Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012280 | OGI:08034580 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:15332975-15337415 | ||||||||
| Gene Symbol | OsTPP1, TPP1, - | ||||||||||
| DNA seq | ttatCctccctgctgttgtgtttgctgagatttttgagtactactctttcctgcaagaaacaaataacattacatatgaaacaattacattattattttcattaatatttatatttattatttttgcttttaccctttttcaatactcttcctttacatttctgaacatcttcattattgctccttgtagtttttccctttttatcactagctcctgcaaaaacaagtttcaattttgttattttttctgtgtacttaatatatgttttgttttcaatattgtattattttactactactaaaatttttgaaacttacttgtctttgctatgctatcttcagcttcttttctctttttggaactttcaattatcttgtccactattcttctgtatctttttggttttcttccttttgtgtttgccatatttgggtcttctatttccacttcttcaaacatatcttcttctgcttgctgtgtattttcagtgggtattgtgttgctttcatcttctgacaggtgcgtttcattttcctgttcaatcatcaagtctacacTtttttccaatttttcaagttcatcaaccatgtactgaaaagttcTttttctttttgatgcttttgaagctatgtctgcccccttccttgaaagaacattaaacatcaaaactgagttgtcacatttatctgcaggaatggtgttcttcactttttcctttctttctttttttctccatctatcaattatgtatttctctggaatttttctcacattgaggtccaacatcactttcaggatatgtgaacagagcattccatcctttgagaatttcccacaaatgcaactaaagttttcatttggtaagtcaatgatcactatatgtttcctttgtctatattcttgctggatgctattaggtgacacaaacacctcatataccttgccttgttgtagcatagacacttgcagccttaaagtatcctttagttcattttggaattttttgaatagctctagattgtatagttctgacgcttgctcttcaatgatatagttgaaccacaatgTTtttggcttctttgttcttgattgaaaatctttgctgtactcagtgttgaagatagtatcatttatgttctcatactctttcatgaaactcatcacactatgttgtggtccaactcctcttttgaacctgctatttgtcccttcactcagtgctgtgctttgtataaaagggcagAaatcatacttgaagtagacaggcacaaactgagctctgttcttccatattagctgcaagtaTtttatattctgcaaactgaacttttcaatcatctgaggccaaagaacttcaaactcctcttctgttagacaattgttcagtatgtcatcatattcatcatacagatttttgttagatttttctgagaacatgctgcctgttttttctctgcagtttttcttgatgtgaaagagacagtttcTGtgctttgtattttgaaaaacctgagctattgccgacctcatggcgttgtcttgatctgtaattattgtctggggatgcttccctcccattgctgttataaatgtttcaaaaacccacttaaaagtctctgttgtttcatctcctaaaaatgcacaaccaaacaagcaagtagtcccatgtcctgtaacaccaacaaatggtgcaaatagcaagttatatctgtttgttctatatgttgtgtcaaaacttatgcagtcaccatattcctcatatagctgagtcgacctcccatctgtccaaaacatacttgtcactttgttgtcttcatctagcttgaatttgtagtacataccagggtcatcctcttcctttttcttcagataattcagcacttgcttcatgtcattgttctttgtctctgaatttattgttgttccgacattacttacatccttcttggtgtagggtagtgctgccaagccaccccggagaaatgataatatcacaatcatgctcctagttggtatgttacactcttttaatgtccttattagtctcttttcttcctctgtcatatccttatgagacctcagaaacttagcttctcttcttgggcaaagtgcatggttatgattcaggtcaagccttgatatttgccaaaactatccaacttcttttgctaccattgtacatttgcaatttgttttgactaggactatcgtttccctctgctgttcagtagcttgttcattgctcttcttgtttgctggttcatttttgccttgcaagttgcatttgtatgtgtactttgttatttcaccttgtcttttcttgcttgttgtcttgtagtggtgcgcaatcacaacagaaaaaccggctaggtaggcatagaagttgaagaatcctctagcttctgtatgtgatttgaacttcattcctagcttaggtatgtgtttatcatctattggtaaactgctctcctcttcattttgtaagaaattgtcaatgtcttcctcacttaattcctccccattgttagcagctgaatgtaaattgtcattcatttcagcctccgtttgctgttgttgtatccctgaaatttctgttgcttcagatcttgtttgttgctcttcaatatcttgctcatgaaagctttcgttgtatggctgaaaacaaggattaatagtagtaaatcaaatgtttttgcaagctaattaacatctggaatcttcaaagtgaactaaaattataatatttttgcttatatattttgtgttgacaaacctgatcactttcatagtcctgttggtctttatcttgagtggcccagcttattggaattctctgcatatttaacagtattttttcagtaaattgaggattttgcagcttttaatgctgatattgttaaattaataaaaaaatatgcatacctgtgatttcaaatgtgtgttctgcaatttgtacaattcctccatacttctgtcacctggaatctgtgtatttttgatgaattttttagactagtacatatgcaagtttaaaaatgttagtctactacacatgcaagtttgtaattccatgttgttacctctgaagtaatgctattattgttgttgtacagctcatcaaattcttggtaaatattttgtttgcgcggcatgaatattgcactgtttctgtcattcagctttgtgttttgaggagaaaacctgcttgttgttaggatcattgaattctgcattatcaaaattaaaaaaaattagtttgtacaatgaatatgataattagctctacaaaaatttaaatgcacaaaaaaacttacatgaaaggccgagggtgtctgaaggagacttgtgaaactttctaggcttgcctgcatcatttttaTtttttctcatagtcaaacatttgttgttgtacaatgatattcatatcgttattctatattcttaccatattaggttgtatgtttatgcgtggactgtttatcacttggtgcatgagacttgtatatgataactgtgctacctgcatttcaatttgttagtatcagaaaaaatgatgtaattgtcttttttgtatgttgcttatttatttatattttaccggtgttccttgagagtttagcatgtttaactcatcatgtagcaatgctgggctctgtggcatttgagttgcagttattcctgtcaattgaaaatgcatgaaggattagctatttgtaattaaaattttaTttttcatttggtgcagaatacatatagtcaaagaatattatttttttacctgaattttgtgtgatggtacaacttctttcttgaatatgctttgtttctgttttgtccttctctgattcttttaaacttccccttatatcttgtagttgatgaatatctgtacctgcaagaagtatcacattgattggtaagtactggcatgtcagattttttacgatctagcaaatttgtatttttttcttttgtaccttgggtcatactgttgctattctcatttcattctgtacttgaaatagttcctgctcctgcgaagtattaaaaaaatagttatagcatcaaaattcatgtgtaattcaaagtgtcagagagtacttttacatttagttaaagttttgttacatgtCAcacacactataattacatgtgtaattttattaaattctcattgtaactttctctattttattAaaaatatagaaacaaatactgtgaaaaacaaagttacattacaaatcaactgtatatacatatgtatttttggttctgactcactgtaaaaaccaaatgtatggacttttttatgcttgttcagactatttttgttggttaatgcttctatttgatacctgcattttctttcatcttgtgtttttctttagtcccctctgtctccaagctcactttctgtttatattctaaaattggcttcat
More
|
||||||||||
| CDS seq | atgaagccaattttagaatataaacagaaagtgagcttggagacagaggggactaaagaaaaacacaagatgaaagaaaatgcaggtacagatattcatcaactacaagatataaggggaagtttaaaagaatcagagaaggacaaaacagaaacaaagcatattcaagaaagaagttgtaccatcacacaaaattcaggaataactgcaactcaaatgccacagagcccagcattgctacatgatgagttaaacatgctaaactctcaaggaacaccggtagcacagttatcatatacaagtctcatgcaccaagtgataaacagtccacgcataaacatacaacctaatatggcaagcctagaaagtttcacaagtctccttcagacaccctcggcctttcataattcaatgatcctaacaacaagcaggttttctcctcaaaacacaaagctgaatgacagaaacagtgcaatattcatgccgcgcaaacaaaatatttaccaagaatttgatgagctgtacaacaacaataatagcattacttcagagattccaggtgacagaagtatggaggaattgtacaaattgcagaacacacatttgaaatcacagagaattccaataagctgggccactcaagataaagaccaacaggactatgaaagtgatcagccatacaacgaaagctttcatgagcaagatattgaagagcaacaaacaagatctgaagcaacagaaatttcagggatacaacaacagcaaacggaggctgaaatgaatgacaatttacattcagctgctaacaatggggaggaattaagtgaggaagacattgacaatttcttacaaaatgaagaggagagcagtttaccaatagatgataaacacatacctaagctaggaatgaagttcaaatcacatacagaagctagaggattcttcaacttctatgcctacctagccggtttttctgttgtgattgcgcaccactacaagacaacaagcaagaaaagacaaggtgaaataacaaagtacacatacaaatgcaacttgcaaggcaaaaatgaaccagcaaacaagaagagcaatgaacaagctactgaacagcagagggaaacgatagtcctattttggcaaatatcaaggcttgacctgaatcataaccatgcactttgcccaagaagagaagctaagtttctgaggtctcataaggatatgacagaggaagaaaagagactaataaggacattaaaagagtgtaacataccaactaggagcatgattgtgatattatcatttctccggggtggcttggcagcactaccctacaccaagaaggataatataaaAtacttgcagctaatatggaagaacagagctcagtttgtgcctgtctacttcaagtatgattTctgcccttttatacaaagcacagcactgagtgaagggacaaatagcaggttcaaaagaggagttggaccacaacatagtgtgatgagtttcatgaaagagtatgagaacataaatgatactatcttcaacactgagtacagcaaagattttcaatcaagaacaaagaagccaaaAAcattgtggttcaactatatcattgaagagcaagcgtcagaactatacaatctagagctattcaaaaaattccaaaatgaactaaaggatactttaaggctgcaagtgtctatgctacaacaaggcaaggtatatgaggtgtttgtgtcacctaatagcatccagcaagaatatagacaaaggaaacatatagtgatcattgacttaccaaatgaaaactttagttgcatttgtgggaaattctcaaaggatggaatgctctgttcacatatcctgaaagtgatgttggacctcaatgtgagaaaaattccagagaaatacataattgatagatggagaaaaaaagaaagaaaggaaaaagtgaagaacaccattcctgcagataaatgtgacaactcagttttgatgtttaatgttctttcaaggaagggggcagacatagcttcaaaagcatcaaaaagaaaaAgaacttttcagtacatggttgatgaacttgaaaaattggaaaaaAgtgtagacttgatgattgaacaggaaaatgaaacgcacctgtcagaagatgaaagcaacacaatacccactgaaaatacacagcaagcagaagaagatatgtttgaagaagtggaaatagaagacccaaatatggcaaacacaaaaggaagaaaaccaaaaagatacagaagaatagtggacaagataattgaaagttccaaaaagagaaaagaagctgaagatagcatagcaaagacaagaaagagtagtactcaaaaatctcagcaaacacaacagcagggagGataa
More
|
||||||||||
| Protein seq | MKPILEYKQKVSLETEGTKEKHKMKENAGTDIHQLQDIRGSLKESEKDKTETKHIQERSCTITQNSGITATQMPQSPALLHDELNMLNSQGTPVAQLSYTSLMHQVINSPRINIQPNMASLESFTSLLQTPSAFHNSMILTTSRFSPQNTKLNDRNSAIFMPRKQNIYQEFDELYNNNNSITSEIPGDRSMEELYKLQNTHLKSQRIPISWATQDKDQQDYESDQPYNESFHEQDIEEQQTRSEATEISGIQQQQTEAEMNDNLHSAANNGEELSEEDIDNFLQNEEESSLPIDDKHIPKLGMKFKSHTEARGFFNFYAYLAGFSVVIAHHYKTTSKKRQGEITKYTYKCNLQGKNEPANKKSNEQATEQQRETIVLFWQISRLDLNHNHALCPRREAKFLRSHKDMTEEEKRLIRTLKECNIPTRSMIVILSFLRGGLAALPYTKKDNIKYLQLIWKNRAQFVPVYFKYDFCPFIQSTALSEGTNSRFKRGVGPQHSVMSFMKEYENINDTIFNTEYSKDFQSRTKKPKTLWFNYIIEEQASELYNLELFKKFQNELKDTLRLQVSMLQQGKVYEVFVSPNSIQQEYRQRKHIVIIDLPNENFSCICGKFSKDGMLCSHILKVMLDLNVRKIPEKYIIDRWRKKERKEKVKNTIPADKCDNSVLMFNVLSRKGADIASKASKRKRTFQYMVDELEKLEKSVDLMIEQENETHLSEDESNTIPTENTQQAEEDMFEEVEIEDPNMANTKGRKPKRYRRIVDKIIESSKKRKEAEDSIAKTRKSSTQKSQQTQQQGG |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012280 | OsLima_08g0012280.01 | Chr08 | 15332975 | 15337415 | - | NAM | ||
| CDS seq | atgaagccaattttagaatataaacagaaagtgagcttggagacagaggggactaaagaaaaacacaagatgaaagaaaatgcaggtacagatattcatcaactacaagatataaggggaagtttaaaagaatcagagaaggacaaaacagaaacaaagcatattcaagaaagaagttgtaccatcacacaaaattcaggaataactgcaactcaaatgccacagagcccagcattgctacatgatgagttaaacatgctaaactctcaaggaacaccggtagcacagttatcatatacaagtctcatgcaccaagtgataaacagtccacgcataaacatacaacctaatatggcaagcctagaaagtttcacaagtctccttcagacaccctcggcctttcataattcaatgatcctaacaacaagcaggttttctcctcaaaacacaaagctgaatgacagaaacagtgcaatattcatgccgcgcaaacaaaatatttaccaagaatttgatgagctgtacaacaacaataatagcattacttcagagattccaggtgacagaagtatggaggaattgtacaaattgcagaacacacatttgaaatcacagagaattccaataagctgggccactcaagataaagaccaacaggactatgaaagtgatcagccatacaacgaaagctttcatgagcaagatattgaagagcaacaaacaagatctgaagcaacagaaatttcagggatacaacaacagcaaacggaggctgaaatgaatgacaatttacattcagctgctaacaatggggaggaattaagtgaggaagacattgacaatttcttacaaaatgaagaggagagcagtttaccaatagatgataaacacatacctaagctaggaatgaagttcaaatcacatacagaagctagaggattcttcaacttctatgcctacctagccggtttttctgttgtgattgcgcaccactacaagacaacaagcaagaaaagacaaggtgaaataacaaagtacacatacaaatgcaacttgcaaggcaaaaatgaaccagcaaacaagaagagcaatgaacaagctactgaacagcagagggaaacgatagtcctattttggcaaatatcaaggcttgacctgaatcataaccatgcactttgcccaagaagagaagctaagtttctgaggtctcataaggatatgacagaggaagaaaagagactaataaggacattaaaagagtgtaacataccaactaggagcatgattgtgatattatcatttctccggggtggcttggcagcactaccctacaccaagaaggataatataaaAtacttgcagctaatatggaagaacagagctcagtttgtgcctgtctacttcaagtatgattTctgcccttttatacaaagcacagcactgagtgaagggacaaatagcaggttcaaaagaggagttggaccacaacatagtgtgatgagtttcatgaaagagtatgagaacataaatgatactatcttcaacactgagtacagcaaagattttcaatcaagaacaaagaagccaaaAAcattgtggttcaactatatcattgaagagcaagcgtcagaactatacaatctagagctattcaaaaaattccaaaatgaactaaaggatactttaaggctgcaagtgtctatgctacaacaaggcaaggtatatgaggtgtttgtgtcacctaatagcatccagcaagaatatagacaaaggaaacatatagtgatcattgacttaccaaatgaaaactttagttgcatttgtgggaaattctcaaaggatggaatgctctgttcacatatcctgaaagtgatgttggacctcaatgtgagaaaaattccagagaaatacataattgatagatggagaaaaaaagaaagaaaggaaaaagtgaagaacaccattcctgcagataaatgtgacaactcagttttgatgtttaatgttctttcaaggaagggggcagacatagcttcaaaagcatcaaaaagaaaaAgaacttttcagtacatggttgatgaacttgaaaaattggaaaaaAgtgtagacttgatgattgaacaggaaaatgaaacgcacctgtcagaagatgaaagcaacacaatacccactgaaaatacacagcaagcagaagaagatatgtttgaagaagtggaaatagaagacccaaatatggcaaacacaaaaggaagaaaaccaaaaagatacagaagaatagtggacaagataattgaaagttccaaaaagagaaaagaagctgaagatagcatagcaaagacaagaaagagtagtactcaaaaatctcagcaaacacaacagcagggagGataa
More
|
|||||||
| Protein seq | MKPILEYKQKVSLETEGTKEKHKMKENAGTDIHQLQDIRGSLKESEKDKTETKHIQERSCTITQNSGITATQMPQSPALLHDELNMLNSQGTPVAQLSYTSLMHQVINSPRINIQPNMASLESFTSLLQTPSAFHNSMILTTSRFSPQNTKLNDRNSAIFMPRKQNIYQEFDELYNNNNSITSEIPGDRSMEELYKLQNTHLKSQRIPISWATQDKDQQDYESDQPYNESFHEQDIEEQQTRSEATEISGIQQQQTEAEMNDNLHSAANNGEELSEEDIDNFLQNEEESSLPIDDKHIPKLGMKFKSHTEARGFFNFYAYLAGFSVVIAHHYKTTSKKRQGEITKYTYKCNLQGKNEPANKKSNEQATEQQRETIVLFWQISRLDLNHNHALCPRREAKFLRSHKDMTEEEKRLIRTLKECNIPTRSMIVILSFLRGGLAALPYTKKDNIKYLQLIWKNRAQFVPVYFKYDFCPFIQSTALSEGTNSRFKRGVGPQHSVMSFMKEYENINDTIFNTEYSKDFQSRTKKPKTLWFNYIIEEQASELYNLELFKKFQNELKDTLRLQVSMLQQGKVYEVFVSPNSIQQEYRQRKHIVIIDLPNENFSCICGKFSKDGMLCSHILKVMLDLNVRKIPEKYIIDRWRKKERKEKVKNTIPADKCDNSVLMFNVLSRKGADIASKASKRKRTFQYMVDELEKLEKSVDLMIEQENETHLSEDESNTIPTENTQQAEEDMFEEVEIEDPNMANTKGRKPKRYRRIVDKIIESSKKRKEAEDSIAKTRKSSTQKSQQTQQQGG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | SBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010840 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010560 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010590 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010310 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010170 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010940 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010210 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010410 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010340 | RBH | 0.0 | 0.0 | 0.0 |
