaaaatgtaacttcacattctattggaagtaacttttatcaggacttgatgtaactcaatgaatgcaacaagtaacttatgatgtactataatgtacaaagttattatagattttttagaattacttttttgcaaaaaaaaaaggagtacctgtattgattgcccatgtctgtttatcccaatgaatggtgcacaaggcatgttatacatgtttgtcatgtatgtgcaatcaaacgagatgcaatctttgaagtctttgtaggcatttcttgctgctccatcaacacaggtactcgagagaagaatattggagacattgctaggcctttagccaacttcagcctgagatgtgcctgtcaaaccactcgaaggcggcgaccagatgtgttacacattcaggagacttgacaaaaatagctaaagatctacaacatctcaaatattcttaactcatactcatgtgaatctagttcccaagatgtgcactagattcacactttcatctcaagcatgattatacatagcaaacacaaataagatgaaagcgattataaactacatctactttagttacattggccgaccggccaaataaatatatagaacagcggaagcttgtctacccaatccacaagcacaccgactaggggtttaccccattaagttcaagtcctagaagaagcagtcgatcacccgcatcacttaaaggctaagtctaaatcctgcaagcaaaaggttaattccacagcaagagtcagtacattattaaaaataatgtactggcaagcaccaagacaagcctaagaccctacttgcaaggcatatactcagggaaggcataatatggttctttttagcatagagcaagttttatttgcataaaacatttccaaatcaggtttactttcaaataaatttcagcaagctagttcttgacatattgggcatcaaaataagcattaatcatgtataaatatgcacctcattgccttccatggcagcaaggagatcattctcaaatctcatcacaatttgaaggtaaatttcagcatttagaagaataaacacaagtctatactcaatatatatccacacgccgctcatgaccgcgagcacggctaatcgattagttttaactctgcagagtctgtacactttacccacatctttacccacatgatgcgaaataataatcatgcaagagcatggcacgcgatacataagtacccgatttattacccgcaacaaagcttttccaaaattcatgatttagccttacaccagcacgatacgtgttactccatcctaagccatacacgttatatgacctagaaccgttaagtggcgggcccacgccttaaacttaacgccgtggtggcggacacaacgggaacccaccacgtggcacaataccgttatattggacacgcttagtcacctaaactaccacttcggggtaaataggaagctcctctgaattatacgaactcatacacaccggcctactagaatgtaaggctaaaccataaataatttactaagcttgggctatcccatactagcacatgtggttgtactgtatacgaaatgaactgacattgagtgaagtccttaggtcagtttgggcgcactctccccctatcggtacacaactaatcaccatatgtgcaccacttgaggcccaaacctaaaatccatgttttccaccattttatttatcaaaatcacaagtattaaagttctgtccagattaattaaaaatcaattttcatgtttgtattgagcccataatgacaaggaagaccattctaagcatggctaagctttatagtaacctagtgtcaccaaaactcatatataaagtggtatagtcatattgttcctaaggttaggaatgagtaatatggatatatgtggagttaaggtgataatgcaaataataggagtttatctaacaagtttaacaaaattttaatttattagtgtacaatcgacatgcaagatttgcaaacattttcaataacctccaaaacataggttcaaagtgatcaaagagagggaggtgggacttgccttgcaactggaaaatgtcaacacctaaatcacttcttcaccgattaagcaatcatctatacaaagtacacgttatgcaattaaacaccgaaatatgcgaaaaatccaaaatgttctaaaatgcatgatttgtgcacagcgaataggtactggtctaaaattaatttaggtgaaagaatttctattttatctcattttatttgggagttatgaattttagaagtttcgtcggtacagtataggatttacttagttactgttgtgaaatgctgttgtaaggtgattcttattaagtttatgtttgctgaggtgaagatatgtgttttctaagactaacacatttggtttcataatttttagagttaatatgaattctttatgtattttacaagttataacgtgttataggtgtataatgttctataggttcatggctttagaggtttaggtctagaacttgccttatctagctagtgatgtataaaatgagtattttagttaactaatccaaccttagttcataggcttatggtctttattatcatggttcatattttataaactaggggagctctagtccatgttagcaatttattatatcaacctagaaattattatatgagctaagtgccttaagttttggtggatggggatagaactatgcattcactggtctaacagttttatttgggtttcattatagctagagtgtatttctatatacatttatatatatacatattgctcaatcgatactatgtgattagcacctatcctataaatttaaagtttagagctataacctgtacagaaggttccatattttattttactatgttgaagcccactgtttgctggttctatagatatttggttcacttcatttagactaaagatgaattttctacaaattttacaatttaaggttgctctatgatggttattacttacataagtatttagaggcttttatcatacagtaagtatataattttattttataacttggaagtatatgttttggtgattctacagaacttgggtttactcaaaaaggatctaagatgaattttatatgaacttctaaaattcagcttatctaaaactaatcatttaaaggtaatagttttagaggcatttgatgtatagtatgtatactatttcattttgctttataggagaaaataagttgatggatctgtagaaactgagtttgctccaaaatgagttgaaatgaattttgtatgcattttatatgtttgtgcatgctttatgtgtgatttaacttggataaattttagaggctaaatttgtactgtgagtgcaagtttttattccataacatcaaagttctcaatttggtgatttcacagaaatttgaatcatcttaaaatgagctatatttaattttatatggattttacaagttttagttactgttcttttataatttcagattttgttcctaggggtgtctcaggccaatatgcaaaaaggcccctagggtttcaggaaatcaacccgcagtcctatgaatgttctgtgtgtcttgatcttttgcataaagagccctacattaacctaaattcttgtgaggaggtccctggttcgagctgaagcagatcaagccatggctgagctcgatctcaagcttgccagcggcaaacggtggctcgtttgagggtgcgaccaaaagacaaaatgaagatcatgctattgcgattccattcctctacttttcttggtcagtggacatcggagtaacgccggcggcgagtccgagcggcggctgtgcttaggctgctactgcatgttgagttggtgctcgattctaagtgaatgaaatgcatgaatgcaatcctatgggctcaagggtgctcaccgaaccttgaacgaggcgcgggaaagtctggacagcggcagcggtgaagaagatggtccggcgacggtgtagagctccgggaagacggcaacggctcgatccactcatcgaattgacatgcatgtgttttcatggggttagtgaggtcccagggatggtgtatacgcgaagaatcggacaatggctcaccggaggaggcggaatcgacaatggcgacggcgaccggaggtggagaagacggtggacgatctccacactcgtagcaccattcttcgagattcttgaggggaaatggagaggaggtcgaggcgaagacgctggcgcgacagcttggcccggcttggtccagataagcggaaacggcgatgatgtcgctgcggcggcgcttggagcgcgctccggagtgccgtgggcacgacggcgttcccgtcgatccactgcacgatagaggatgaaattaaaaggataaatcctcggcatggtgaggagagtatggaacgcgaaagagatggggattaccctggcttattgacgagtacggtagtcgtcttcttcgcggccagcggcaaggatgagggcgacggagaagttgagagcctcctccctcggtttcttcggcttagaggtggagaatgatgtgtggagatacagctgggaggaggagaaggctagaataggagtttgatggcgtcgacacgttgtggccacgcgtcgtacacagccggcgccaatctctctctctcggctgtctctggtcggctggaagatttgcacagggtgaggacgagctagagtggctgccaagtgggtccaggtcgtggcgaactaagctagggtgagagggttgggcagaaacgtgggtgaacaaaaggtttgaatgattttcaggattatttctgtctcccactttagtaattcaattatttaatttgtgggtagaataatttagtgtggatttttctgaaggtagatgaagatacctagattccattttctttggtttcactcaaaaattatggatagattactcacagaaattagaggaatatgggttctttggaaactagttcgaatttttaggagccctaaacagagaagataaattctgggaaaattatttttattcatgataaatgacctattatttgaataaattattttacttatacacttttatgcagttaaatgcacttttagacaaagtatggttttagccgattaagaactacagttaatctagtttttattagtttgactgatttatttgaggtaccaaatttagttattaaatcatacaaaaattacagtgagttgtatgtgttgagtagagcctacatgaattttcccatgattttatcttgcacgaattattttagataattcgcaagacttatgtcttatatgtgtttccctttcctaaatgcatgtaaatgtttataaaagttatatttggactctcattaacctgaggtgatattgatatgttagaattacagtttaccttacacaggtcataagctccttacctattatgcataagtttactttagtattaaattaagagaatgcttatagagatgattaagatagaatataccctatatgatataatttatttgttcactttcatgttcatgacatgtcttcagatggatgaccaaatagttttgtggggcttgacattggccttgttgatatatttttaggtgtattatggttcctatgtattattttccattagttagcactaggccctaatggtttagttgtttgtctagattgcaattatattcacgagacctattatgaaatgcaaatcgaaaatccaaatgcatatgaaggactcaaatcaaaatatgatttatgcgagtatgcatgctttcacgtgggttgcatccaagtcctaggttaaagatgaaaaagttttaatttgttctcaaattttattcatgcaagagttggatcaacttcacctttgtttaaaatggaaatttttggtttacaaaattgaagaacttccctttcaactagttttgatggaaattccttaatcctagaattcaggtatgttacagaagtgttgattttgattgaaaatccaacatgctttgcgtacctgttgtagtgagcccttgcttcctcctctgagttgaaagtcaaggtgaggtacggcacttgtgtgcggcacggaatatcctgtgatggtgctgactgtgcttctgaatcatctgttccaaagtctacacttgaaattgtgttggcagtagcagttgttgcgccagttgcaacactagtatgcattgtgtctgcacgatctgacatttcttcaaatacttgcatcacatcatcgccttcaagtacttacatctcatcattaggttcaaatacttgcatctcatcattggctacattgtgtgcttgtaaacttccagcatcactagcagtatacatagtttcaaagtcaaaagtgtcatccaaatttatagcaggaatctccatgctagtgtcagtcggatttatagggaaatatgtttcacttctgtcttcatcatcaactagtaaatggtgtactggaggttcattttcaccataaactaattccgggatactgttgaggtcaaagtccat
