Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_08g0199000 OGI:08015130 | 8/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr08:5720470-5723936
Gene Symbol OsFbox426, Os_F0184
DNA seq

GGGGGAGCGGCCGCCGCCTCCCGTAAGACTGAGGCAGCAAGAACCACTCCGCCGCCGCGCCGCGCCGAGCCGCGCCGCGCGGTCTCTCCCGGAAGGTCATCTCCTCCGCTCCGATGATCGCAATTCGCAAGTGGTTCGCTCTCTTGCTGGGTTTCCGCTCCAGAAAATCTTGACATCGGCTTGGTTTTCTGTGCTGTCTCGTTCGTGCAGGCCACCTGCTCGACGGAATGTCCCGGAGGACCACCACCGCGCGGTGGGTGCCGCGTGACCGGCCGGAGCCGGCGGGGAGGTCTGGTACCGGCGCGCCGGGTCGTGCATCCCACGCGCTCGGCCAAATGCCTCGGAGGAGGACCACCACCACCACCGCGCGGTGGGTGCCGCGACAAGGGCAGAAGGGGGAGCCCGGTGGCTCAGGCCACGCCGCCGCCCCCGTCGACCGACTCAGCGCCCTCCCGGACACGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCGACCTCTGGGCCTCCGCGCCGTGCGTCGACATCCGCCTGCGGGGCTCCGGCCGCGACGGCGCCCCACCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTGTCGGCCCCTGTGGATACGCTCCGGCTACGGTCGAGCAACGGGGAAGAATATGCCGAGACCTATGACAATGATGATGTCAATATCTGGATATGTTCTGCAATCAAACGCAATGTTCGAGTCATTCACCTTAATGGGCATCGCAAGGATGAACTGGTGCTGGAGCACACTGCTTTTGTCTCTCACCACCTCAAGATCTTGAAGCTGTCGCACATCAAACTTGATGGCAAGATCCTCAAGCAGCTCTCTTCTCAGTGCACTTCTCTGGAAGACCTGGAGCTTAACAACTGTCCAGTTAATGGTGGTGAGATTCTGTCTGTCTCGCTGAAGAAACTGACGATGGTCAAGTGCTCGATCACTATGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATATTATCATGTTCCCTTGTTCGAAAACCTGAGCTCACTGGTTGCCGCCACTATCATGCTTGATGACTCTTTCTTACGCCGTGATGAATTCCTCTATGAGGTTGAAGAGGAAACCAGTGATGATGAGGATGACAATAAGACTACATCAGATCATTGTGATAGTAAAATGGATGCTGATAGTGATGCCTATGATGATGATGACAACGATGACATCCTATATGATGAATATCTGAACAGCCGTCATGGTAATTTGGTTGATGATTACAATTATGGCTCTGATATTGACAGCGATGACGATCTACATGAATATAGTCAGATAGCACATGAATGTAGAGGTGGACGGTATGGCTACTGCCATGACAGCAAACGGCGTGGTAGTTATTATGAGACATGCAAGCTTGCTGATTCTTTCAGTGGCAAGTATTTACTTCGCAGCCTTTCGAGTGCTAGAAGCTTGGAGTTATTAGCTCATTCAGGGGAGGTATTTCAGAACCTTTTTCTTCTGATAAATTTGTATCTAGTCCTTGTCTTCTGTATTTGCATTCTAATACTTATGATAAATAGCAAACGTAGAACTATCTTGTTTTTTTTCTTAGTACTATTCCTCTTATCAACTCAAAAGGTGACACTCAAAATCACAAATAATTGTGTGACTGCCATGTTGCATCCCTGTTTGCTATCTTACTGAACAGAATGGGGAAGATTCTTGCTAATAAAAATAAAAAATGGTCCTGCTAATGGATTTGATTTAATATTGCCTTTGTACTGCTCCTGTACTTTGTAAATATTTGTAAGTAAGCTTTCAATCTCAATATTGAGTTCTGGGATACCTACAAAATAATACTCCTATATGACATTGAAATCAATAATTATAATTTTTATTTGTATGGAATAAGCTAAATTTCTTGACATACGATTTATTCCTCTTTTCCATCCAGGTCTATAATTCGACACTTTGATACTTTAATAATATTGTAGAAACCTTTTGAGGATTATGGTTCACTTGGGAAAAACAAACTTTTTCATAACAAGTGAATAATTTCAGATTTTCGGATGTCCATTGCTAAATGTTGTAGGTGAATAACCTGGGTCCTAGACTTTGTAACTTCTGGAATATGTACTTTATATATTATTTTCAAGTGGATACTGTATGCATTAGCATGGAGTTTATTCTTTGCATATCTTAATGATACTCGTAAGACAGTTCAATGTACATATTTGCTACTGAATGGTACTAATTCCTGGCAGTATATCATTTGGTTATTTGTTGTTTATATTATTCCATTTATTTAGAGTATTAAATATTTTGCTTGCGTGTACACTGCGAAGGTGGTCATGGTTAGGGAACTGAGAAGGTGCTCAACATTTGGCAACTTGAAGACTTTATCCCTTGGAGAGTGGTGTATGGCTGCTGAGTTTGATGGATTAATTTTCTTACTTCAGGAGTCACCTAATTTGGAGATGCTTTTTCTTAAGCTTGAATTGGTATGTATATTTATATAGTTGCTGGATGTTTCTTGATTCCTGTTTTGGGGTTAGTTTTAACATGTTTAGTAATAAATATTTTGTTCTTCAAAAAGAGCTATAGTAACAAGGAGGCAATAAATATTGGTTTCGAACTAAAGGAAAGATCGTTTGCCTGCAAAAATCTTGAAGTGGTGAATATCAGATGCTCTAAAGATGATGAAAGAGTCCATATGTTAGCAGAAATCTTTGTTGCTAATGGGTTACCCATTGAGAAGATTTATGTCCGCAGGACAGGCAGCACCTGTGAGTAATTTTTTGCCTATCAATTTGTACTCTCAGTTCACAACATTTATGTTATTTGATTACATTCTTCCGGATCTAATTGTTCTTTACTAATTAAACCAAAAATTACCTTGTTATTGAATACTATGTTTAAATGGTCAAATACAAGCAACAAGTAATGCCTTATAGCTTTCCTCCAGTCAGCATGCTCTGTTATTCTACCTCTATATTTTTGTTCCGTGTGATAATCTTAAATCATAAGCCATTGGCTCTTTGATATTTCTTACAGACCTCCGTAGCATGAAAATTATAAGGGAAATGGCCAGGGATGAGCTATGAGAAGCTGGGGAGTACGTTCTGTAATGCCTATAAACACCATGGAAGCAGAGAATTTATGCAGACATTCAATTAATTGTTCAAATCAATCTGATGAGTGCAAAAAAAAAAATTCTTTTTATAGATTCTAAGGGCCTGATGCAAACAAAGTTCGACTACAAGCATACTGCTTACTCATCCAAAGCTGTGATCGAGCTTACCTGAGAGGTTGAGACGAAGAATTTTTGAGTAAAGGAGTAACTATGTAATTATTTAGGTAAATTTTAGTATTCTCCTCGATCTGCACATTCTTCCACTTGAGCATCCACTTTTGATGGGC

