Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0016820 | OGI:03033540 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:13069193-13074134 | ||||||||
| Gene Symbol | prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2 | ||||||||||
| DNA seq | atgggttactcctactcttccgccgccgtggcggtgagcgttttggtggtggcgttggcggcggcggcgtcgggccagctgtcgacgacgttctacgcctcgtcgtgcccgaccgcgctgtcgacgatcaggagcgccgtgaacgcggcggtggccagggagccccgcatgggcgcctccctgctcaggctccacttccacgactgctttgtccaagcaagccccatccattagtcttaaaatcttaattattactactgcccctatacttaattctctattgctttatatgatttttttttcgattacatgattagacacacaccactacacacgtaacactatacttatatatccacgaatgtgtcctcataacacacgtttaaagagatatattcttgatctcagtgaaattctattgggatatactactaacatgaattggctaggtaggatgttgtgatttacgggccagggtgtttggttcacgataacactttaccacaccacaTttttttttgtcacagtttgttagacatatactttgttcagtgtaaccgttatggcttggcttattcacattttttcaatagcatgtctcttatgtcatagacttaattttcttaccaatttcatagggatgcgacgcgtcgatactgctggccgacaatgccaccttccggggggagcagggtgcgttccctaatgtcaactcgctgaggggattcgaggtcatctctagcattaagacgcaactcgaggcatcttgcaggcagaccgtctcctgcgccgacatccttgctgtcgccgCccgcgactccgtcgtcgccgtacgtcgatcccaagcttgctagcttgtctcaaattaattgaacgcaacaactctctccgtcctgtaaaagacaaatctcaaatgagatgtgacacattctaatactacgaatctggatataagatagtagatttatttttcttagacgaagagagcagccattaacactgtacgacatggatgcagctaggagggccatcgtacccggtggagctcgggaggagggacgggatgacgacgaaccaaaccatggcgaacaccaacctccatccaccgaccaccgacctgggtaacttcgtcactagcttcgccgggaaagggctcagccccaccgacctggttgtactcactggtaattaaggctcccatttctggttaattaattacttactcgtttccctgagtacgatttcctaaactacattttgtaagtatTAtatatacatattttaataaaagaaatcaaataaTtttatttttaaatttataatagttaatacttaattaattaattaattatacggtaataacttgttatgttttgcgtgaggctaaaaagctcagttcataagcatattcgaatgcaccctaagtactaagctgcatggggcaagctatatgtcactcaagtgttCtttttttaaaatcgcacgaatgtaatcactatttttttacagtaaaaccaaccatgcatatgtgaagcttgaccgtaatgtagtggatgagtgagcgatgaaactaggtccaacctaacagcttcatcggttttttaaagaaatatcaaatccaaggaaaaatcagaggtacgaaccatgcgatttttaaggaaaaaaaattcacacgagatagatatatagcgaattcgatttgcagtaacatatactccctccgtttcgaaatgtttaacgtcattgactttttagcacatgtttgaccatttgtcttattcaaaaaatttaagtaattattagttctttttctatcatttgattcattgttaaatatatttttatgtaggtatataattttacatatttcacaaaagtttttgaataagacgaacggtccaatatgtgctaaaaaattaatagtgtcaaacattttaaaatggaggatgtagtatataagctctcctactacatacgtaggcctcttgttgcgaggattagatagctacggcccacggttagctgcagctgcttttttttgtgttcagtagatccaagccgatcgatatcaaacagctagaccaacgtatactagctaattaaaattagaaaggacgtggatttttatctctcgagggaatatcctctcattgcttgtatataatctaaatagttattaaaaaatttaaaataaaatatatcacttcacaaacaaatatgtaaggtcaaattcgatttatacctaaggtcataaaatatgttgtatttacgaagggttaatttgagttgtttcagctttaatatacgtgtgtagattccacatcaaactggttaattagctggtgaaagcagcggttttctttatcgttagttggaaaaataaatcagcagtagtgcaacagcaggaggctgccactttcttccttggagatggtgagcaggtgagtaccaccgtcacattgttgccacgtgtctgtgtccgttgctctgtattcccaacctcttctgcctagtttcccacatatgcttttcaaactgtaaaatggtaagttcttttataaaatttctatatgaaagttgtgtaaaaaatcatattgatatattttttttaaaaaatattaataCttaattaattacgtgctaataaactgctccgtttttcgtgcactgaaaatgtgttgggaactggagaaacgatcacactcttctggatccttctcgtgcctcttagcttttgatcaatccaagccgtccttccttaatccaatggctaatataatgttgtatatgtggcacaatgacagagggaataaacattctacgttcatattatgatgatgatttctatgacggagatcattaactaattttgcttgaaactgtccacgtaattgtctatacgttggaaacgtgattattttttaattagatttgtcaaactttcctgtgtttatggatacttgttaatgttgattggaagtactatatataggtgtaaatgttggatgttgaatcaatattgattaaagtgagtccaaaaaaggttgatttaaagtatagtagaaataggttttcaaaaataaatcagccccctttcataatcaagaaaacaacatatatgtcctgtagaatgtgacgcattcgttgcatagtgtttcttataagtccttttcgttgataggatttgttcactgaatgtgaccaagtaactaactcaggtaccctacactcaattatcccctcatatcgctaatcttctgtgcgaaactgggatatgcttaagtcaaccaccgcctttgctcctcatcaaatgtcggtgcatgtagtgttaaaatacgattattggccttatcgagttggttcctatttatttacaaccgtaaattaaagtttttttaagaaatattaaactaaaattcaattgtgtaagcatgtttttatcggaatttgaccggttttagataataaccactcagttatcacagtttttaataaaaccactggggaaatggtttttttttctcttctctacaactattacaaacactcctcatccctttcccctcactcgcgtagtcgcgtgtagcgcattaaaaaaaatcgctagatacaaactgttgctacatgctaaaaaaatcactagaattgaaaaaaacccaaaagaaaaagaaaaagaaaaagaaaagcggttggataaataatatcttgttttatacttagattcacattttatgccctagcctattttcaatggtatggtcatgtttcaatgcccgaacatattaattagtaggagtagcttttttttaactgatttactagaggaactttttctagctttcgaatttccagccatacgatgttgtgttaagattcgcgctatactatttacatataagttacattatagttacagtagttactacaccataactacattataacttctatataatggggacatatccggtgaaaaacatcaaataagttaaaacccgtaaaaactatatctaaaagttcgtgaattcatgaaaaaattattagagataggtataggcatgaaatacattcataccaaaactcaagtccaaactcaacttcatttgagagaaacaaaaagacaaatttctggtgaacagtaacaggacactattcattcactcgaaatttgTttttttttttttctctcaaatgaagttgagtttggacttgagattttgtatgaatgtatttcatgcctatacctatctctaataattttttcatgaattcacaaacttttagatatagttttcacgggttttcatttatttgatggttttcaccggatattccccctatataatttaggtataaaagactgtatttattttatatatacaagttataatattatagtgttatagtataattatggtgaaattatattatatagttacatttaaaagtttttcaataaaaaagcttgcgacgattttaatgaaggaacatttctgcaaacgtccgacacaattaagtggatcttctggctactactgtaactacacatgcaggagcgcacacggtgggcgtggcgcagtgcaccaacttccggtcgcggctctacggcgagtccaacatcaacgcgccgttcgcggcgtcgctccgggcgagctgcccgcaggccggcggcgacaccaacctggcgccgctggactccacccccaatgccttcgacaacgccttcttcaccgacctcatcgccggccgcggcctcctccactccgaccaggagctctaccgcggcgacggctctggcaccgacgccctcgtccgcgtctacgccgccaaccccgcccgcttcaacgccgacttcgccgccgccatggtgcgcatgggcgccatcaggccgctcaccggcacgcagggcgagatcaggctcaactgctccagggtcaactga
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| CDS seq | atgggttactcctactcttccgccgccgtggcggtgagcgttttggtggtggcgttggcggcggcggcgtcgggccagctgtcgacgacgttctacgcctcgtcgtgcccgaccgcgctgtcgacgatcaggagcgccgtgaacgcggcggtggccagggagccccgcatgggcgcctccctgctcaggctccacttccacgactgctttctcgggaggagggacgggatgacgacgaaccaaaccatggcgaacaccaacctccatccaccgaccaccgacctgggagcgcacacggtgggcgtggcgcagtgcaccaacttccggtcgcggctctacggcgagtccaacatcaacgcgccgttcgcggcgtcgctccgggcgagctgcccgcaggccggcggcgacaccaacctggcgccgctggactccacccccaatgccttcgacaacgccttcttcaccgacctcatcgccggccgcggcctcctccactccgaccaggagctctaccgcggcgacggctctggcaccgacgccctcgtccgcgtctacgccgccaaccccgcccgcttcaacgccgacttcgccgccgccatggtgcgcatgggcgccatcaggccgctcaccggcacgcagggcgagatcaggctcaactgctccagggtcaactga
