Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0199100 | OGI:08015180 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5727989-5732044 | ||||||||
| Gene Symbol | OsFbox427, Os_F0221 | ||||||||||
| DNA seq | CCTTTACCAAAGGCTGTCTACTTTTTGGTGGAGGGGAATGCCCATCCACCGGAAGAAGCAAGCCTCGGACTGAGGTCGCAGCTCAAAGCCTCGGACCACTCCGCCGCCGCGCCGGCGATCTCCTCCGGTAGGTCATCTCCTCCGCTCCGATCATCGCAGCGCGCCACTGGTCGGTCTCTTGCCCCGCTGCAGAGAAATCTTGATCTCGTCTCGCTTTTCTTGGCTGTCTCGTTCGTGCAGGCCACCCGCTCGACGGAATGTCCCGGAGAAACACCACCGGGTGGCCGGTGCCTCGTGGCGGGGCGGAGCCGACGGGGAAGCCAGGGCCCAGCGCGCCGGTCCGTGCCGCCCACGCGTTCGGCCAAATGCCTCGGAGGAGGACCACCACCACCGCGCGGTGGGTGCGGCGCCACCAAGTGCACAAGGGGAAGCCCCGCGGCGCCGCCACCGTCGACCGACTCAGCGCCCTCCCGGACGCGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGCCGCTGGCGCCACACCTGGGCCTCCGCGCCGTGCGTTGACATCCGCGCTCCGAGCTCTCGCCGCGAGCGGGGTCCCGGCCGCGACAGCGACCCGCCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTTTCCGCACCGGTTGACACGCTCCGGCTGCGGTCGAGCAACGGGGAGGAATATGCCGAGATGTATGACAATGATGATGTCAACATGTGGATCTCTTCTGCGATCAAACGCAATGCTCGAGTCATTCACCTTAACGGGCACCGCGAGGACGACGACCTGGTGTTGGAGCACACTGCCTTTGTCTCTCAACGCCTCAAGATCTTGAAGCTGTCGAACGTCAATCTTGATTGGAAGATCCCCAGACAGCTCTCTTCTCGGTGCACTTCCCTTACAGAGCTAGAGCTTAACAATTGCCCGGTTAATGGCGGCGAGATTTCGTCCGTCTCACTGAAGAAACTGAGGATGGTCAAATGCTTGATCACTGTGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATACCATCGTGTTCCCTTGTTCAAAAACCTGAGCTCACTGGTTGCCGCCACTATCGTACTTGATGACTCTTTCTTGTGCCGTGACGATTTCCTCCATGAGGATGAAAGGGGAAGCAGCGATGATGAGGATGACAATAAGACTATATCAGATCATTATGATAAAATGGTTACTAATAGTGATGCATGTGGTGATGGTAATTTGGTTGATGAATACAATTATGGCTCTGATATTGACAGTGATGACGATATATATGAATATAGTCAGATAGCAAATGAATGTAGAGATGGAAAGTATAGCCACTGCCATGACAGTGAATGCTGCAGTAGTTATCATGACACTTGCAAGCTTGCCAATTCTTTCAGTGGCCAGGATTTGCTTTGCAGCCTTTCGAATGCCAGAAGCTTGGAGTTACTAGCTCATTCAGGGGAGGTATTTCAGGACCTTTTTCTTCTGATAAATTTGTATCAAGTCTTGTTTCCTGTACTTGCATTATAATAGTTATGATTATGATAAATAGCACATGTAGAACAAACTTGTTTCTTTTCTTGGTACTATTCGTCTTATCAATTCAAAAGATGGCACTCAAAATCACAAAGAATTGTGTGTGCCTGCCAATGTTGCATCCCTGTTTGCTATCTTACTGAACAGAATGGGGAAGATTCTTGCTAATAAAAAAAATGAAATGGTTCTGCTAATGGGTTTGTTTCACTCTTGCCTTTGTACTGCCTATGTACTCTGCAAATATTTATAAGTAGGGAACATATCCTATGCACACTAGTTTCCCGTGCACACTCCGTGCACACCAACTAGCAAATGTCACGAAAAATTATACAAAAAATTGTACACTTACTTCGAATAGCACTACACCTACATGTGAAATTTTATCTTCAAATTCATTATATTTTAGCCGTAATAAAAAAAGACAAAATTCTGACATTTTTTACCCTTAAAACTGTCAGATTTTCAGATTTTTCACTTTTTTTTGATGGAGATTTTTCACTTTTTTGTTATGACTAAAATATAATGAATTTGAATATGATACTTTGTATATATGTGTAATATTAATAGGAGTAAATACCCAATTTTTTGTATAATTTTTTGTGACATTTGCTAGTTGGTGTGCACGGAGTGTGCACGGGAAGCTTTTCATCTCAATATTGAATGATTTGTTCCTGAGTTCTGGGATAGTAGCGCGGCTTACAAAATAATACTCTTATATGACATTGAAATCAATAATCGTGATTTATATTATACAATAAGCTAAATTTCTGGACATATGAAATATTCCTCTTTTTATGATCTATAATTATATTGTGAAAACCTTCGAGGATTATTAGTCACTTGGGAAAAACAAACCATTTCAGAACAAGTGAATAATTTCTGATTTTCTGTTGTCCATTGTTAAATGTTGTAGGTGAATAAACAGGTTCCTAGACTTTCTAACTTCTGGAATATGTACTTTACACATCATTTTCAAGTGGATACTGTATGCATTAGCATGGAGTTTATTTTTAGTGATACTCTTAAGACAGTTCAATATACATATTTGCAACTGAAAAGAACTAGATCCTTGCAGTATATCATTTGGTTATTTGTTGTTTATATTATTCCATTTATTTAGAGTATTAAATAGTTTGCTTGTGTGTACACTGCGAAGGTGGTCATGGTTAGGGAACTGAGAAGGTGCTCAACATTTGGCAACTTGAAGACCTTATCCCTTGGTGAGTGGTGTATGGCTGCTGAGTTTGATGGATTAATTTTCTTACTTCAGGAGACACCTAATTTGGAGAGGCTTTTTCTTAAGCTTGAATTGGTACGTATATTCACGTGGTGGATGTTTCTTGATTGTTCTTTTGGGGGTTAGTTTTAACATGTTTGGTAACAAATATGTTCTTATGCAAAAAAAGAACTACGATAACAAGGAGGCAGTAAATATTGGTGTCAAACTAAAGGAAAGATCATTTGCCTGCAAAAATCTTGAAGTGGTGAATATTAGATGCTCTAAAGATGATGGAAGAGTCCATATGTTAGCAGAACTCTTTGGTGCTAATGGGTTACCTCTTGAGAAGATTTTTGTTCGCCGAACAGGCAGCACCTGTGAGTAATTCTTTCTGATGTCCTTATGTTCCTTTTTACCCATGTATTTGCAGTCTTTATGTTACTCGATTACAGTCTTCTAGATCTAAGATATTATGTTCCTTACAAGCTAAAAAGAAAATGGCCTTGTTTCGATGTTGTAATTATGCTTAAATTGGTAGATACAAGCAAGAACTTAAATCTCAAAATTTTCTTTGCTCTAATAAATGTGCTATGTGTGTTGAAAAAAGAAATAAATAAATGTGCTATGTTATTCCATCTCTATATATCTGTTCCTTGTTGTGACAATCTAAAACATAAGCCGTTGGCTTTTACATGTTTCTTGCAGACCTTCGTAACATGAAAAAAATGAGAAAAATTGCCAGGGATGAGCTGCGAAAAGCTAGGTGGTTCCAGCTGTTAAATCTATAAACACTACGTAAGCAACAAAATTACTTGTCTTTTACTTTTTGTTAAAATGCTTTCTGATGACTGCAAAACATTTTTCTTAATAGATTCTAAGGACCTGATGGCCAACAAAGTTAGACTTCAAGCACACTGATTACTCGTCCAAAGTTGTGATCGAGCTTACCTCGGCCCAAGAAATGTTACAAAATAACTATGCGATTATTTAGGTAAATTTTAGTTTCTTTCCTCGATCTGCACATTTCTTCCACTTGGGCATCAACCTTTGATGGGCATGTGTTGTGCTGTGTGCTGATGCTTGAACAAAGTTTGTTTTAGTCAGAAGTTTCTCATGCTCCTCTGGGCATGATGAAACCGTGACTGCCAATTGTAAGCAGCTAGCTTCAGGCAGTGCTACAGAATGGTTGGTTTTACTTGTGTGTCATGCTTGAGCTTGCATTGTTTGCGTAAC
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| CDS seq | ATGTCCCGGAGAAACACCACCGGGTGGCCGGTGCCTCGTGGCGGGGCGGAGCCGACGGGGAAGCCAGGGCCCAGCGCGCCGGTCCGTGCCGCCCACGCGTTCGGCCAAATGCCTCGGAGGAGGACCACCACCACCGCGCGGTGGGTGCGGCGCCACCAAGTGCACAAGGGGAAGCCCCGCGGCGCCGCCACCGTCGACCGACTCAGCGCCCTCCCGGACGCGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGCCGCTGGCGCCACACCTGGGCCTCCGCGCCGTGCGTTGACATCCGCGCTCCGAGCTCTCGCCGCGAGCGGGGTCCCGGCCGCGACAGCGACCCGCCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTTTCCGCACCGGTTGACACGCTCCGGCTGCGGTCGAGCAACGGGGAGGAATATGCCGAGATGTATGACAATGATGATGTCAACATGTGGATCTCTTCTGCGATCAAACGCAATGCTCGAGTCATTCACCTTAACGGGCACCGCGAGGACGACGACCTGGTGTTGGAGCACACTGCCTTTGTCTCTCAACGCCTCAAGATCTTGAAGCTGTCGAACGTCAATCTTGATTGGAAGATCCCCAGACAGCTCTCTTCTCGGTGCACTTCCCTTACAGAGCTAGAGCTTAACAATTGCCCGGTTAATGGCGGCGAGATTTCGTCCGTCTCACTGAAGAAACTGAGGATGGTCAAATGCTTGATCACTGTGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATACCATCGTGTTCCCTTGTTCAAAAACCTGAGCTCACTGGTTGCCGCCACTATCGTACTTGATGACTCTTTCTTGTGCCGTGACGATTTCCTCCATGAGGATGAAAGGGGAAGCAGCGATGATGAGGATGACAATAAGACTATATCAGATCATTATGATAAAATGGTTACTAATAGTGATGCATGTGGTGATGGTAATTTGGTTGATGAATACAATTATGGCTCTGATATTGACAGTGATGACGATATATATGAATATAGTCAGATAGCAAATGAATGTAGAGATGGAAAGTATAGCCACTGCCATGACAGTGAATGCTGCAGTAGTTATCATGACACTTGCAAGCTTGCCAATTCTTTCAGTGGCCAGGATTTGCTTTGCAGCCTTTCGAATGCCAGAAGCTTGGAGTTACTAGCTCATTCAGGGGAGGTATTTCAGGACCTTTTTCTTCTGATAAATTTGTATCAAGTCTTGTTTCCTGTACTTGCATTATAA
