Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012980 | OGI:08048780 | 5/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:17071613-17072304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcggaagaaattgagtcgtggtgtcgtgggagttattttgtactccgtacatcacaatgctgataacggcgcctacaattgtgagtgtgggctgcagacacatatgggcatcccctgctgtcactccatcagtgtaagtacccctaatatactgcacatcgtatttatcggtacaaatgtttttaattgcactaaaactgattacattaatacaattaggtcatgataaacaaaggcgtgtgcaagatcccagaagctcatatcctaaaaaggtggatgaagaaagcccgtgacataatcccagcccaccttgcaaaatgtgtagagtcatctggcacagcagtagctaaaatgttcaggcacaatctgttggatagtatatcaaatgaagttgtcaagattggagaattagaccccaaggctttccaggttgttctccgccatttaggtgctgctaagaaggaacttgatgaactcagtgcgagcaagcctgtggaggatttctccacagcacctaacgaactggcccatgctgcatctggttctggtgaaggtggtggtttggaaatttacggcagcgaaacgaacattgttgtcagcgtgtcaaagatgaagcccccagcatcaagacggcacacagggcggcccagcaaccatcgttaccattcttcaatggaaggcagagtgtga
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| CDS seq | atgcggaagaaattgagtcgtggtgtcgtgggagttattttgtactccgtacatcacaatgctgataacggcgcctacaattgtgagtgtgggctgcagacacatatgggcatcccctgctgtcactccatcagtgtcatgataaacaaaggcgtgtgcaagatcccagaagctcatatcctaaaaaggtggatgaagaaagcccgtgacataatcccagcccaccttgcaaaatgtgtagagtcatctggcacagcagtagctaaaatgttcaggcacaatctgttggatagtatatcaaatgaagttgtcaagattggagaattagaccccaaggctttccaggttgttctccgccatttaggtgctgctaagaaggaacttgatgaactcagtgcgagcaagcctgtggaggatttctccacagcacctaacgaactggcccatgctgcatctggttctggtgaaggtggtggtttggaaatttacggcagcgaaacgaacattgttgtcagcgtgtcaaagatgaagcccccagcatcaagacggcacacagggcggcccagcaaccatcgttaccattcttcaatggaaggcagagtgtga
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| Protein seq | MRKKLSRGVVGVILYSVHHNADNGAYNCECGLQTHMGIPCCHSISVMINKGVCKIPEAHILKRWMKKARDIIPAHLAKCVESSGTAVAKMFRHNLLDSISNEVVKIGELDPKAFQVVLRHLGAAKKELDELSASKPVEDFSTAPNELAHAASGSGEGGGLEIYGSETNIVVSVSKMKPPASRRHTGRPSNHRYHSSMEGRV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012980 | OsLima_08g0012980.01 | Chr08 | 17071613 | 17072304 | + | NAM | ||
| CDS seq | atgcggaagaaattgagtcgtggtgtcgtgggagttattttgtactccgtacatcacaatgctgataacggcgcctacaattgtgagtgtgggctgcagacacatatgggcatcccctgctgtcactccatcagtgtcatgataaacaaaggcgtgtgcaagatcccagaagctcatatcctaaaaaggtggatgaagaaagcccgtgacataatcccagcccaccttgcaaaatgtgtagagtcatctggcacagcagtagctaaaatgttcaggcacaatctgttggatagtatatcaaatgaagttgtcaagattggagaattagaccccaaggctttccaggttgttctccgccatttaggtgctgctaagaaggaacttgatgaactcagtgcgagcaagcctgtggaggatttctccacagcacctaacgaactggcccatgctgcatctggttctggtgaaggtggtggtttggaaatttacggcagcgaaacgaacattgttgtcagcgtgtcaaagatgaagcccccagcatcaagacggcacacagggcggcccagcaaccatcgttaccattcttcaatggaaggcagagtgtga
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| Protein seq | MRKKLSRGVVGVILYSVHHNADNGAYNCECGLQTHMGIPCCHSISVMINKGVCKIPEAHILKRWMKKARDIIPAHLAKCVESSGTAVAKMFRHNLLDSISNEVVKIGELDPKAFQVVLRHLGAAKKELDELSASKPVEDFSTAPNELAHAASGSGEGGGLEIYGSETNIVVSVSKMKPPASRRHTGRPSNHRYHSSMEGRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0166400 | SBH | 0.575565 | 0.658086 | 1.650285 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016840 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016710 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016670 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017000 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013430 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0260100 | RBH | 0 | 0 | 0.023792 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013470 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010310 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013470 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016530 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010340 | SBH | 0.0 | 0.0 | 0.0 |
