Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_08g0010340 OGI:08034580 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr08:12586929-12595890
Gene Symbol OsTPP1, TPP1
DNA seq

atggagaacgagaagggggaagctaagaagaaaaagaagatctgctccaaatctgaaagtcaactccaaagaaaatttaaagaaggtgagtaaactgcatacctcaattgctaacagcatcttcaaacacaaaattgattgaagttcaccttctttgaatcttgaaaagaaatctggtcaattcccttcaaatcttggtagaaattctgagaataactacatcttgagatgaaaaacacaaatcagtttaaacagtagaccaaatcagtttagattgagatgcaggaacatgcaaaaataaacaactaacaacaaatctgacataaggacatgtcaactcagaactaaaatacagttgacaagatgaaacacagtacatgacctgaacttgtatattcctatacaacattctccttcaaacaaaattttcttccacttcttaacaaaacagatcatacaaattcaagattctccctgaataacaaaatttattacaaaaaaacaatgcataacaaaaacctaagtactatgcagagttttgtttctcacaaagagaactctactgcccgcgccgcgacgacagaaaccaatgcccattgcaaaacacctgacagcaacatagttaaatagccctaatctcccaggtaataggagctaggaatcgtgggcgaggtcctaatggtcctaccaatacaaaaatatgcaacactatagccaatatataatccacatcagtataaaaactaaagtatagcaaattacatacacagatttctaaagttacagttataacaatagcacaattgccatgtaagttttcaaaaattacactatgcagagttttgtttctcactgaactagtgctctatatggactacaaaaaaaaagggaaaagaaccaaataattaacaagtcataaaaattacatgatgaaagatctaaagttacagttgtaactttagtacaaaggtcatgtaagttttcagatttagatttaggcatttaggcatgaaacattaaaatcaaatataatatagcagattacatacaacaaatatacaaagatcatgtaagttttaaatccagctaactaattattttattttatttcataattaaattacatacacagatttctgaagtaacagtagtaactatagtacaatgatcatgtaagtttacatctgattcctatacacttgttaaattttgcaggaaaaaatgtatttggagagtctactcaactgagcaacatgctgggcacaggagcagaacaagtcatcaaagaaaaagaactaataggtatttatttgtgtgatatatgattaaaatcaatcttcccaaaatgcataaactcaaaattacataggcacacatctaatattacatatgtaatttcagtggaattggactgtaactacctatattttcagattttcttttctaaaagactatataatcctatacacttgttaaattttgcaggaaaaaatgtatttggagagtctactcaactgagcgacatgcaggacaaaaaagctaaacaagtcatcaaagaaaagaactaataggtatttatttgtgtgatatatgattaaaatcagtcttcccaaaatgcataaactcaaaattacataggcacacaactaatattacatatgtaatttcagtggaataggactgtaactacctatattttcagattttcttttctaaaagacaatatattcctatacacatgttaaattttgcaggaaaaaatgtatttggagagtctactcaactgagcaacatgcaggacaaaaaagctgaacaagtcatcaaagaaaaagaactaataggtatttatttgtgtgatatatgattaaaatcatgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgtcaaaccctcgtccaggaatcaaccgaggcacacaatgacaatattgataatagagtacaaataattaactaatgaatattcgcaaataaaaattattacagaggtagatagttcctctcaaagaataacattctacgcagcggaaaataaaactataacaaactacggaacagctacgacgactccactccacaggcatcttaaccgagaacaagcctattcctccagatcatcaccttcactgagatactcctcttctgatgaatgaatattgcaagaatgagcatataacatactcaacaagccacacagcaaatatgcaagtgcacaggataacaaaggatggcataatatagctcatttgcagaaaacaacatttaataaatatttaagagaatagtaaaacagttgaataattaatcaatattaaacaaacaccatacaacacacccgtattgcataggcccaaccacatttgaacaaccaaccccagttgaacaaatgaaacctccaaaccaggaattaaccattccaaaccaggaatttaaattaattaacacattattaccattaatgagtagtgtgagactaatcacgaaaaacattgctcaactcacccataaccgcgggtacgtctattcgaatagtttaaactctgatcagaggtgtaccactgtacccacaagacacaaccccacatcatgtcaccatgtgcctcaataccaccacggtatctcggaaaggaattgtgacaataccccttgcacaacataacctattacagtgcacctttcctggatcataatcacccccttataaacaaggcatggactccccagcgacccccgtggacttctcgccacttctcagtctggcgcactataacaaatcacgctaaacaaaagataaagccgttgcccacgctggcttgtggttggcacgataaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcaccaccatcaaaaccatatgctcacaacccaccttaatcaggttttaattatcaattaattatcatcacacgattgaccatcgtgagctaccattgaatataaccataattaataataataattatgtaatataatttatatttaaccccttttagtcaactaatgtttctaggcatggctaagcaaacctatatatagcatttagctgaaccaatccaatatataaggttcatgctaatcaaattataacccataggaaaaataaagtcatcttcggccaataaataactgggaaaggttcaccacccgatgacattcgaaaacaatgcatagttgaaataaaataatagctttaaacgggatcaacatgctcaaagggttgtttgggatctgtgtgacttgccttgggcttccacaaacacttcggaaccttcctcaactgaaacgctctcctccggaacgtcggaaactaaagtaaataaacaaaatcaacaaaacagtacaaaaacaagcataaacagtacatgtggatatttttaacatgtagatcttgattttagaaaaatttagaaacttgaaccacctaaaacggatctacggttatttagttatgattttctgaagttttaatctattagaaaatcggaaaaagaaaaagaaaaggaggcgatgacgtcagccctagaggagatgacgtcagccctggtgacgtcatgctgacgtcagcacgacggccggctcgggtcggagggctcgccggcgctaggtgggtcggccgcggaaacggaaggcatctacgcgtagaggacatcgagacgaacccgatggtactcaccacgtcaacaaacgatgcacgacggcggccggcgacgagaaggaaggcggcggcggctcgggtcgacggcgacgaggggctccggtggtcggcggtgaaagaggaggggcggccgagcttcctctcaccacggcgcacctcttggcgatgacggcaagcgacggcgacggcggaaacggcggcgcgacgttgccgaagacggccggcgacggcggcggacttggagcgcggcgcggcggcgctaggaggcacgggagaggtcgggagagggggcaaacggaagaggacgacgaggggaagctttatatggcattggatcgaagagatcgagctccaaacgagaggaatcgattcgggaagaaatcaaactcggttttggagataaactcgaaaacgaattcgattcgagcaagatactccacggattgctccgtttcttgaggggaaaggaagaggagaacgagaggaacaaaacccctcaaaatcccggaggaatcgggctcggatttgggcggaaacggaggcgcaaaacggcggctagggttcgggctcggcttgcgcggcggccggaggtaggggatggacctgacaggtgggccctacctgtcggcctccacgagagaggggagcgggcagcggcggcttgggccggcgtgggccgcgcgcggggagagagagaaagagggagtcgggccgaaaacggcccaaggaccaagaaggggtttttttgaactttttaaataaaaacaatttataaaatgttgtttcaattattaaaaatacttcccttgctcaaataattcccagaaaattctagaaaatagaggagcaagcatagtatttaataaaattttatctagctcatttttatgttgaaaattttcctagaaaattagggtttagcttgtaggcttttaaaataatttctaaaaatgatttaaaaatatgcatttttaatttggtcgatttttagggcgtgacaaatcagttttcccaaaatgcataaactcaaaattacataggcacacatctaatattacatatgtaatttcactgtaattggactgtaactacctatgttttcagattttcttttctaaaaagactatattttcctatacacttgttaaattttgcaggaacaaaaaagtttggagagtcttctcaactgagcaacatgcaggacagagcagctgaacaaatcatcaaagaaaaagaactaataggtatttatttgtgtgatatatgattaaaatcagttttcccaaaatgcataaactcaaaattacataggcacacaactaatattacatatgtaatttcagtggaataggactgtaactacctatattttcagattttcttttctaaaagactatattcctgtacacttgttaaattttgcaggaacaaaaaagtttggagagtgttcagtgttctcaactgagcaacatgcaggacagagcagctgaacaagttatcaaagaaaaagaactaattggtatttatttgtgtaatatatgattaaaatcagtcttcccaaaatgcataaactcaaaattacataggcacagatctaatattacatatgtaatttcagtggaattggactgtaactaactatattttcagatttgttaaataaaaaacttgcataaactgaaaattttatgaatattttcaggtttgtttacaccaagagttacctacagcccacaagcactgcatgatgagttaacaatgctcaactcacaaacgacacaggttggtttttataaaagcattataaaaatctatgcaattcatattaatttctattatactaacattgaaaaaattgcagccgggaaacatgtcctatactgatctaatgcaacatgtcattaatagtccacgcgttacactacaaccttcccaggtaagaatatttctagttatatttaagtacatataatatggatcagtaataacaaatattgcaggaagggcaacaaaacttcacaaggttgtttcagacaccaacagcatatcatgtaAGCaaaaaaaaaaggagcattgcctatattttgatgacatagaaagaaaaaaaattatacaatcatgcacctataaaaaagtatacatgtactaattttgtttattactaacaatgattaattattttaatcatgcagaactcaatgatcttaacaacaagcagattttccccaaacttgggaacaaatcatgcactccaagcattgaatggaactaccaggaatttgatgaaatttacaacaacagcagtcacaatacttatgaggtaatattaacaacaaatttttccaaacttattaataaaaaactcattgctgtgaactaacatttgtttgaaaaaaatgcagatctcagaatggacaacaattgaagatttgtatgaattgaagaacacacatttcaaatcacaggtatatatatatatatggttcaaaaataaacagttatattgacaagcatagaaaaaaaatagttaaaattaattttgctactaataaacatgcagggaaaatcaagcagtttcacaaatggagatgaacaaccagcaatatacacaaacaatgaacaggtgaaattgaaaacttgacagtgtaattagtagatatcatgcattattcataatagagcttacataatagtactatttaacttttgacaggaaattagtctatgcatacaagatcaacatatggacaaggagaatggaactgctcaagaaacagttgaagaaattcaaatacagcaaacagagcaacatgagacaatgccagaaagcaatgaaacatcaaattcagaacctaacagcagagaagaactaaatgaagaggatattgataatttcttgagaaatgatgaggatggcaatacacaaattgacaaaaagcacatacctgagcttggaatgaaattcaaaacagacaaagaagctcatggcttcttcaacttttacgcttatttagctggtttttctactgtgataactcatcactacaagtcaacaagtaaaaagagaaatgttgagattacaaagtatacatatagatgcaacttgcaaggaaaaaatgaaccagaggacaaaaatgcagaacaagaagaagaagaacaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtggaagaagaagaacaaatagaagaagcaacagaacaagaaaggcaaactaatgttcttaaaaagactggctgcaaatgtatgatgatggtggaaaaaatgtttgccctaggagatgtatggcaaatagcaacactagatttgaagcataaccatgcactttgcctaaggagagaggcaaaatttctgaaatcgcacaagaatatgacaataaaggagaaaaggctaataaggacattgaaggagtgcaacatacccactaggagcatgattgttatcctctcatttctgcgtggtggcttgctagcactaccctacaccaagaaggatgttagtaatgttggaacagcaataaattcagaaacaaggaacaacgacatgaagcaagtgctggcttatctcagaaaaaaagaaatagaagacccaggaatgtcctacaaattcaaactagatgaaaacaacaaagtgactagcatgttttggactgacgggagatcaactcagctatatgaggaatatggtgactgcataagttttgacacaacttacagaacaaacagatataacatgccatttgcaccatttgtaggagttataggccatgggacaacctgtttatttggatgtgcattcctaggtgatgaaacagcagaaactttcaaatgggtttttgaaacatttgcaacagctatgggagggaaacatccaaagactataatcactgatcaagacaatgcaatgagatcagccatagctcaagtgtttcaaaacacaaagcacagaaattgtctatttcacatcaagaaaaactgtagagaaaagacagggagcatgttttctcagaaatcaaacaaaaacctatacgatgaatatgatgacattttgagcaactgcctgacagaagctgagtttgaatcactctagcctcaaatgattgagaagttcaatttgcaaaatgtgaattatttgaagataatgtggaaaaatagagctcagtttgtaccagtctatttcaagtatgatttctgcccttttatacagagcacaacactaagtgaggggacaaacagcagatttaaaagaggagttggaccacacacagtgtaatgagtttcatgaaggaatatgagaatataaatgatactatctttgacactttgtacagcaaagatttccaatcaagaacaaagaagccaaagaccttgtggttcaactatctcattgaagagcaagcatcagaactatacaaccttgaaatattcaagaaattccaactagaactaaaggaaacattgagtttgcaagtatcagtgctacaacaaggtaaagtttatgaagtgtttgtgtcaccaaacagcatacagaaagaatatagaccaaggaagcatatagtcatcgttgacttaccaaatgaaaactatagttgcatctgtggaaagttctcaaaggatggaatgttatgctcacatgtcctgaaagtaatgttggacctgaatgtcagaaaaattccagaaaaatacataattgaaagatggagaaagaaggaaaggaaagaaacaaaaaagcacatcatgcagaaagaaaatggagataattcagtcctaatgtttaatgtgctgtctaggaaaggagctgacatagcttcaaaagcatcaaaaagaaaaaaaacatatgattaccttgtagatgaacttgacaagttggagaagaacattgacttaatgattcaacaggaagatcaaactcaattctcacaacatcaaggcagtggtatagaaattgcaaatgcagagcaacaagagcaagaaaaagatgttcaagaagagcacatagaagatcctgatacagcaaatacaaaggggagaaaaccaaaaaggtatagaagaatagtggagaagataatagaaagttcaaagaagaaaattgaagaacaagaagatgcagaagaaaatcagaataaagcaaggccaaaaaggaataacaatgaaggaaaaccaaacagcgaattcagcaaccaaaggtaa