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CDS seq

ATGTCCCGGAGGACCACCACCACCACCGCGCGGTGGGTGCCGCGACAAGGGCAGAAGGGGGAGCCCGGTGGCTCAGGCCACGCCGCCGCCCCCGTCGACCGACTCAGCGCCCTCCCGGACACGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCGACCTCTGGGCCTCCGCGCCGTGCGTCGACATCCGCCTGCGGGGCTCCGGCCGCGACGGCGCCCCACCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTGTCGGCCCCTGTGGATACGCTCCGGCTACGGTCGAGCAACGGGGAAGAATATGCCGAGACCTATGACAATGATGATGTCAATATCTGGATATGTTCTGCAATCAAACGCAATGTTCGAGTCATTCACCTTAATGGGCATCGCAAGGATGAACTGGTGCTGGAGCACACTGCTTTTGTCTCTCACCACCTCAAGATCTTGAAGCTGTCGCACATCAAACTTGATGGCAAGATCCTCAAGCAGCTCTCTTCTCAGTGCACTTCTCTGGAAGACCTGGAGCTTAACAACTGTCCAGTTAATGGTGGTGAGATTCTGTCTGTCTCGCTGAAGAAACTGACGATGGTCAAGTGCTCGATCACTATGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATATTATCATGTTCCCTTGTTCGAAAACCTGAGCTCACTGGTTGCCGCCACTATCATGCTTGATGACTCTTTCTTACGCCGTGATGAATTCCTCTATGAGGTTGAAGAGGAAACCAGTGATGATGAGGATGACAATAAGACTACATCAGATCATTGTGATAGTAAAATGGATGCTGATAGTGATGCCTATGATGATGATGACAACGATGACATCCTATATGATGAATATCTGAACAGCCGTCATGGTAATTTGGTTGATGATTACAATTATGGCTCTGATATTGACAGCGATGACGATCTACATGAATATAGTCAGATAGCACATGAATGTAGAGGTGGACGGTATGGCTACTGCCATGACAGCAAACGGCGTGGTAGTTATTATGAGACATGCAAGCTTGCTGATTCTTTCAGTGGCAAGTATTTACTTCGCAGCCTTTCGAGTGCTAGAAGCTTGGAGTTATTAGCTCATTCAGGGGAGGTATTTCAGAACCTTTTTCTTCTGATAAATTTGTATCTAGTCCTTGTCTTCTGTATTTGCATTCTAATACTTATGATAAATAGCAAACGTAGAACTATCTTGTTTTTTTTCTTAGTACTATTCCTCTTATCAACTCAAAAGGTGACACTCAAAATCACAAATAATTGTGTGACTGCCATGTTGCATCCCTGTTTGCTATCTTACTGA

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Protein seq

MSRRTTTTTARWVPRQGQKGEPGGSGHAAAPVDRLSALPDTLLHHVMSFLKAWEVVRTCVLSRRWRDLWASAPCVDIRLRGSGRDGAPPEDFGRFVYRLLLAREVSAPVDTLRLRSSNGEEYAETYDNDDVNIWICSAIKRNVRVIHLNGHRKDELVLEHTAFVSHHLKILKLSHIKLDGKILKQLSSQCTSLEDLELNNCPVNGGEILSVSLKKLTMVKCSITMDLSICAPNLELLCCITPYYHVPLFENLSSLVAATIMLDDSFLRRDEFLYEVEEETSDDEDDNKTTSDHCDSKMDADSDAYDDDDNDDILYDEYLNSRHGNLVDDYNYGSDIDSDDDLHEYSQIAHECRGGRYGYCHDSKRRGSYYETCKLADSFSGKYLLRSLSSARSLELLAHSGEVFQNLFLLINLYLVLVFCICILILMINSKRRTILFFFLVLFLLSTQKVTLKITNNCVTAMLHPCLLSY

Function F-box/FBD/LRR-repeat protein At5g56420 [UniProtKB/Swiss-Prot:Q9FM89]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_08g0199000 OsNip_08t0199000-01 Chr08 5720470 5723936 + RAP2018-11-26
CDS seq