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| Protein seq | MSRRNTTGWPVPRGGAEPTGKPGPSAPVRAAHAFGQMPRRRTTTTARWVRRHQVHKGKPRGAATVDRLSALPDALLHHVMSFLKAWEVVRTCVLSRRWRHTWASAPCVDIRAPSSRRERGPGRDSDPPEDFGRFVYRLLLAREVSAPVDTLRLRSSNGEEYAEMYDNDDVNMWISSAIKRNARVIHLNGHREDDDLVLEHTAFVSQRLKILKLSNVNLDWKIPRQLSSRCTSLTELELNNCPVNGGEISSVSLKKLRMVKCLITVDLSICAPNLELLCCITPYHRVPLFKNLSSLVAATIVLDDSFLCRDDFLHEDERGSSDDEDDNKTISDHYDKMVTNSDACGDGNLVDEYNYGSDIDSDDDIYEYSQIANECRDGKYSHCHDSECCSSYHDTCKLANSFSGQDLLCSLSNARSLELLAHSGEVFQDLFLLINLYQVLFPVLAL |
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| Function | MEIOTIC F-BOX protein MOF [UniProtKB/Swiss-Prot:Q7X7A4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0199100 | OsNip_08t0199100-01 | Chr08 | 5728025 | 5729681 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCCCGGAGAAACACCACCGGGTGGCCGGTGCCTCGTGGCGGGGCGGAGCCGACGGGGAAGCCAGGGCCCAGCGCGCCGGTCCGTGCCGCCCACGCGTTCGGCCAAATGCCTCGGAGGAGGACCACCACCACCGCGCGGTGGGTGCGGCGCCACCAAGTGCACAAGGGGAAGCCCCGCGGCGCCGCCACCGTCGACCGACTCAGCGCCCTCCCGGACGCGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGCCGCTGGCGCCACACCTGGGCCTCCGCGCCGTGCGTTGACATCCGCGCTCCGAGCTCTCGCCGCGAGCGGGGTCCCGGCCGCGACAGCGACCCGCCGGAGGACTTCGGCAGGTTCGTGTACCGCCTGTTGCTGGCGCGGGAGGTTTCCGCACCGGTTGACACGCTCCGGCTGCGGTCGAGCAACGGGGAGGAATATGCCGAGATGTATGACAATGATGATGTCAACATGTGGATCTCTTCTGCGATCAAACGCAATGCTCGAGTCATTCACCTTAACGGGCACCGCGAGGACGACGACCTGGTGTTGGAGCACACTGCCTTTGTCTCTCAACGCCTCAAGATCTTGAAGCTGTCGAACGTCAATCTTGATTGGAAGATCCCCAGACAGCTCTCTTCTCGGTGCACTTCCCTTACAGAGCTAGAGCTTAACAATTGCCCGGTTAATGGCGGCGAGATTTCGTCCGTCTCACTGAAGAAACTGAGGATGGTCAAATGCTTGATCACTGTGGACCTCTCGATCTGTGCTCCAAACCTTGAGTTGCTATGCTGCATCACCCCATACCATCGTGTTCCCTTGTTCAAAAACCTGAGCTCACTGGTTGCCGCCACTATCGTACTTGATGACTCTTTCTTGTGCCGTGACGATTTCCTCCATGAGGATGAAAGGGGAAGCAGCGATGATGAGGATGACAATAAGACTATATCAGATCATTATGATAAAATGGTTACTAATAGTGATGCATGTGGTGATGGTAATTTGGTTGATGAATACAATTATGGCTCTGATATTGACAGTGATGACGATATATATGAATATAGTCAGATAGCAAATGAATGTAGAGATGGAAAGTATAGCCACTGCCATGACAGTGAATGCTGCAGTAGTTATCATGACACTTGCAAGCTTGCCAATTCTTTCAGTGGCCAGGATTTGCTTTGCAGCCTTTCGAATGCCAGAAGCTTGGAGTTACTAGCTCATTCAGGGGAGGTATTTCAGGACCTTTTTCTTCTGATAAATTTGTATCAAGTCTTGTTTCCTGTACTTGCATTATAA
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| Protein seq | MSRRNTTGWPVPRGGAEPTGKPGPSAPVRAAHAFGQMPRRRTTTTARWVRRHQVHKGKPRGAATVDRLSALPDALLHHVMSFLKAWEVVRTCVLSRRWRHTWASAPCVDIRAPSSRRERGPGRDSDPPEDFGRFVYRLLLAREVSAPVDTLRLRSSNGEEYAEMYDNDDVNMWISSAIKRNARVIHLNGHREDDDLVLEHTAFVSQRLKILKLSNVNLDWKIPRQLSSRCTSLTELELNNCPVNGGEISSVSLKKLRMVKCLITVDLSICAPNLELLCCITPYHRVPLFKNLSSLVAATIVLDDSFLCRDDFLHEDERGSSDDEDDNKTISDHYDKMVTNSDACGDGNLVDEYNYGSDIDSDDDIYEYSQIANECRDGKYSHCHDSECCSSYHDTCKLANSFSGQDLLCSLSNARSLELLAHSGEVFQDLFLLINLYQVLFPVLAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0199100 | OsNip_08t0199100-02 | Chr08 | 5727989 | 5732044 | + | IsoSeq | ||
