Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027330 | OGI:07078280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:29653201-29678744 | ||||||||
| Gene Symbol | prx109, POX-2, POX8.1, POX8.1, prx110, POX8, POX22.3, POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9, POXGX9, POXgX9, OsPOXgX9, prx112, POX5.1, POX5.1, prx113, POX5, POX3006, POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14 | ||||||||||
| DNA seq | gcatcgcatcgcattgcatctgcaagagtagtagtagtggtgctctggtagtctactgctgcttgatcgatcgatcgatcgccatggcttcttctctgtcagtggccgtgctcctgtgcctcgccgccgccgccgcggcgcagctgtcgccgacgttctacgacacgtcgtgccccagggcgctggccaccatcaagagcgccgtgacgaccgccgtgaacaacgagcctcgcatgggggcgtcactgctcaggctgcacttccatgactgctttgtccaagcaagtccctgatctcatcgatctcatggctaactttagctgcagtaattaataaatctatgttcagttttcgttttgcgtctgattgcaatgtgttcagaattagctaagttatgtgacactgtcaattcagttggactgacagaattactaacgtcaaaaggctagctttggactcgtcactgacactgatacgagattccatttccaagcttagctttgaccatctctagtttgactcaagtaaaaagagagagtaggagttgataacaattgactattagtactcgtaacaattattattattattattattattattattattattattattattattattactattattattattattattattattattattattattattattattattattattttattttgcaactaggactgacaaagtagtagtaactgtcaatttatcaggggtgcgatgcgtccgtactgctggcggacacggccacgttcaccggcgagcagaatgctcttcctaacaagaattctctcagaggcttcaacgtcgtcgacagcatcaagacgcagctcgagggcatctgcagccagaccgtctcctgcgccgacatcctcgccgtcgccgcccgcgactccgtcgtcgcagtaagctagatcatcatcctcgccgccgcaccggccgcttgtgcgacatgaaactcacgacgattaattaaggaattaattaatttcttcttgtggttgcagctgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggtaaactgatcaatcgatcggtttctgaattttctgaagtcatagctcactctacatcgcgatatgacatgatggatgatgcaggtgcgcacacgatcgggcaggcgcagtgcaccaacttcaggggaaggatctacaacgagaccaacatcgacgccggctacgcggcgtcgctcagggccaactgcccgccgacggccggcaccggcgacagcaacctggcggcgctggacacgacgacgccctactccttcgacaccgcctactacagcaacctgctgtccaacaaggggctcctgcactccgaccaggtgctcttcaacggcaacagcacggacaacacggtcaggaacttcgcctccaacagggcggcgttcagcagcgccttctcgtcggccatggtgaagatggccaacctcggaccactcatcgggagccagggacagatcaggcttagctgctccaaagtgaactaataattaagtaaagaatcaaactggatacaaaagcaaacacaaatttgggaataaggctgggccatatatgtcacagtagtagtattttactagtctgaaatgtttgctaagagtgttttctctgatcagcacaaagtgtttgaaacagatcaggaagcccatgttatgtaccgatcagtatggttttgaagttatcaaggaatgcatgaatgataatctctaactgtcccttgcttcaatatgtttggctgctaggggcattttagtttgatgccctcaatcttaatgacattcggatggccctttcttcggccatcctggccaaaaaataattaaaaaaggtttaacgcctatcaaaatactaatagtcacaaatgaagacacatgatagaaatagcacaattttcaatgtacaaggtgtatacatattacactgcaccatcctaggaaaatatacagtgaaaaccacctatttgatgaaaactatcgtataaaagtctttaagaaaatcacacatctagataagatgatattaaagaaccatataaaattgcacgaccaaattcaacttcgttcatgagatataaaattatcaaatgtctatgaaaaaacataattcctatttttttttgtcttgttcttcactacttttcattcatacaactcataaataaagtcgagtttggtcttgcaatattgtacaaaacctccgttttttaatagataacgccagtggctttttatcacacgtttgagcattcgcctttattttaaaaaaattatgttattataatttattttgttgtgagttgttttatcactcaaattactttaagcatgatttatatattatacatttgcataaaatttttgaataatacgaatggtcaaatatgtgttcaaaagttaacggcgtcatctattaaaaatgaggagtataattctcaaatatcatcttatctatatgtgtcaattttttttagattttcttgataatttttatgatgttacttacatagtttttaccgttgtgattttcaccgtatatttatccataaaccagagccgttgtgcctaagcatataggtcaaactagagatgatccagaataaagcctagacagttgaggcaacaactggtggtcattttccttggactgggagagcaaaatggttgcataacggtcagagcaagatagaattgtatttggacaaatgcggaccttttgtacgtaatcagtcatgatcatgatggacctacatgttgatgtccagctagctacacgaaaatgacgtgccattatatagctgctgttatatattactctattaattactccataattaatcatactcgcctactagcatggctctttccgatccagagcttatttaatttgtctgttctagctcatccatgatataatatgtagtatactataagtaaccaaaatgtatcaccaaacatacctagactagcaatttagtgtatcaaggaaaatttagcacgtctctgtaccttcagtcttcagtatcataagataccaaatttacactaaaatttaatatttcttgatatctattagggacgaaaatttctcgtctcgaatattaaaatatttggtacctctcaaaaactataaaatttcttgtcttcaatatcaccatatttagcgattaatcaactttttttaatcatccgcatattacactcgacgatgatttttttaaaaaaaatcttgtgggactttgtttatgttttgttgcaattttttatgttctacttatccaatataaaccttgtcactatttgtgtataactgcaagtgttggaagttatattttaagctaatgtcaagttatggctttcaattgaaaaacaacactaatatattctgattttgttgttgtatacatttaaatctcaaaagaaggccattgtaagatgtgcacatatatattcatgaacgccaaatttccgtataattctggctaataattttttctctaactaataattaaacggtactctccgtacgacaatcatatttcgtctttcacagtactgattgtatgtattatatagtgctatgtgtgcgtgtgcgtcttctgatgagcctagaaaggcaacttgccaaggggattgagccataatttgcgggatgcatatataatgtattccagcttatcatgccatggcgcaccaggaagaaaaatctgccgtccgacgcatgccgcctgtttatcttgaccaacaacagcacaatgggctaattaatcagcaaccattccgaatcatacatatatcatattcatgctgcaaatattgtatacgtccggagagagatgtatcgaacaggccctacactgaatgagtgatatacagagttggtgttggatgtagcaatttaagtctgacgctatcacaactgccggatgggggcatgtatgcagatgacgaaacttctattgttcaggttgaacgtcttgtacgtacgcttgtatgccaatgtggacaagttggacttggtggtcacaaagtttggatgtttatatccctacaagagtggcatgcacgtggcagcgtacaaaatctctggctataaatatgcatgcaatgcagcaatctcttgcaagccacgacggccaagcagaaagtgcaattagcctgcaggcagctaatcagtagtagcttgctagccatggcttctgcaactaattcttcacttagcttaatgctgctggtggctgcagctatggcgtcagtggcatcggcgcagctctcggcgacgttctatgacacgtcgtgccccaatgcgttgtccaccatcaagagcgtcataacagccgccgtgaacagcgaggctcgcatgggggcgtcgctgctcaggctgcacttccacgactgcttcgtccaagcaagtttcacacaaccaattgtactaattttcatgaaattatagtatattttggacgagaaaataacagagaacatatatctaaaatcactgcaggggtgcgacgcgtcagttctgctgtccgggcaggagcagaatgctggcccgaacgtggggtcgctgaggggattcagcgtcatcgacaacgccaaggcgcgggtggaggccatctgcaaccagaccgtctcctgcgccgacatcctcgccgtcgccgcccgtgactccgtcgtcgcggtaagaatgtcacagcccttcgatcgcccgtgactttctttctgttgttctttcactgatagagctagctccctcttggtttgcagctgggagggccatcatggacggttctgttggggagaagggactccaccactgca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| CDS seq | atggcttcttctctgtcagtggccgtgctcctgtgcctcgccgccgccgccgcggcgcagctgtcgccgacgttctacgacacgtcgtgccccagggcgctggccaccatcaagagcgccgtgacgaccgccgtgaacaacgagcctcgcatgggggcgtcactgctcaggctgcacttccatgactgctttctgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggcgcacacacgatcgggcaggcgcagtgccagaacttcagggacaggctctacaacgagacaaacatcgactccagcttcgcgacggcgctcaaggccaactgcccacggccgacgggcagcggcgacagcaacctggcgccgctggacacgacgacgcccaacgccttcgacagcgcctactacaccaacctgctgtccaacaagggcctcctgcactccgaccaggtgctcttcaacggcggcagcacggacaacacggtcaggaacttctcttccaacacggcggcgttcaacagcgccttcacggtggccatggtgaagatggggaacatctcgcccttgactggaacccaggggcagatcaggctcaactgctccaagtgtgctctgttccaaagagtagtgatggcttctgcctcttctcttggcctattactgatgctcgcggcgctggtctccacggccaccgcgcatttgtcgccgacgttctacgacacgtcgtgcccccgagccatgtccatcatcaagagcaccgtgacggccgccgtgaacaacgagccacgcatgggcgcgtctctgctcaggctgcacttccacgactgcttcgtccaagcaccttggaggtccgtcatggagtgttccgctagggagaagggattccaccggagccgctaccgcggcccagatagcctcgcacagctcatcagcgcgtacgcgagcaagggacttagcgccactgacttggttgctctctcaggtgcgcacacgattggtatggcacggtgcaggggcttcaggacgaggctatacaacgagaccaacatcgacgccgccttcgcggcggcgctcaaggccaactgcccggcgacgccgggcagcggcgacggcaacctggcgccgctggacacgacgacgcccaccgcgttcgacaacgcctactaccgcaacctgctgtcgaacaaggggctcctgcactccgaccaggagctgttcagcaacggcagcacggacaacacggtcaggagcttcgcgtccagcgcggcggcgttcggcgccgccttcgcgacggccatggtgaagatggggaacatctcgccgctgaccgggacgcagggacagatcaggctcatctgctccgccgtcaactctttagcgatggccaaagcaacttgcatttccttgcttgtggtcgtggctctggccaccgcggcgtcggcgcagctgtcggcgacgttctacgacacgtcgtgccccagagccatgtccatcatcaagagcgccgtgaccgccgccgtgaacagcgaaccccgcatgggcgcgtcgctgctcaggctgcacttccatgactgttttctgggagggccaacgtggactgtcccgctggggagaagggactctacaggtgcaagcgcggcgctcgcgatcagcgacctccctccttttaccgctagcctccaagaactcgtagacgcattcgccaagaagggccttagcgtaaccgacatggttgctctctcaggcgcgcacacgatcgggcaggcgcagtgctcaaccttcaggggcaggatctacaacgagaccaacatcgactcggccttcgcgacgcaacgccaggccaactgcccacggacatccggcgacatgaacctggcgccgctggacacgacgacggcgaacgcgttcgacaacgcctactacaccaacctgctgtcgaacaagggcctcctgcactcggaccaggtgctcttcaacaacggcagcacggacaacacggtgaggaacttcgcgtccaacgcggcggcgttcagcagcgccttcgcgacggccatggtgaacatggggaacatcgcgcccaagacgggaacaaacggccagatcaggctcagctgctccaaggtgaactcgtaa
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| Protein seq | MASSLSVAVLLCLAAAAAAQLSPTFYDTSCPRALATIKSAVTTAVNNEPRMGASLLRLHFHDCFLGGPSWTVGLGRRDSTTASMDSANNDLPPPFFDLENLIKAFGDKGFSVTDMVALSGAHTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKCALFQRVVMASASSLGLLLMLAALVSTATAHLSPTFYDTSCPRAMSIIKSTVTAAVNNEPRMGASLLRLHFHDCFVQAPWRSVMECSAREKGFHRSRYRGPDSLAQLISAYASKGLSATDLVALSGAHTIGMARCRGFRTRLYNETNIDAAFAAALKANCPATPGSGDGNLAPLDTTTPTAFDNAYYRNLLSNKGLLHSDQELFSNGSTDNTVRSFASSAAAFGAAFATAMVKMGNISPLTGTQGQIRLICSAVNSLAMAKATCISLLVVVALATAASAQLSATFYDTSCPRAMSIIKSAVTAAVNSEPRMGASLLRLHFHDCFLGGPTWTVPLGRRDSTGASAALAISDLPPFTASLQELVDAFAKKGLSVTDMVALSGAHTIGQAQCSTFRGRIYNETNIDSAFATQRQANCPRTSGDMNLAPLDTTTANAFDNAYYTNLLSNKGLLHSDQVLFNNGSTDNTVRNFASNAAAFSSAFATAMVNMGNIAPKTGTNGQIRLSCSKVNS |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:A2YPX3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027330 | OsLima_07g0027330.04 | Chr07 | 29672869 | 29678744 | + | NAM | ||