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| Protein seq | MGYSYSSAAVAVSVLVVALAAAASGQLSTTFYASSCPTALSTIRSAVNAAVAREPRMGASLLRLHFHDCFLGRRDGMTTNQTMANTNLHPPTTDLGAHTVGVAQCTNFRSRLYGESNINAPFAASLRASCPQAGGDTNLAPLDSTPNAFDNAFFTDLIAGRGLLHSDQELYRGDGSGTDALVRVYAANPARFNADFAAAMVRMGAIRPLTGTQGEIRLNCSRVN |
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| Function | Peroxidase 70 [UniProtKB/Swiss-Prot:A5H452] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0016820 | OsLima_03g0016820.01 | Chr03 | 13069193 | 13074134 | + | NAM | ||
| CDS seq | atgggttactcctactcttccgccgccgtggcggtgagcgttttggtggtggcgttggcggcggcggcgtcgggccagctgtcgacgacgttctacgcctcgtcgtgcccgaccgcgctgtcgacgatcaggagcgccgtgaacgcggcggtggccagggagccccgcatgggcgcctccctgctcaggctccacttccacgactgctttctcgggaggagggacgggatgacgacgaaccaaaccatggcgaacaccaacctccatccaccgaccaccgacctgggagcgcacacggtgggcgtggcgcagtgcaccaacttccggtcgcggctctacggcgagtccaacatcaacgcgccgttcgcggcgtcgctccgggcgagctgcccgcaggccggcggcgacaccaacctggcgccgctggactccacccccaatgccttcgacaacgccttcttcaccgacctcatcgccggccgcggcctcctccactccgaccaggagctctaccgcggcgacggctctggcaccgacgccctcgtccgcgtctacgccgccaaccccgcccgcttcaacgccgacttcgccgccgccatggtgcgcatgggcgccatcaggccgctcaccggcacgcagggcgagatcaggctcaactgctccagggtcaactga
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| Protein seq | MGYSYSSAAVAVSVLVVALAAAASGQLSTTFYASSCPTALSTIRSAVNAAVAREPRMGASLLRLHFHDCFLGRRDGMTTNQTMANTNLHPPTTDLGAHTVGVAQCTNFRSRLYGESNINAPFAASLRASCPQAGGDTNLAPLDSTPNAFDNAFFTDLIAGRGLLHSDQELYRGDGSGTDALVRVYAANPARFNADFAAAMVRMGAIRPLTGTQGEIRLNCSRVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0339300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0339300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017100 | RBH | 0.0 | 0.0 | 3.433755 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016950 | RBH | 0.0 | 0.0 | 3.761046 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016950 | RBH | 0.0 | 0.093333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016740 | RBH | 0.0 | 0.0 | 2.572371 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0208500 | RBH | 28.280365 | 0.092184 | 0.03251 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016600 | RBH | 0.0 | 1.263185 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0213200 | RBH | 24.9411315 | 0.011933 | 0.0306315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027330 | RBH | 0.221365 | 0.326599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016900 | RBH | 0.0 | 14.671865 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016780 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016700 | RBH | 0.0 | 3.722359 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016650 | RBH | 0.0 | 0.0 | 1.621935 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016630 | RBH | 0.0 | 0.000000 | 0.000000 |