| CDS seq | TTTACCAAAGGCTGTCTACTTTTTGGTGGAGGGGAATGCCCATCCACCGGAAGAAGCAAGCCTCGGACTGAGGTCGCAGCTCAAAGCCTCGGACCACTCCGCCGCCGCGCCGGCGATCTCCTCCGGCCACCCGCTCGACGGAATGTCCCGGAGAAACACCACCGGGTGGCCGGTGCCTCGTGGCGGGGCGGAGCCGACGGGGAAGCCAGGGCCCAGCGCGCCGGTCCGTGCCGCCCACGCGTTCGGCCAAATGCCTCGGAGGAGGACCACCACCACCGCGCGGTGGGTGCGGCGCCACCAAGTGCACAAGGGGAAGCCCCGCGGCGCCGCCACCGTCGACCGACTCAGCGCCCTCCCGGACGCGCTCCTGCACCACGTCATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGCCGCTGGCGCCACACCTGGGCCTCCGCGCCGTG
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| Protein seq | FTKGCLLFGGGECPSTGRSKPRTEVAAQSLGPLRRRAGDLLRPPARRNVPEKHHRVAGASWRGGADGEARAQRAGPCRPRVRPNASEEDHHHRAVGAAPPSAQGEAPRRRHRRPTQRPPGRAPAPRHVVPQGVGGGAHLRALAPLAPHLGLRAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.440367 | 0.732251 | 2.732985 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0199000 | RBH | 0.718227 | 0.627723 | 1.580175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09920 | RBH | 0.289459 | 0.526554 | 0.801544 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0199100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006420 | RBH | 0.081048 | 9.241530 | 2.057020 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006380 | RBH | 0.082690 | 0.512563 | 0.750620 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006490 | RBH | 0.472495 | 1.309993 | 5.654963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006360 | RBH | 0.057520 | 0.073083 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006240 | RBH | 2.166631 | 0.000000 | 2.440747 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0087600 | RBH | 3.5424985 | 6.4028955 | 7.93646 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006100 | RBH | 0.042123 | 0.170411 | 0.636217 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0090700 | RBH | 3.4717045 | 6.8192005 | 23.3364375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006070 | RBH | 0.082024 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006120 | RBH | 0.804884 | 5.064410 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006060 | RBH | 0.874249 | 5.818411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006240 | RBH | 0.326882 | 0.311805 | 0.701440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006090 | RBH | 0.067503 | 1.737335 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006090 | RBH | 0.358511 | 0.866641 | 1.211589 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005970 | RBH | 0.318537 | 0.000000 | 2.249217 |