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| CDS seq | atggactttgacctcaacagtatcccggaattagtttatggtgaaaatgaacctccagtacaccatttactagttgatgatgaagacagaagtgaaacatatttccctataaatccgactgacactagcatggagattcctgctataaatttggatgacacttttgactttgaaactatgtatactgctagtgatgctggaagtttacaagcacacaatgtagccaatgatgagatgcaagtatttgaacctaatgatgagatgatatacaattgtgaatgctgtaagttcgaaagggatggcattctttgctgtcatgttctgaaggtgatgacatctgattttgtgggccaagtgagtgacattccagaacactacatattggctagatggacgatggttaaagagcctgaattgcctccagttacaagcattggtgaacaaatgcaattgccccctgaatctctgaagctaatcaggtataccaatctgtgcacaaaatttacacagattgcaaaagatgcatcaagcaacgagaaagcctaccgtatggctctacagcgtatgagctcaatgactgatgacttagcagctatgaagcagagtagaaagaaacagaaaaaagcacagccagccccagctgatcctgcaagaggaatttcagatatcccctcggcatcaactaacccaacactagataaatga
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| Protein seq | MDFDLNSIPELVYGENEPPVHHLLVDDEDRSETYFPINPTDTSMEIPAINLDDTFDFETMYTASDAGSLQAHNVANDEMQVFEPNDEMIYNCECCKFERDGILCCHVLKVMTSDFVGQVSDIPEHYILARWTMVKEPELPPVTSIGEQMQLPPESLKLIRYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGISDIPSASTNPTLDK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013020 | OsLima_08g0013020.01 | Chr08 | 17189817 | 17197958 | - | NAM | ||
| CDS seq | atggactttgacctcaacagtatcccggaattagtttatggtgaaaatgaacctccagtacaccatttactagttgatgatgaagacagaagtgaaacatatttccctataaatccgactgacactagcatggagattcctgctataaatttggatgacacttttgactttgaaactatgtatactgctagtgatgctggaagtttacaagcacacaatgtagccaatgatgagatgcaagtatttgaacctaatgatgagatgatatacaattgtgaatgctgtaagttcgaaagggatggcattctttgctgtcatgttctgaaggtgatgacatctgattttgtgggccaagtgagtgacattccagaacactacatattggctagatggacgatggttaaagagcctgaattgcctccagttacaagcattggtgaacaaatgcaattgccccctgaatctctgaagctaatcaggtataccaatctgtgcacaaaatttacacagattgcaaaagatgcatcaagcaacgagaaagcctaccgtatggctctacagcgtatgagctcaatgactgatgacttagcagctatgaagcagagtagaaagaaacagaaaaaagcacagccagccccagctgatcctgcaagaggaatttcagatatcccctcggcatcaactaacccaacactagataaatga
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| Protein seq | MDFDLNSIPELVYGENEPPVHHLLVDDEDRSETYFPINPTDTSMEIPAINLDDTFDFETMYTASDAGSLQAHNVANDEMQVFEPNDEMIYNCECCKFERDGILCCHVLKVMTSDFVGQVSDIPEHYILARWTMVKEPELPPVTSIGEQMQLPPESLKLIRYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGISDIPSASTNPTLDK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | SBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13740 | SBH | 0.0 | 0.000000 | 0.118465 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021930 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017000 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0261500 | RBH | 0.007166 | 0.000422 | 0.062683 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0286200 | RBH | 0 | 0.012287 | 0.003303 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013850 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009560 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009650 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009770 | SBH | 0.0 | 0.0 | 0.0 |
