Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0011190 | OGI:06026330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:9567973-9569823 | ||||||||
| Gene Symbol | RLP1, OsRLP1, SEPK1 | ||||||||||
| DNA seq | atggaggcgcctttcttcttcttcctcctcctcctcctcctagtctcttcctccccttccaccgcccgcctctcctcctacggcgtcaacaccgaaggccagttggcgattgtctctgctccaattcttgcatttggtttggtatgagcgttgcctgtgctgaattagtgattagtggtgatgaattggtggtgatttgcagtgcaagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgacccctgcagctgggccttgatcacctgctccccggactccctcgtcactaccctgtaattaagcaccgattaatcaaatcaaagcgagcaatacatagttacatatattgttgacgccgaatcgcgccaccacaccttgaacacgttatgtgcaacccgcatcctacctctcatctgctgcttgtctgaatactctgaatatttttcagggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactgtgtgagtggtgtttcttcctcacatcagtccatggatgtgcattggtactatagccttgacatgaccagtttttgtttgagttgaaactgatttttttctcctttttttgatcttttgatggtgcagtctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccgtggtgaaatccccagctctgtgggccaccttgagagcctccagtacttgtgagtgcagctccacagtgcaaactgcaaactgcaaagcctttgaatgctgcctgctcccctttttagacaattttcaagcactgctgcactgttcataaatgatttggaattatgtaccgaggtggttttttttcccttcgagtggatgctcttctcgtttcttacacatccaaatatttatgtttttcataaaaaagcaaaataaatcatcatgtgatatatcactttaaaacatataagttcgaattcaacccatataaatttaaacgaaaataacaaaccaagctcttaactaatatataattttaattttttctatatttaaatattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatggcatgcacaaaatgagggaatatcatcttaacgggaaattgactttaccatataatatgaacgtatacatagttatagttgtttctttgttgccatgctaagttgggagcctgtctatctattgttctcttgtaactttgatcaggaggctgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctgtgagtaaattcgtcaccagtttcccctgctcttgctttggtttgttgtaattaatcagtttgctttgtctcgctctgcacctggtgattcagagatttgtcatacaacaacctgagtggtccgataccggcatcattggcaagaagatacaagtaagtttgcagtttcaagttcattctttggaacaaaaaaggaaccttttttttctttgattcagtgttgttcaacaattgcatggtttctcttctcttgcagcgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattag
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| CDS seq | atggaggcgcctttcttcttcttcctcctcctcctcctcctagtctcttcctccccttccaccgcccgcctctcctcctacggcgtcaacaccgaaggccagttggcgattgtctctgctccaattcttgcatttgtgcaagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgacccctgcagctgggccttgatcacctgctccccggactccctcgtcactaccctggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactgttctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccgtggtgaaatccccagctctgtgggccaccttgagagcctccagtacttgaggctgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctagatttgtcatacaacaacctgagtggtccgataccggcatcattggcaagaagatacaacgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattag
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| Protein seq | MEAPFFFFLLLLLLVSSSPSTARLSSYGVNTEGQLAIVSAPILAFVQALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETVLLQNNNISGPIPAEIGKLANLKRLDLSSNQFRGEIPSSVGHLESLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH |
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| Function | LRR receptor kinase SERL2 [UniProtKB/Swiss-Prot:Q9FP13] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0011190 | OsLima_06g0011190.01 | Chr06 | 9567973 | 9569823 | + | NAM | ||
| CDS seq | atggaggcgcctttcttcttcttcctcctcctcctcctcctagtctcttcctccccttccaccgcccgcctctcctcctacggcgtcaacaccgaaggccagttggcgattgtctctgctccaattcttgcatttgtgcaagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgacccctgcagctgggccttgatcacctgctccccggactccctcgtcactaccctggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactgttctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccgtggtgaaatccccagctctgtgggccaccttgagagcctccagtacttgaggctgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctagatttgtcatacaacaacctgagtggtccgataccggcatcattggcaagaagatacaacgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattag
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| Protein seq | MEAPFFFFLLLLLLVSSSPSTARLSSYGVNTEGQLAIVSAPILAFVQALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETVLLQNNNISGPIPAEIGKLANLKRLDLSSNQFRGEIPSSVGHLESLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0274300 | RBH | 3.931244 | 1.311950 | 2.740619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g16300 | RBH | 2.710797 | 0.918277 | 0.845780 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0274300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011180 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020840 | SBH | 0.0 | 6.187381 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011080 | RBH | 0.0 | 0.0 | 2.340597 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020660 | SBH | 0.0 | 0.144824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027310 | SBH | 0.099973 | 5.621058 | 0.116741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0153800 | RBH | 4.2167885 | 16.5961525 | 0.05966 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026710 | SBH | 0.026854 | 0.871099 | 0.034093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0151000 | RBH | 3.943083 | 6.1207495 | 0.224874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031940 | SBH | 0.000000 | 0.333659 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020960 | RBH | 0.0 | 10.873197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020580 | SBH | 0.0 | 18.138052 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002740 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027110 | RBH | 0.071356 | 3.468843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020660 | SBH | 0.0 | 2.926954 | 0.115848 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0011190 | SBH | 0.000000 | 5.689448 | 1.144959 |