ATGTCCCGGAGGACCACCACCACCACCGCGCGGTGGGTGCCGCGACAAGGGCAGAAGGGGGAGCCCGGTGGCTCAGGCCACGCCGCCGCCCCCGTCGACCGACTCAGCGCCCTCCCGGACACGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGCCGCTGGCGCGACCTCTGGGCCTCCGCGCCGTGCGTCGACATCCGCCTGCGGGGCTCCGGCCGCGACGGCGCCCCACCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTGTCGGCCCCTGTGGATACGCTCCGGCTACGGTCGAGCAACGGGGAAGAATATGCCGAGACCTATGACAATGATGATGTCAATATCTGGATATGTTCTGCAATCAAACGCAATGTTCGAGTCATTCACCTTAATGGGCATCGCAAGGATGAACTGGTGCTGGAGCACACTGCTTTTGTCTCTCACCACCTCAAGATCTTGAAGCTGTCGCACATCAAACTTGATGGCAAGATCCTCAAGCAGCTCTCTTCTCAGTGCACTTCTCTGGAAGACCTGGAGCTTAACAACTGTCCAGTTAATGGTGGTGAGATTCTGTCTGTCTCGCTGAAGAAACTGACGATGGTCAAGTGCTCGATCACTATGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATATTATCATGTTCCCTTGTTCGAAAACCTGAGCTCACTGGTTGCCGCCACTATCATGCTTGATGACTCTTTCTTACGCCGTGATGAATTCCTCTATGAGGTTGAAGAGGAAACCAGTGATGATGAGGATGACAATAAGACTACATCAGATCATTGTGATAGTAAAATGGATGCTGATAGTGATGCCTATGATGATGATGACAACGATGACATCCTATATGATGAATATCTGAACAGCCGTCATGGTAATTTGGTTGATGATTACAATTATGGCTCTGATATTGACAGCGATGACGATCTACATGAATATAGTCAGATAGCACATGAATGTAGAGGTGGACGGTATGGCTACTGCCATGACAGCAAACGGCGTGGTAGTTATTATGAGACATGCAAGCTTGCTGATTCTTTCAGTGGCAAGTATTTACTTCGCAGCCTTTCGAGTGCTAGAAGCTTGGAGTTATTAGCTCATTCAGGGGAGGTATTTCAGAACCTTTTTCTTCTGATAAATTTGTATCTAGTCCTTGTCTTCTGTATTTGCATTCTAATACTTATGATAAATAGCAAACGTAGAACTATCTTGTTTTTTTTCTTAGTACTATTCCTCTTATCAACTCAAAAGGTGACACTCAAAATCACAAATAATTGTGTGACTGCCATGTTGCATCCCTGTTTGCTATCTTACTGA

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Protein seq

MSRRTTTTTARWVPRQGQKGEPGGSGHAAAPVDRLSALPDTLLHHVMSFLKAWEVVRTCVLSRRWRDLWASAPCVDIRLRGSGRDGAPPEDFGRFVYRLLLAREVSAPVDTLRLRSSNGEEYAETYDNDDVNIWICSAIKRNVRVIHLNGHRKDELVLEHTAFVSHHLKILKLSHIKLDGKILKQLSSQCTSLEDLELNNCPVNGGEILSVSLKKLTMVKCSITMDLSICAPNLELLCCITPYYHVPLFENLSSLVAATIMLDDSFLRRDEFLYEVEEETSDDEDDNKTTSDHCDSKMDADSDAYDDDDNDDILYDEYLNSRHGNLVDDYNYGSDIDSDDDLHEYSQIAHECRGGRYGYCHDSKRRGSYYETCKLADSFSGKYLLRSLSSARSLELLAHSGEVFQNLFLLINLYLVLVFCICILILMINSKRRTILFFFLVLFLLSTQKVTLKITNNCVTAMLHPCLLSY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.718227 0.627723 1.580175

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0199100 RBH 0.440367 0.732251 2.732985
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g09910 RBH 0.746192 0.723436 0.484749
Nipponbare | IRGSP 1.0 | RAP-db Os08g0199000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0006410 RBH 0.573773 4.858237 0.844859
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0006380 SBH 0.082690 0.512563 0.750620
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0006490 SBH 0.472495 1.309993 5.654963
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0006360 SBH 0.057520 0.073083 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0006240 SBH 2.166631 0.000000 2.440747
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0087600 SBH 3.5424985 6.4028955 7.93646
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0006100 SBH 0.042123 0.170411 0.636217
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0090700 SBH 3.4717045 6.8192005 23.3364375
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0006070 SBH 0.082024 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0006120 SBH 0.804884 5.064410 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0006060 SBH 0.874249 5.818411 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0006240 SBH 0.326882 0.311805 0.701440
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0006090 SBH 0.067503 1.737335 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G006090 SBH 0.358511 0.866641 1.211589
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0005970 SBH 0.318537 0.000000 2.249217
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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