Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_08g0022040 | OGI:08048990 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr08:26267422-26268765 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTCTTTTGTGCCACCCCTTTTTGATGAAGATGAATTTATCTTCTTTTTGCCTTCTAATTCAGCCCCAGAATTATGCTTCTCCTGTGATATATCTTGTTGCAAATCTTTTCTTTTGTTTGAAACATCTTTCTTTTTCTGCTCTACACCATCCTGCAACAAATAATATCTTTCTTTATTACTTTTTTTAAAAAAATTCAATTCATATGGATTTGTAATTTTTGTTACCTGTTCTCTTGTATTTTTAACCTTTCTTCTCTTCTTCCTTGGCAAGTCAAACTCAACGTGTTTCAGAGGGCACGTTGGAAATGTGTGATCTGTCCTCTGACAATGACTGCAATGATATAGTTCTTTTTGCTGTATTTCTTCCCTGATTGTCTTGTATCTTTGAGCTGGCCTGCCTTTGGATTTTGCAATATCTGGATCCAACAATATTTCTTCTGTATTTTCCTCAGATTGTTGATTGCCTTTTTCATGTGAGTTCAAATTGTCTTCTGCATTTAGATCTGAATCATTGATCTCCTGCTCAGCATCTTTATTTGAACACATTAATTCCAATTGTTTAGCAATTTTGTCCATCTCTTCCACTGCAAACTGGAAAGTTTCATTGCTTTTCGATCCATTTGATGCTATTTCTGCACTTTTCCTTGACAAAATGTTGAATCTCAGGATTGAGCTCTGTGCTAAAGGTATATTTCCATTGCCTTTTCCCCTAAGACCTTTGTACTCTTTTTTTGTCCATCTTTCAATAATATATTTTTCTGGTATCTTCATTGCATTGAGGTGGAGCATTACTTTCAATACATGGCAGCATAGAAGTCCATCTTTCTCAAACTTTGAGCAAATGCAGTTGAAATCCTCTTTTTCCAAGTCCACAATAACAAGGTACTTCCTGCTTCTGATTACTTGAATATTTTGATTCAATGCCAAAAAAACTTCATAAGTTTTGAACTTCTCTACTTTATTTATTTGAAATCTAGTTGTTCTTTTCAACTCAACTTGAAACTTGATGAAGATTTTGCGATTATACATTCTCATTGCTTGGTACTCAATGTAGTAATGGGACCAAAGTTTGCTTGGTTTCTTTGTCCTTGAAATGTGATAATCAAACTATTCCAAGTTTTGAATTGTATTCATTACTCTTTCATACTCTATCATGAAGTTTGTAATGCTGTACTGTGGACCAACATTATTCTTAAACCTTGAGTTAGTCCCTTCACTGAGAGCTGTGCTTTTTATAAATGGACAAAAATCACCCTTAAAATACACTGGAATAAATCTTTTTCTAATTGACCACATGTGCTTTAGAAAATTGATATGCTGAACTTCAAAGCTGTCAATCAT
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| CDS seq | ATGATTGACAGCTTTGAAGTTCAGCATATCAATTTTCTAAAGCACATGTGGTCAATTAGAAAAAGATTTATTCCAGTGTATTTTAAGGGTGATTTTTGTCCATTTATAAAAAGCACAGCTCTCAGTGAAGGGACTAACTCAAGGTTTAAGAATAATGTTGGTCCACAGTACAGCATTACAAACTTCATGATAGAGACAAAGAAACCAAGCAAACTTTGGTCCCATTACTACATTGAGTACCAAGCAATGAGAATGTATAATCGCAAAATCTTCATCAAGTTTCAAGTTGAGTTGAAAAGAACAACTAGATTTCAAATAAATAAAGTAGAGAAGTTCAAAACTTATGAAGTTTTTTTGGCATTGAATCAAAATATTCAAGTAATCAGAAGCAGGAAGTACCTTGTTATTGTGGACTTGGAAAAAGAGGATTTCAACTGCATTTGCTCAAAGTTTGAGAAAGATGGACTTCTATGCTGCCATGTATTGAAAGTAATGCTCCACCTCAATGCAATGAAGATACCAGAAAAATATATTATTGAAAGATGGACAAAAAAAGAGTACAAAGGTCTTAGGGGAAAAGGCAATGGAAATATACCTTTAGCACAGAGCTCAATCCTGAGATTCAACATTTTGTCAAGGAAAAGTGCAGAAATAGCATCAAATGGATCGAAAAGCAATGAAACTTTCCAGTTTGCAGTGGAAGAGATGGACAAAATTGCTAAACAATTGGAATTAATGTGTTCAAATAAAGATGCTGAGCAGGAGATCAATGATTCAGATCTAAATGCAGAAGACAATTTGAACTCACATGAAAAAGGCAATCAACAATCTGAGGAAAATACAGAAGAAATATTGTTGGATCCAGATATTGCAAAATCCAAAGGCAGGCCAGCTCAAAGATACAAGACAATCAGGGAAGAAATACAGCAAAAAGAACTATATCATTGCAGTCATTGTCAGAGGACAGATCACACATTTCCAACGTGCCCTCTGAAACACGTTGAGTTTGACTTGCCAAGGAAGAAGAGAAGAAAGGTTAAAAATACAAGAGAACAGGATGGTGTAGAGCAGAAAAAGAAAGATGTTTCAAACAAAAGAAAAGATTTGCAACAAGATATATCACAGGAGAAGCATAATTCTGGGGCTGAATTAGAAGGCAAAAAGAAGATAAATTCATCTTCATCAAAAAGGGGTGGCACAAAAGAATAG
