Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0261500 | OGI:08048990 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:18375201-18377747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATTTATCTAGTGTTGGGTTAGTTGATGCCGAGGGGATATCTGAAATTCCTCTTGCAGGATCAGCTGGGGCTGGCTGTGCTTTTTTCTGTTTCTTTCTACTCTGCTTCATAGCTGCTAAGTCATCAGTCATTGAGCTCATACGCTGTAGAGCCATACGGTAGGCTTTCTCGTTGCTTGATGCATCTTTTGCAATCTGTGTAAATTTTGTGCACAGATTGGTATACCTGATTAGCTTCAGAGATTCAGGGGGCAATTGCATTTGTTCACCAATGCTTGTAACTGGAGGCAATTCAGGCTCTTTAACCATCGTCCATCTAGCCAATATGTAGTGTTCTGGAATGTCACTCACTTGGCCCACAAAATCAGATGTCATCACCTGCATGGAAAAAAACATATGTTTTATTACCTGCCAAAAGTGCTTAATGCATAAGAAGTAATTTAATGCACATTAAGAAGTAACTTAATGTGCAGTGAGAAGTAGCTTAATGCACAGTGAGAAGTAGCTTACTGCAATAACAGACTGTTACCTTCAGAACATGACAGCAAAGAATGCCATCCCTTTCGAACTTACAGCATTCACAATTGTATATCCTGTCCAACACATTTGCAGCTACAATGAATCCCCTTGATCCATAATTCCTAACAGGACCTCCATTCGGTTCTACTAGATACATGTTTTCAGAAGTTCGGGTCAATTTATATGATGTTGAAGCAATAAGCTCTTTTTGAAATCTGTTGAATATAGACCTTGTGTAGACCTCCAATGCTTTTGTTTCCATGGGATAGTTAGCCCACATAGAAGGGATTGTTTCTTCTGCTTCAAACTCATTCTGATCTGTTGCAACAGTGATTTTTTCTTGAATCTTCTTGTACTGCAAAAAGAAGTTGTATATGCTGTTTTGGGGATTTACATAGCGCTTCAGCACTGCGTTAAATCCCTCACTCTATGCTGTAGTCTGGAGGAAAAGGAAGAAACAGTGCATAAAGTATGCTAGGACCCAACACTGTCTTATTTCCCAAAGGTGTCGGAAGTGCTCATTATCTTGTAAATGATATGTTGTCAACATTGCATCCCATTTAGCATCAAACTCTTGCTCTGTCCAGCTATTGTCAAGGCAGTCATTGAATGCATCACACAATGCTTTGTCATGATCTAATATATGGCCAATCTTCTTCTGAGCATTCTGCATTATATGCCAGCGGCAGTTGCGATGCTTAGCATGCGGGAAAACTAGCGCTATAGCTTCCTTCATAGCTAGGTCTTGATCAGTTATTATGTTTGTGGGCTCTACACCTTCCATAGCCTCTAGAAATGCTTGAAACAACCATACAAAGGTTTCTGTCTTTTCATTCCTTAGAAATCCACAACCCAGCTGAATATCAAAAATAATACACATAAGGAAGTCAGTACAGTTTTGAAGGAAGTAAGTTACTACAATTTTGCGTAGTCTGTACAGTTTGTGTTTGCTGGAAGTAAATCTGTACAATTTTGAACTATAGAACAAACACTAAAAATGTAACTTGTAAACTTAGTTACTTTTTTACCTTTTTTTTTTAAAAAAAATGTAACTTCACATTCTATTGGAAGTAACTTTTATCAGGACTTGATGTAACTCAATGAATGCAACAAGTAACTTATGATGTACTATAATGTACAAAGTTATTATAGATTTTTTAGAATTACTTTTTTGCAAAAAAAAAAGGAGTACCTGTATTGATTGCCCATGTCTGTTTATCCCAATGAATGGTGCACAAGGCATGTTATACATGTTTGTCATGTATGTGCAATCAAACGAGATGCAATCTTTGAAGTCTTTGTAGGCATTTCTTGCTGCTCCATCAACACAGGTACTCGAGAGAAGAATATTGGAGACATTGCTAGGCCTTTAGCCAACTTCAGCCTGAGATGTGCCCGTCAAACCACTCGAAGGCGGCGACCAGATGTGTTACACATTCAGGAGACTTGACAAAAATAGCTAAAGATCTACAACATCTCAAATATTCTTAACTCATACTCATGTGAATCTAGTTCCCAAGATGTGCACTAGATTCACACTTTCATCTCAAGCATGATTATACATAGCAAACACAAATAAGATGAAAGCGATTATAAACTACATCTACTTTAGTTACATTGGCCGACCGGCCAAATAAATATATAGAACAGCGGAAGCTTGTCTACCCAATCCACAAGCACACCGACTAGGGGTTTACCCCATTAAGTTCAAGTCCTAGAAGAAGCAGTCGATCACCCGCATCACTTAAAGGCTAAGTCTAAATCCTGCAAGCAAAAGGTTAATTCCACAGCAAGAGTCAGTACATTATTAAAAATAATGTACTGGCAAGCACCAAGACAAGCCTAAGACCCTACTTGCAAGGCATATACTCAGGGAAGGCATAATATGGTTCTTTTTAGCATAGAGCAAGTTTTATTTGCATAAAACATTTCCAAATCAGGTTTACTTTCAAATAAATTTCAGCAAGCTAGTTCTTGACATATTGGGCATCAAAATAAGCATTAATCATGTATAAATATGCACCTCAT