| CDS seq | atggcttctgcctcttctcttggcctattactgatgctcgcggcgctggtctccacggccaccgcgcatttgtcgccgacgttctacgacacgtcgtgcccccgagccatgtccatcatcaagagcaccgtgacggccgccgtgaacaacgagccacgcatgggcgcgtctctgctcaggctgcacttccacgactgcttcgtccaagcaccttggaggtccgtcatggagtgttccgctagggagaagggattccaccggagccgctaccgcggcccagatagcctcgcacagctcatcagcgcgtacgcgagcaagggacttagcgccactgacttggttgctctctcaggtgcgcacacgattggtatggcacggtgcaggggcttcaggacgaggctatacaacgagaccaacatcgacgccgccttcgcggcggcgctcaaggccaactgcccggcgacgccgggcagcggcgacggcaacctggcgccgctggacacgacgacgcccaccgcgttcgacaacgcctactaccgcaacctgctgtcgaacaaggggctcctgcactccgaccaggagctgttcagcaacggcagcacggacaacacggtcaggagcttcgcgtccagcgcggcggcgttcggcgccgccttcgcgacggccatggtgaagatggggaacatctcgccgctgaccgggacgcagggacagatcaggctcatctgctccgccgtcaactctttagcgatggccaaagcaacttgcatttccttgcttgtggtcgtggctctggccaccgcggcgtcggcgcagctgtcggcgacgttctacgacacgtcgtgccccagagccatgtccatcatcaagagcgccgtgaccgccgccgtgaacagcgaaccccgcatgggcgcgtcgctgctcaggctgcacttccatgactgttttctgggagggccaacgtggactgtcccgctggggagaagggactctacaggtgcaagcgcggcgctcgcgatcagcgacctccctccttttaccgctagcctccaagaactcgtagacgcattcgccaagaagggccttagcgtaaccgacatggttgctctctcaggcgcgcacacgatcgggcaggcgcagtgctcaaccttcaggggcaggatctacaacgagaccaacatcgactcggccttcgcgacgcaacgccaggccaactgcccacggacatccggcgacatgaacctggcgccgctggacacgacgacggcgaacgcgttcgacaacgcctactacaccaacctgctgtcgaacaagggcctcctgcactcggaccaggtgctcttcaacaacggcagcacggacaacacggtgaggaacttcgcgtccaacgcggcggcgttcagcagcgccttcgcgacggccatggtgaacatggggaacatcgcgcccaagacgggaacaaacggccagatcaggctcagctgctccaaggtgaactcgtaa
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| Protein seq | MASASSLGLLLMLAALVSTATAHLSPTFYDTSCPRAMSIIKSTVTAAVNNEPRMGASLLRLHFHDCFVQAPWRSVMECSAREKGFHRSRYRGPDSLAQLISAYASKGLSATDLVALSGAHTIGMARCRGFRTRLYNETNIDAAFAAALKANCPATPGSGDGNLAPLDTTTPTAFDNAYYRNLLSNKGLLHSDQELFSNGSTDNTVRSFASSAAAFGAAFATAMVKMGNISPLTGTQGQIRLICSAVNSLAMAKATCISLLVVVALATAASAQLSATFYDTSCPRAMSIIKSAVTAAVNSEPRMGASLLRLHFHDCFLGGPTWTVPLGRRDSTGASAALAISDLPPFTASLQELVDAFAKKGLSVTDMVALSGAHTIGQAQCSTFRGRIYNETNIDSAFATQRQANCPRTSGDMNLAPLDTTTANAFDNAYYTNLLSNKGLLHSDQVLFNNGSTDNTVRNFASNAAAFSSAFATAMVNMGNIAPKTGTNGQIRLSCSKVNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027330 | OsLima_07g0027330.03 | Chr07 | 29653284 | 29663649 | + | NAM | ||
| CDS seq | atggcttcttctctgtcagtggccgtgctcctgtgcctcgccgccgccgccgcggcgcagctgtcgccgacgttctacgacacgtcgtgccccagggcgctggccaccatcaagagcgccgtgacgaccgccgtgaacaacgagcctcgcatgggggcgtcactgctcaggctgcacttccatgactgctttctgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggtgcgcacacgatcgggcaggcgcagtgcaccaacttcaggggaaggatctacaacgagaccaacatcgacgccggctacgcggcgtcgctcagggccaactgcccgccgacggccggcaccggcgacagcaacctggcggcgctggacacgacgacgccctactccttcgacaccgcctactacagcaacctgctgtccaacaaggggctcctgcactccgaccaggtgctcttcaacggcaacagcacggacaacacggtcaggaacttcgcctccaacagggcggcgttcagcagcgccttctcgtcggccatggtgaagatggccaacctcggaccactcatcgggagccagggacagatcaggcttagctgctccaaactcggagggccgtcgtggacggttctattgggaagaagggactccaccactgcgaacgaaagccaagcaaataccgacctccctgccccttcctctagcctcgctgaacttatcggcaatttctccagaaagggactcgacgtaaccgacatggttgctctctcaggcgcacacacgatcgggcaggcgcagtgccagaacttcagggacaggctctacaacgagacaaacatcgactccagcttcgcgacggcgctcaaggccaactgcccacggccgacgggcagcggcgacagcaacctggcgccgctggacacgacgacgcccaacgccttcgacagcgcctactacaccaacctgctgtccaacaagggcctcctgcactccgaccaggtgctcttcaacggcggcagcacggacaacacggtcaggaacttctcttccaacacggcggcgttcaacagcgccttcacggtggccatggtgaagatggggaacatctcgcccttgactggaacccaggggcagatcaggctcaactgctccaaggttaactag
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| Protein seq | MASSLSVAVLLCLAAAAAAQLSPTFYDTSCPRALATIKSAVTTAVNNEPRMGASLLRLHFHDCFLGGPSWTVGLGRRDSTTASMDSANNDLPPPFFDLENLIKAFGDKGFSVTDMVALSGAHTIGQAQCTNFRGRIYNETNIDAGYAASLRANCPPTAGTGDSNLAALDTTTPYSFDTAYYSNLLSNKGLLHSDQVLFNGNSTDNTVRNFASNRAAFSSAFSSAMVKMANLGPLIGSQGQIRLSCSKLGGPSWTVLLGRRDSTTANESQANTDLPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027330 | OsLima_07g0027330.02 | Chr07 | 29653284 | 29663726 | + | NAM | ||
| CDS seq | atggcttcttctctgtcagtggccgtgctcctgtgcctcgccgccgccgccgcggcgcagctgtcgccgacgttctacgacacgtcgtgccccagggcgctggccaccatcaagagcgccgtgacgaccgccgtgaacaacgagcctcgcatgggggcgtcactgctcaggctgcacttccatgactgctttctgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggtgcgcacacgatcgggcaggcgcagtgcaccaacttcaggggaaggatctacaacgagaccaacatcgacgccggctacgcggcgtcgctcagggccaactgcccgccgacggccggcaccggcgacagcaacctggcggcgctggacacgacgacgccctactccttcgacaccgcctactacagcaacctgctgtccaacaaggggctcctgcactccgaccaggtgctcttcaacggcaacagcacggacaacacggtcaggaacttcgcctccaacagggcggcgttcagcagcgccttctcgtcggccatggtgaagatggccaacctcggaccactcatcgggagccagggacagatcaggcttagctgctccaaactgggagggccatcatggacggttctgttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgccccttcctctagcctcgcagaacttatcggcaatttctccagaaagggactcgacgcaaccgacatgctcggagggccgtcgtggacggttctattgggaagaagggactccaccactgcgaacgaaagccaagcaaataccgacctccctgccccttcctctagcctcgctgaacttatcggcaatttctccagaaagggactcgacgtaaccgacatggttgctctctcaggcgcacacacgatcgggcaggcgcagtgccagaacttcagggacaggctctacaacgagacaaacatcgactccagcttcgcgacggcgctcaaggccaactgcccacggccgacgggcagcggcgacagcaacctggcgccgctggacacgacgacgcccaacgccttcgacagcgcctactacaccaacctgctgtccaacaagggcctcctgcactccgaccaggtgctcttcaacggcggcagcacggacaacacggtcaggaacttctcttccaacacggcggcgttcaacagcgccttcacggtggccatggtgaagatggggaacatctcgcccttgactggaacccaggggcagatcaggctcaactgctccaaggttaactag
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| Protein seq | MASSLSVAVLLCLAAAAAAQLSPTFYDTSCPRALATIKSAVTTAVNNEPRMGASLLRLHFHDCFLGGPSWTVGLGRRDSTTASMDSANNDLPPPFFDLENLIKAFGDKGFSVTDMVALSGAHTIGQAQCTNFRGRIYNETNIDAGYAASLRANCPPTAGTGDSNLAALDTTTPYSFDTAYYSNLLSNKGLLHSDQVLFNGNSTDNTVRNFASNRAAFSSAFSSAMVKMANLGPLIGSQGQIRLSCSKLGGPSWTVLLGRRDSTTASEALANTDLPAPSSSLAELIGNFSRKGLDATDMLGGPSWTVLLGRRDSTTANESQANTDLPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027330 | OsLima_07g0027330.01 | Chr07 | 29653284 | 29678744 | + | NAM | ||