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| Protein seq | MIDSFEVQHINFLKHMWSIRKRFIPVYFKGDFCPFIKSTALSEGTNSRFKNNVGPQYSITNFMIETKKPSKLWSHYYIEYQAMRMYNRKIFIKFQVELKRTTRFQINKVEKFKTYEVFLALNQNIQVIRSRKYLVIVDLEKEDFNCICSKFEKDGLLCCHVLKVMLHLNAMKIPEKYIIERWTKKEYKGLRGKGNGNIPLAQSSILRFNILSRKSAEIASNGSKSNETFQFAVEEMDKIAKQLELMCSNKDAEQEINDSDLNAEDNLNSHEKGNQQSEENTEEILLDPDIAKSKGRPAQRYKTIREEIQQKELYHCSHCQRTDHTFPTCPLKHVEFDLPRKKRRKVKNTREQDGVEQKKKDVSNKRKDLQQDISQEKHNSGAELEGKKKINSSSSKRGGTKE |
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| Function | Protein FAR1-RELATED SEQUENCE 4 [UniProtKB/Swiss-Prot:Q6NQJ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_08g0022040 | OsAzu_08g0022040.01 | Chr08 | 26267422 | 26268765 | - | NAM | ||
| CDS seq | ATGATTGACAGCTTTGAAGTTCAGCATATCAATTTTCTAAAGCACATGTGGTCAATTAGAAAAAGATTTATTCCAGTGTATTTTAAGGGTGATTTTTGTCCATTTATAAAAAGCACAGCTCTCAGTGAAGGGACTAACTCAAGGTTTAAGAATAATGTTGGTCCACAGTACAGCATTACAAACTTCATGATAGAGACAAAGAAACCAAGCAAACTTTGGTCCCATTACTACATTGAGTACCAAGCAATGAGAATGTATAATCGCAAAATCTTCATCAAGTTTCAAGTTGAGTTGAAAAGAACAACTAGATTTCAAATAAATAAAGTAGAGAAGTTCAAAACTTATGAAGTTTTTTTGGCATTGAATCAAAATATTCAAGTAATCAGAAGCAGGAAGTACCTTGTTATTGTGGACTTGGAAAAAGAGGATTTCAACTGCATTTGCTCAAAGTTTGAGAAAGATGGACTTCTATGCTGCCATGTATTGAAAGTAATGCTCCACCTCAATGCAATGAAGATACCAGAAAAATATATTATTGAAAGATGGACAAAAAAAGAGTACAAAGGTCTTAGGGGAAAAGGCAATGGAAATATACCTTTAGCACAGAGCTCAATCCTGAGATTCAACATTTTGTCAAGGAAAAGTGCAGAAATAGCATCAAATGGATCGAAAAGCAATGAAACTTTCCAGTTTGCAGTGGAAGAGATGGACAAAATTGCTAAACAATTGGAATTAATGTGTTCAAATAAAGATGCTGAGCAGGAGATCAATGATTCAGATCTAAATGCAGAAGACAATTTGAACTCACATGAAAAAGGCAATCAACAATCTGAGGAAAATACAGAAGAAATATTGTTGGATCCAGATATTGCAAAATCCAAAGGCAGGCCAGCTCAAAGATACAAGACAATCAGGGAAGAAATACAGCAAAAAGAACTATATCATTGCAGTCATTGTCAGAGGACAGATCACACATTTCCAACGTGCCCTCTGAAACACGTTGAGTTTGACTTGCCAAGGAAGAAGAGAAGAAAGGTTAAAAATACAAGAGAACAGGATGGTGTAGAGCAGAAAAAGAAAGATGTTTCAAACAAAAGAAAAGATTTGCAACAAGATATATCACAGGAGAAGCATAATTCTGGGGCTGAATTAGAAGGCAAAAAGAAGATAAATTCATCTTCATCAAAAAGGGGTGGCACAAAAGAATAG
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| Protein seq | MIDSFEVQHINFLKHMWSIRKRFIPVYFKGDFCPFIKSTALSEGTNSRFKNNVGPQYSITNFMIETKKPSKLWSHYYIEYQAMRMYNRKIFIKFQVELKRTTRFQINKVEKFKTYEVFLALNQNIQVIRSRKYLVIVDLEKEDFNCICSKFEKDGLLCCHVLKVMLHLNAMKIPEKYIIERWTKKEYKGLRGKGNGNIPLAQSSILRFNILSRKSAEIASNGSKSNETFQFAVEEMDKIAKQLELMCSNKDAEQEINDSDLNAEDNLNSHEKGNQQSEENTEEILLDPDIAKSKGRPAQRYKTIREEIQQKELYHCSHCQRTDHTFPTCPLKHVEFDLPRKKRRKVKNTREQDGVEQKKKDVSNKRKDLQQDISQEKHNSGAELEGKKKINSSSSKRGGTKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40310 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016840 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021930 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017000 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018670 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0201300 | SBH | 0.0069915 | 0.1400355 | 0.0128135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016020 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0427600 | RBH | 0 | 0.0054345 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010310 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016170 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016530 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017690 | SBH | 0.0 | 0.0 | 0.0 |