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CDS seq

atggagaacgagaagggggaagctaagaagaaaaagaagatctgctccaaatctgaaagtcaactccaaagaaaatttaaagaagaactcaatgatcttaacaacaagcagattttccccaaacttgggaacaaatcatgcactccaagcattgaatggaactaccaggaatttgatgaaatttacaacaacagcagtcacaatacttatgagatctcagaatggacaacaattgaagatttgtatgaattgaagaacacacatttcaaatcacagggaaaatcaagcagtttcacaaatggagatgaacaaccagcaatatacacaaacaatgaacaggaaattagtctatgcatacaagatcaacatatggacaaggagaatggaactgctcaagaaacagttgaagaaattcaaatacagcaaacagagcaacatgagacaatgccagaaagcaatgaaacatcaaattcagaacctaacagcagagaagaactaaatgaagaggatattgataatttcttgagaaatgatgaggatggcaatacacaaattgacaaaaagcacatacctgagcttggaatgaaattcaaaacagacaaagaagctcatggcttcttcaacttttacgcttatttagctggtttttctactgtgataactcatcactacaacaaagatttccaatcaagaacaaagaagccaaagaccttgtggttcaactatctcattgaagagcaagcatcagaactatacaaccttgaaatattcaagaaattccaactagaactaaaggaaacattgagtttgcaagtatcagtgctacaacaaggtaaagtttatgaagtgtttgtgtcaccaaacagcatacagaaagaatatagaccaaggaagcatatagtcatcgttgacttaccaaatgaaaactatagttgcatctgtggaaagttctcaaaggatggaatgttatgctcacatgtcctgaaagtaatgttggacctgaatgtcagaaaaattccagaaaaatacataattgaaagatggagaaagaaggaaaggaaagaaacaaaaaagcacatcatgcagaaagaaaatggagataattcagtcctaatgtttaatgtgctgtctaggaaaggagctgacatagcttcaaaagcatcaaaaagaaaaaaaacatatgattaccttgtagatgaacttgacaagttggagaagaacattgacttaatgattcaacaggaagatcaaactcaattctcacaacatcaaggcagtggtatagaaattgcaaatgcagagcaacaagagcaagaaaaagatgttcaagaagagcacatagaagatcctgatacagcaaatacaaaggggagaaaaccaaaaaggtatagaagaatagtggagaagataatagaaagttcaaagaagaaaattgaagaacaagaagatgcagaagaaaatcagaataaagcaaggccaaaaaggaataacaatgaaggaaaaccaaacagcgaattcagcaaccaaaggtaa

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Protein seq

MENEKGEAKKKKKICSKSESQLQRKFKEELNDLNNKQIFPKLGNKSCTPSIEWNYQEFDEIYNNSSHNTYEISEWTTIEDLYELKNTHFKSQGKSSSFTNGDEQPAIYTNNEQEISLCIQDQHMDKENGTAQETVEEIQIQQTEQHETMPESNETSNSEPNSREELNEEDIDNFLRNDEDGNTQIDKKHIPELGMKFKTDKEAHGFFNFYAYLAGFSTVITHHYNKDFQSRTKKPKTLWFNYLIEEQASELYNLEIFKKFQLELKETLSLQVSVLQQGKVYEVFVSPNSIQKEYRPRKHIVIVDLPNENYSCICGKFSKDGMLCSHVLKVMLDLNVRKIPEKYIIERWRKKERKETKKHIMQKENGDNSVLMFNVLSRKGADIASKASKRKKTYDYLVDELDKLEKNIDLMIQQEDQTQFSQHQGSGIEIANAEQQEQEKDVQEEHIEDPDTANTKGRKPKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKRNNNEGKPNSEFSNQR

Function Protein FAR1-RELATED SEQUENCE 7 [UniProtKB/Swiss-Prot:Q9M8J3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_08g0010340 OsNaBo_08g0010340.01 Chr08 12586929 12595890 + NAM
CDS seq

atggagaacgagaagggggaagctaagaagaaaaagaagatctgctccaaatctgaaagtcaactccaaagaaaatttaaagaagaactcaatgatcttaacaacaagcagattttccccaaacttgggaacaaatcatgcactccaagcattgaatggaactaccaggaatttgatgaaatttacaacaacagcagtcacaatacttatgagatctcagaatggacaacaattgaagatttgtatgaattgaagaacacacatttcaaatcacagggaaaatcaagcagtttcacaaatggagatgaacaaccagcaatatacacaaacaatgaacaggaaattagtctatgcatacaagatcaacatatggacaaggagaatggaactgctcaagaaacagttgaagaaattcaaatacagcaaacagagcaacatgagacaatgccagaaagcaatgaaacatcaaattcagaacctaacagcagagaagaactaaatgaagaggatattgataatttcttgagaaatgatgaggatggcaatacacaaattgacaaaaagcacatacctgagcttggaatgaaattcaaaacagacaaagaagctcatggcttcttcaacttttacgcttatttagctggtttttctactgtgataactcatcactacaacaaagatttccaatcaagaacaaagaagccaaagaccttgtggttcaactatctcattgaagagcaagcatcagaactatacaaccttgaaatattcaagaaattccaactagaactaaaggaaacattgagtttgcaagtatcagtgctacaacaaggtaaagtttatgaagtgtttgtgtcaccaaacagcatacagaaagaatatagaccaaggaagcatatagtcatcgttgacttaccaaatgaaaactatagttgcatctgtggaaagttctcaaaggatggaatgttatgctcacatgtcctgaaagtaatgttggacctgaatgtcagaaaaattccagaaaaatacataattgaaagatggagaaagaaggaaaggaaagaaacaaaaaagcacatcatgcagaaagaaaatggagataattcagtcctaatgtttaatgtgctgtctaggaaaggagctgacatagcttcaaaagcatcaaaaagaaaaaaaacatatgattaccttgtagatgaacttgacaagttggagaagaacattgacttaatgattcaacaggaagatcaaactcaattctcacaacatcaaggcagtggtatagaaattgcaaatgcagagcaacaagagcaagaaaaagatgttcaagaagagcacatagaagatcctgatacagcaaatacaaaggggagaaaaccaaaaaggtatagaagaatagtggagaagataatagaaagttcaaagaagaaaattgaagaacaagaagatgcagaagaaaatcagaataaagcaaggccaaaaaggaataacaatgaaggaaaaccaaacagcgaattcagcaaccaaaggtaa

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Protein seq

MENEKGEAKKKKKICSKSESQLQRKFKEELNDLNNKQIFPKLGNKSCTPSIEWNYQEFDEIYNNSSHNTYEISEWTTIEDLYELKNTHFKSQGKSSSFTNGDEQPAIYTNNEQEISLCIQDQHMDKENGTAQETVEEIQIQQTEQHETMPESNETSNSEPNSREELNEEDIDNFLRNDEDGNTQIDKKHIPELGMKFKTDKEAHGFFNFYAYLAGFSTVITHHYNKDFQSRTKKPKTLWFNYLIEEQASELYNLEIFKKFQLELKETLSLQVSVLQQGKVYEVFVSPNSIQKEYRPRKHIVIVDLPNENYSCICGKFSKDGMLCSHVLKVMLDLNVRKIPEKYIIERWRKKERKETKKHIMQKENGDNSVLMFNVLSRKGADIASKASKRKKTYDYLVDELDKLEKNIDLMIQQEDQTQFSQHQGSGIEIANAEQQEQEKDVQEEHIEDPDTANTKGRKPKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKRNNNEGKPNSEFSNQR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0166400 SBH 0.575565 0.658086 1.650285
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g20486 RBH 0.097148 0.247226 0.050150
Nipponbare | IRGSP 1.0 | RAP-db Os08g0166400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0010660 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0021930 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0010840 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0010710 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0010560 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0187800 RBH 0 0.158273 0.013068
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0010590 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0191300 SBH 0 0.0102485 0.044853
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0012280 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0010310 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0010170 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0010940 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0010210 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G010410 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0014270 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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