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| CDS seq | ATGAGGCCTAGCAATGTCTCCAATATTCTTCTCTCGAGTACCTGTGTTGATGGAGCAGCAAGAAATGCCTACAAAGACTTCAAAGATTGCATCTCGTTTGATTGCACATACATGACAAACATGTATAACATGCCTTGTGCACCATTCATTGGGATAAACAGACATGGGCAATCAATACAGCTGGGTTGTGGATTTCTAAGGAATGAAAAGACAGAAACCTTTGTATGGTTGTTTCAAGCATTTCTAGAGGCTATGGAAGGTGTAGAGCCCACAAACATAATAACTGATCAAGACCTAGCTATGAAGGAAGCTATAGCGCTAGTTTTCCCGCATGCTAAGCATCGCAACTGCCGCTGGCATATAATGCAGAATGCTCAGAAGAAGATTGGCCATATATTAGATCATGACAAAGCATTGTGTGATGCATTCAATGACTGCCTTGACAATAGCTGGACAGAGCAAGAGTTTGATGCTAAATGGGATGCAATGTTGACAACATATCATTTACAAGATAATGAGCACTTCCGACACCTTTGGGAAATAAGACAGTGTTGGAGTGAGGGATTTAACGCAGTGCTGAAGCGCTATGTAAATCCCCAAAACAGCATATACAACTTCTTTTTGCAGTACAAGAAGATTCAAGAAAAAATCACTGTTGCAACAGATCAGAATGAGTTTGAAGCAGAAGAAACAATCCCTTCTATGTGGGCTAACTATCCCATGGAAACAAAAGCATTGGAGGTCTACACAAGGTCTATATTCAACAGATTTCAAAAAGAGCTTATTGCTTCAACATCATATAAATTGACCCGAACTTCTGAAAACATGTATCTAGTAGAACCGAATGGAGGTCCTGTTAGGAATTATGGATCAAGGGGATTCATTGTAGCTGCAAATGTGTTGGACAGGATATACAATTGTGAATGCTGTAAGTTCGAAAGGGATGGCATTCTTTGCTGTCATGTTCTGAAGGTGATGACATCTGATTTTGTGGGCCAAGTGAGTGACATTCCAGAACACTACATATTGGCTAGATGGACGATGGTTAAAGAGCCTGAATTGCCTCCAGTTACAAGCATTGGTGAACAAATGCAATTGCCCCCTGAATCTCTGAAGCTAATCAGGTATACCAATCTGTGCACAAAATTTACACAGATTGCAAAAGATGCATCAAGCAACGAGAAAGCCTACCGTATGGCTCTACAGCGTATGAGCTCAATGACTGATGACTTAGCAGCTATGAAGCAGAGTAGAAAGAAACAGAAAAAAGCACAGCCAGCCCCAGCTGATCCTGCAAGAGGAATTTCAGATATCCCCTCGGCATCAACTAACCCAACACTAGATAAATGA
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| Protein seq | MRPSNVSNILLSSTCVDGAARNAYKDFKDCISFDCTYMTNMYNMPCAPFIGINRHGQSIQLGCGFLRNEKTETFVWLFQAFLEAMEGVEPTNIITDQDLAMKEAIALVFPHAKHRNCRWHIMQNAQKKIGHILDHDKALCDAFNDCLDNSWTEQEFDAKWDAMLTTYHLQDNEHFRHLWEIRQCWSEGFNAVLKRYVNPQNSIYNFFLQYKKIQEKITVATDQNEFEAEETIPSMWANYPMETKALEVYTRSIFNRFQKELIASTSYKLTRTSENMYLVEPNGGPVRNYGSRGFIVAANVLDRIYNCECCKFERDGILCCHVLKVMTSDFVGQVSDIPEHYILARWTMVKEPELPPVTSIGEQMQLPPESLKLIRYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGISDIPSASTNPTLDK |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0261500 | OsMH63_08T0261500-mRNA-1 | Chr08 | 18375201 | 18377747 | - | maker | ||
| CDS seq | ATGAGGCCTAGCAATGTCTCCAATATTCTTCTCTCGAGTACCTGTGTTGATGGAGCAGCAAGAAATGCCTACAAAGACTTCAAAGATTGCATCTCGTTTGATTGCACATACATGACAAACATGTATAACATGCCTTGTGCACCATTCATTGGGATAAACAGACATGGGCAATCAATACAGCTGGGTTGTGGATTTCTAAGGAATGAAAAGACAGAAACCTTTGTATGGTTGTTTCAAGCATTTCTAGAGGCTATGGAAGGTGTAGAGCCCACAAACATAATAACTGATCAAGACCTAGCTATGAAGGAAGCTATAGCGCTAGTTTTCCCGCATGCTAAGCATCGCAACTGCCGCTGGCATATAATGCAGAATGCTCAGAAGAAGATTGGCCATATATTAGATCATGACAAAGCATTGTGTGATGCATTCAATGACTGCCTTGACAATAGCTGGACAGAGCAAGAGTTTGATGCTAAATGGGATGCAATGTTGACAACATATCATTTACAAGATAATGAGCACTTCCGACACCTTTGGGAAATAAGACAGTGTTGGAGTGAGGGATTTAACGCAGTGCTGAAGCGCTATGTAAATCCCCAAAACAGCATATACAACTTCTTTTTGCAGTACAAGAAGATTCAAGAAAAAATCACTGTTGCAACAGATCAGAATGAGTTTGAAGCAGAAGAAACAATCCCTTCTATGTGGGCTAACTATCCCATGGAAACAAAAGCATTGGAGGTCTACACAAGGTCTATATTCAACAGATTTCAAAAAGAGCTTATTGCTTCAACATCATATAAATTGACCCGAACTTCTGAAAACATGTATCTAGTAGAACCGAATGGAGGTCCTGTTAGGAATTATGGATCAAGGGGATTCATTGTAGCTGCAAATGTGTTGGACAGGATATACAATTGTGAATGCTGTAAGTTCGAAAGGGATGGCATTCTTTGCTGTCATGTTCTGAAGGTGATGACATCTGATTTTGTGGGCCAAGTGAGTGACATTCCAGAACACTACATATTGGCTAGATGGACGATGGTTAAAGAGCCTGAATTGCCTCCAGTTACAAGCATTGGTGAACAAATGCAATTGCCCCCTGAATCTCTGAAGCTAATCAGGTATACCAATCTGTGCACAAAATTTACACAGATTGCAAAAGATGCATCAAGCAACGAGAAAGCCTACCGTATGGCTCTACAGCGTATGAGCTCAATGACTGATGACTTAGCAGCTATGAAGCAGAGTAGAAAGAAACAGAAAAAAGCACAGCCAGCCCCAGCTGATCCTGCAAGAGGAATTTCAGATATCCCCTCGGCATCAACTAACCCAACACTAGATAAATGA
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| Protein seq | MRPSNVSNILLSSTCVDGAARNAYKDFKDCISFDCTYMTNMYNMPCAPFIGINRHGQSIQLGCGFLRNEKTETFVWLFQAFLEAMEGVEPTNIITDQDLAMKEAIALVFPHAKHRNCRWHIMQNAQKKIGHILDHDKALCDAFNDCLDNSWTEQEFDAKWDAMLTTYHLQDNEHFRHLWEIRQCWSEGFNAVLKRYVNPQNSIYNFFLQYKKIQEKITVATDQNEFEAEETIPSMWANYPMETKALEVYTRSIFNRFQKELIASTSYKLTRTSENMYLVEPNGGPVRNYGSRGFIVAANVLDRIYNCECCKFERDGILCCHVLKVMTSDFVGQVSDIPEHYILARWTMVKEPELPPVTSIGEQMQLPPESLKLIRYTNLCTKFTQIAKDASSNEKAYRMALQRMSSMTDDLAAMKQSRKKQKKAQPAPADPARGISDIPSASTNPTLDK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.007166 | 0.000422 | 0.062683 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27740 | RBH | 0.0 | 0.0 | 0.054341 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011520 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011230 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0126300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0129200 | SBH | 0 | 0 | 0.0068755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