| CDS seq | atggcttcttctctgtcagtggccgtgctcctgtgcctcgccgccgccgccgcggcgcagctgtcgccgacgttctacgacacgtcgtgccccagggcgctggccaccatcaagagcgccgtgacgaccgccgtgaacaacgagcctcgcatgggggcgtcactgctcaggctgcacttccatgactgctttctgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggcgcacacacgatcgggcaggcgcagtgccagaacttcagggacaggctctacaacgagacaaacatcgactccagcttcgcgacggcgctcaaggccaactgcccacggccgacgggcagcggcgacagcaacctggcgccgctggacacgacgacgcccaacgccttcgacagcgcctactacaccaacctgctgtccaacaagggcctcctgcactccgaccaggtgctcttcaacggcggcagcacggacaacacggtcaggaacttctcttccaacacggcggcgttcaacagcgccttcacggtggccatggtgaagatggggaacatctcgcccttgactggaacccaggggcagatcaggctcaactgctccaagtgtgctctgttccaaagagtagtgatggcttctgcctcttctcttggcctattactgatgctcgcggcgctggtctccacggccaccgcgcatttgtcgccgacgttctacgacacgtcgtgcccccgagccatgtccatcatcaagagcaccgtgacggccgccgtgaacaacgagccacgcatgggcgcgtctctgctcaggctgcacttccacgactgcttcgtccaagcaccttggaggtccgtcatggagtgttccgctagggagaagggattccaccggagccgctaccgcggcccagatagcctcgcacagctcatcagcgcgtacgcgagcaagggacttagcgccactgacttggttgctctctcaggtgcgcacacgattggtatggcacggtgcaggggcttcaggacgaggctatacaacgagaccaacatcgacgccgccttcgcggcggcgctcaaggccaactgcccggcgacgccgggcagcggcgacggcaacctggcgccgctggacacgacgacgcccaccgcgttcgacaacgcctactaccgcaacctgctgtcgaacaaggggctcctgcactccgaccaggagctgttcagcaacggcagcacggacaacacggtcaggagcttcgcgtccagcgcggcggcgttcggcgccgccttcgcgacggccatggtgaagatggggaacatctcgccgctgaccgggacgcagggacagatcaggctcatctgctccgccgtcaactctttagcgatggccaaagcaacttgcatttccttgcttgtggtcgtggctctggccaccgcggcgtcggcgcagctgtcggcgacgttctacgacacgtcgtgccccagagccatgtccatcatcaagagcgccgtgaccgccgccgtgaacagcgaaccccgcatgggcgcgtcgctgctcaggctgcacttccatgactgttttctgggagggccaacgtggactgtcccgctggggagaagggactctacaggtgcaagcgcggcgctcgcgatcagcgacctccctccttttaccgctagcctccaagaactcgtagacgcattcgccaagaagggccttagcgtaaccgacatggttgctctctcaggcgcgcacacgatcgggcaggcgcagtgctcaaccttcaggggcaggatctacaacgagaccaacatcgactcggccttcgcgacgcaacgccaggccaactgcccacggacatccggcgacatgaacctggcgccgctggacacgacgacggcgaacgcgttcgacaacgcctactacaccaacctgctgtcgaacaagggcctcctgcactcggaccaggtgctcttcaacaacggcagcacggacaacacggtgaggaacttcgcgtccaacgcggcggcgttcagcagcgccttcgcgacggccatggtgaacatggggaacatcgcgcccaagacgggaacaaacggccagatcaggctcagctgctccaaggtgaactcgtaa
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| Protein seq | MASSLSVAVLLCLAAAAAAQLSPTFYDTSCPRALATIKSAVTTAVNNEPRMGASLLRLHFHDCFLGGPSWTVGLGRRDSTTASMDSANNDLPPPFFDLENLIKAFGDKGFSVTDMVALSGAHTIGQAQCQNFRDRLYNETNIDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFNGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKCALFQRVVMASASSLGLLLMLAALVSTATAHLSPTFYDTSCPRAMSIIKSTVTAAVNNEPRMGASLLRLHFHDCFVQAPWRSVMECSAREKGFHRSRYRGPDSLAQLISAYASKGLSATDLVALSGAHTIGMARCRGFRTRLYNETNIDAAFAAALKANCPATPGSGDGNLAPLDTTTPTAFDNAYYRNLLSNKGLLHSDQELFSNGSTDNTVRSFASSAAAFGAAFATAMVKMGNISPLTGTQGQIRLICSAVNSLAMAKATCISLLVVVALATAASAQLSATFYDTSCPRAMSIIKSAVTAAVNSEPRMGASLLRLHFHDCFLGGPTWTVPLGRRDSTGASAALAISDLPPFTASLQELVDAFAKKGLSVTDMVALSGAHTIGQAQCSTFRGRIYNETNIDSAFATQRQANCPRTSGDMNLAPLDTTTANAFDNAYYTNLLSNKGLLHSDQVLFNNGSTDNTVRNFASNAAAFSSAFATAMVNMGNIAPKTGTNGQIRLSCSKVNS
