Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0005980 | OGI:08014880 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5273355-5273751 | ||||||||
| Gene Symbol | OsFbox425, Os_F0168 | ||||||||||
| DNA seq | atgcccccgaagaaatccaagccgtccagcGggggcggctccgcggaagaccggttcagcgccctccccgacgcgctcctgcaccacgtcatgtcgttcctgcgggcgtgggaggtggtgcgcacctgcgtgctctcccgccgctggcgccacctctgggcctccgcgccctgcgtcgacctccgcgtctggcgcggcggaggccacctcccgccgccggagcagctcgccaggttcgcctaccgcttgctgttcgagcgggaggtgtcagcgccggtggacatttgtattactgctggcatctgtattactgctggtgctgggttggaagaacaaccggcattctgctgctgcatattaagttgtgtgtcagactcgcagcatagatatgctataa |
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| CDS seq | atgcccccgaagaaatccaagccgtccagcGggggcggctccgcggaagaccggttcagcgccctccccgacgcgctcctgcaccacgtcatgtcgttcctgcgggcgtgggaggtggtgcgcacctgcgtgctctcccgccgctggcgccacctctgggcctccgcgccctgcgtcgacctccgcgtctggcgcggcggaggccacctcccgccgccggagcagctcgccaggttcgcctaccgcttgctgttcgagcgggaggtgtcagcgccggtggacatttgtattactgctggcatctgtattactgctggtgctggcatagatatgctataa |
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| Protein seq | MPPKKSKPSSGGGSAEDRFSALPDALLHHVMSFLRAWEVVRTCVLSRRWRHLWASAPCVDLRVWRGGGHLPPPEQLARFAYRLLFEREVSAPVDICITAGICITAGAGIDML |
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| Function | FBD-associated F-box protein At5g18780 [UniProtKB/Swiss-Prot:Q56YH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0005980 | OsLima_08g0005980.01 | Chr08 | 5273355 | 5273751 | + | NAM | ||
| CDS seq | atgcccccgaagaaatccaagccgtccagcGggggcggctccgcggaagaccggttcagcgccctccccgacgcgctcctgcaccacgtcatgtcgttcctgcgggcgtgggaggtggtgcgcacctgcgtgctctcccgccgctggcgccacctctgggcctccgcgccctgcgtcgacctccgcgtctggcgcggcggaggccacctcccgccgccggagcagctcgccaggttcgcctaccgcttgctgttcgagcgggaggtgtcagcgccggtggacatttgtattactgctggcatctgtattactgctggtgctggcatagatatgctataa
More
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| Protein seq | MPPKKSKPSSGGGSAEDRFSALPDALLHHVMSFLRAWEVVRTCVLSRRWRHLWASAPCVDLRVWRGGGHLPPPEQLARFAYRLLFEREVSAPVDICITAGICITAGAGIDML |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0199000 | SBH | 0.718227 | 0.627723 | 1.580175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09910 | SBH | 0.746192 | 0.723436 | 0.484749 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0199000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006260 | SBH | 0.000000 | 1.851622 | 0.396470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006260 | RBH | 0.084461 | 0.000000 | 0.558428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006490 | SBH | 0.472495 | 1.309993 | 5.654963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006290 | SBH | 0.043356 | 0.022288 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006120 | RBH | 7.088274 | 0.0 | 6.256783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0086100 | RBH | 0.2318045 | 0.4451535 | 0.2860115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006100 | SBH | 0.042123 | 0.170411 | 0.636217 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0089400 | SBH | 0.64496 | 1.318797 | 5.146271 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005950 | RBH | 0.210847 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006120 | SBH | 0.804884 | 5.064410 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005910 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006170 | RBH | 0.000000 | 0.000000 | 0.290822 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006030 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006030 | SBH | 0.156007 | 1.666437 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005880 | RBH | 0.226259 | 0.0 | 0.000000 |
