Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0027370 | OGI:07078280 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:29137345-29139018 | ||||||||
| Gene Symbol | POXGX9, POXgX9, OsPOXgX9, prx112 | ||||||||||
| DNA seq | aagccacgacggccaagcagaaagtgcaattagcctgcaggcagctaatcagtagtagcttgctagccatggcttctgcaactaattcttcacttagcttaatgctgctggtggctgcagctatggcgtcagtggcatcggcgcagctctcggcgacgttctatgacacgtcgtgccccaatgcgttgtccaccatcaagagcgtcataacagccgccgtgaacagcgaggctcgcatgggggcgtcgctgctcaggctgcacttccacgactgcttcgtccaagcaagtttcacacaaccaattgtactaattttcatgaaattatagtatattttggacgagAaaataacagagaacatatatctaaaatcactgcaggggtgcgacgcgtcagttctgctgtccgggcaggagcagaatgctggcccgaacgtggggtcgctgaggggattcagcgtcatcgacaacgccaaggcgcgggtggaggccatctgcaaccagaccgtctcctgcgccgacatcctcgccgtcgccgcccgtgactccgtcgtcgcggtaagaatgtcacagcccttcgatcgcccgtgactttctttctgttgttctttcactgatagagctagctccctcttggtttgcagctgggagggccatcatggacggttctgttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgccccttcctctagcctcgcagaacttatcggcaatttctccagaaagggactcgacgcaaccgacatggttgctctctcaggtaatccgatatggagtattatatacgagtatatatatagatagattaggataccatgtatatatgtgttgcagattttctgataagatgagagcgcgattaattatttcgcaggagcacacacgatcgggcaggcgcagtgccagaacttcagggacaggatctacaacgagaccaacatcgattccgccttcgcgacgcaacgccaggccaactgcccacggccgacgggcagcggcgacagcaacctggcggcgctggacacgacgacgcccaacgccttcgacaacgcctactacagcaacctgctgtcgaacaaGgggGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCAGCGCGGACAACACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGGTGAAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGGCAGATCAGGCTCAGCTGCTCCAAGGTGAACTCCTAATTAAGGAGTAGTATGACGGGATGCGTTCGTTGCTGGAAGCAAATCGTGTCGACGACGACATAAACGGggccacaccacatatacccatatatgtagtataaccacaagtataggtacggtggtgttgtactagtacacgtaaagtatatggcagccagctcgctctagcaatccatcaagtgtatggagcagagcagccatggcattagcacctagtataccaaaataaaagctcctcatgcgaaggcatgcatggaggatcaatgaactgttaccttcacgcacatgtccgttcacaacttctccagacttttacggtacatcaagctcccttttttcaagtaaacaacactag
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| CDS seq | atggcttctgcaactaattcttcacttagcttaatgctgctggtggctgcagctatggcgtcagtggcatcggcgcagctctcggcgacgttctatgacacgtcgtgccccaatgcgttgtccaccatcaagagcgtcataacagccgccgtgaacagcgaggctcgcatgggggcgtcgctgctcaggctgcacttccacgactgcttcctgggagggccatcatggacggttctgttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgccccttcctctagcctcgcagaacttatcggcaatttctccagaaagggactcgacgcaaccgacatggttgctctctcaggagcacacacgatcgggcaggcgcagtgccagaacttcagggacaggatctacaacgagaccaacatcgattccgccttcgcgacgcaacgccaggccaactgcccacggccgacgggcagcggcgacagcaacctggcggcgctggacacgacgacgcccaacgccttcgacaacgcctactacagcaacctgctgtcgaacaaGgggGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCAGCGCGGACAACACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGGTGAAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGGCAGATCAGGCTCAGCTGCTCCAAGGTGAACTCCTAATTAAGGAGTAG
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| Protein seq | MASATNSSLSLMLLVAAAMASVASAQLSATFYDTSCPNALSTIKSVITAAVNSEARMGASLLRLHFHDCFLGGPSWTVLLGRRDSTTASEALANTDLPAPSSSLAELIGNFSRKGLDATDMVALSGAHTIGQAQCQNFRDRIYNETNIDSAFATQRQANCPRPTGSGDSNLAALDTTTPNAFDNAYYSNLLSNKGAPALRPGALQRRQRGQHGQELRVQRGGVQQRLHDGHGEDGEHLAADRDAGADQAQLLQGELLIKE |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q0D3N0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0027370 | OsLaMu_07g0027370.01 | Chr07 | 29137358 | 29139018 | + | NAM | ||
| CDS seq | atggcttctgcaactaattcttcacttagcttaatgctgctggtggctgcagctatggcgtcagtggcatcggcgcagctctcggcgacgttctatgacacgtcgtgccccaatgcgttgtccaccatcaagagcgtcataacagccgccgtgaacagcgaggctcgcatgggggcgtcgctgctcaggctgcacttccacgactgcttcctgggagggccatcatggacggttctgttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgccccttcctctagcctcgcagaacttatcggcaatttctccagaaagggactcgacgcaaccgacatggttgctctctcaggagcacacacgatcgggcaggcgcagtgccagaacttcagggacaggatctacaacgagaccaacatcgattccgccttcgcgacgcaacgccaggccaactgcccacggccgacgggcagcggcgacagcaacctggcggcgctggacacgacgacgcccaacgccttcgacaacgcctactacagcaacctgctgtcgaacaaGgggGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCAGCGCGGACAACACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGGTGAAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGGCAGATCAGGCTCAGCTGCTCCAAGGTGAACTCCTAATTAAGGAGTAG
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| Protein seq | MASATNSSLSLMLLVAAAMASVASAQLSATFYDTSCPNALSTIKSVITAAVNSEARMGASLLRLHFHDCFLGGPSWTVLLGRRDSTTASEALANTDLPAPSSSLAELIGNFSRKGLDATDMVALSGAHTIGQAQCQNFRDRIYNETNIDSAFATQRQANCPRPTGSGDSNLAALDTTTPNAFDNAYYSNLLSNKGAPALRPGALQRRQRGQHGQELRVQRGGVQQRLHDGHGEDGEHLAADRDAGADQAQLLQGELLIKE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0027370 | OsLaMu_07g0027370.02 | Chr07 | 29137345 | 29138946 | + | IsoSeq | ||
| CDS seq | atggacggttctgttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgccccttc |
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| Protein seq | MDGSVGEKGLHHCKRGLGKYRPPCPF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135605 | 7.420961 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0677200 | SBH | 2.916170 | 2.943020 | 3.440416 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48020 | SBH | 1.444166 | 1.648255 | 0.554569 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0677200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027630 | SBH | 0.692229 | 27.330782 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027650 | SBH | 0.000000 | 18.986893 | 0.229096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027460 | SBH | 4.093558 | 168.669250 | 0.170569 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027220 | SBH | 2.096577 | 0.711689 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027570 | SBH | 2.661448 | 14.622078 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0467100 | SBH | 3.735664 | 10.843553 | 0.112144 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028040 | SBH | 0.706351 | 3.363862 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0481000 | SBH | 2.2265265 | 0.7525525 | 0.3815175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027330 | RBH | 0.221365 | 0.326599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027770 | SBH | 0.586791 | 80.518730 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027490 | RBH | 1.143427 | 197.966537 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027820 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016710 | SBH | 0.0 | 6.129101 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027440 | SBH | 0.0 | 1.651773 | 0.376013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027190 | SBH | 0.202710 | 48.413288 | 0.000000 |