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027330 | OsLima_07g0027330.05 | Chr07 | 29653201 | 29655089 | + | IsoSeq | ||
| CDS seq | atgactgctttgtccaagggtgcgatgcgtccgtactgctggcggacacggccacgttcaccggcgagcagaatgctcttcctaacaagaattctctcagaggcttcaacgtcgtcgacagcatcaagacgcagctcgagggcatctgcagccagaccgtctcctgcgccgacatcctcgccgtcgccgcccgcgactccgtcgtcgcactgggagggccgtcatggacggttggtctcgggaggagggactcaaccacggcgagcatggacagcgctaacaacgacctgcctcctcctttcttcgacctcgagaacctcatcaaggcgttcggcgacaagggtttcagtgtcaccgacatggttgctctctcaggtgcgcacacgatcgggcaggcgcagtgcaccaacttcaggggaaggatctacaacgagaccaacatcgacgccggctacgcggcgtcgctcagggccaactgcccgccgacggccggcaccggcgacagcaacctggcggcgctggacacgacgacgccctactccttcgacaccgcctactacagcaacctgctgtccaacaaggggctcctgcactccgaccaggtgctcttcaacggcaacagcacggacaacacggtcaggaacttcgcctccaacagggcggcgttcagcagcgccttctcgtcggcca
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| Protein seq | MTALSKGAMRPYCWRTRPRSPASRMLFLTRILSEASTSSTASRRSSRASAARPSPAPTSSPSPPATPSSHWEGRHGRLVSGGGTQPRRAWTALTTTCLLLSSTSRTSSRRSATRVSVSPTWLLSQVRTRSGRRSAPTSGEGSTTRPTSTPATRRRSGPTARRRPAPATATWRRWTRRRPTPSTPPTTATCCPTRGSCTPTRCSSTATARTTRSGTSPPTGRRSAAPSRRP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr07 | 29654861 | 29662813 | + | OsLima_07g0027330.02 | OsLima_07g0027330.03,OsLima_07g0027330.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.221365 | 0.326599 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0677100 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48030 | RBH | 0.0 | 0.0 | 6.430494 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0677500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027640 | RBH | 2.869101 | 405.604462 | 1.475809 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027670 | SBH | 0.0 | 193.460403 | 0.936520 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027470 | RBH | 1.305326 | 735.757629 | 6.387176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027240 | RBH | 1.349782 | 12.706379 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027570 | RBH | 2.661448 | 14.622078 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0467000 | RBH | 7.3930235 | 1.8622475 | 0.0355715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028050 | RBH | 1.125385 | 0.019468 | 0.263139 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0480900 | RBH | 4.7324955 | 0.485087 | 0.0138585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027760 | RBH | 0.637116 | 90.985054 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027480 | RBH | 0.0 | 428.885162 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027830 | RBH | 0.649500 | 0.0 | 0.220872 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027370 | RBH | 0.135605 | 7.420961 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027450 | RBH | 1.549415 | 0.000000 | 0.206194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027180 | RBH | 0.654701 | 156.280701 | 2.542739 |
