Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g16300 | OGI:06026330 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:9289219-9291362 | ||||||||
| Gene Symbol | SEPK1 | ||||||||||
| DNA seq | AGTCCTCTCCTCTTCCACCCAAAGAAAGAGCTCACCTTGATTACCCTTACCCTCCTCCCACTAATCACGCTAATTTGCTAGCTCGACTCCTAGCTACCTTCATCAGCAATGGAGGCGCCTTTCTTCTTCTTCCTCCTCCTCCTAGTCTCCTCCTCCCCTTCCACCGCCCGCCTCTCCGCCTATGGCGTCAACACCGAAGGCCAGTTGGCGATTGTCTCTGCTCCAATTCTTGCATTTGGTTTGGTATGAGCTTTGCCTGTGCTGAATTAGTGATTAGTGGTGGTGAATTGGTGGTGATTTGCAGTGCGAGCTCTGATCGAGATCAAGAACCTGCTCGAGGACCCCCATGGCGTGCTCAAGAGCTGGGATCAGAACTCCGTCGATCCCTGCAGCTGGGCCTTGATCACCTGCTCCCCGGACTCCCTCGTCACTACCCTGTAATTAAGCACCAATTAAGCAAAGCAAAGCAAGCAATACATAGTTACATATTGTTGGCGCCGGCATCCTCTCATCTGCTGCTTGTCTGAATATTATCTGAATATTTTTCAGGGAAGCTCCAGGCCAGCATCTCTCTGGCCTGCTCGCGCCAAGCATCGGCGACCTGACCAATCTTGAGACTATGTGAGTAGTGTTTCTTCCTCACATCAGTCCATGGATGTGCATTGGCACTATAGCCTTGTCATGACCAGTTTTTGTTTGAGTTGAAACTGATTTTTTTTTCCTTTTTTTGATCTTTTGATGGTGCAGTCTCCTGCAGAACAACAACATAAGTGGGCCAATCCCAGCAGAGATTGGCAAGCTGGCAAACCTCAAGAGACTTGATCTCTCCAGCAACCAATTCCATGGTGAAATCCCCTGCTCTGTGGGCCACCTCAAGAGCCTCCAGTACTTGTGAGTGCAGCTCCACAGTGCAAACTGCAAACTGCAAAGCCTTTGAATGCTGCCTGCTCCCCTTTTTAGACAATTTTCAAGCACTGCTGCACTGTTCATAATGATTTGGAATTATGTACCGAGGTGGTTTTTTTTTCCCTCGAGTGGATGCTCTTCTCGTTTCTTCCACATCGAAATATTTATATTTTTTTTATAAAAAAGCAAAATAAATCATCATGTGATATATCACTTTTAAAACATATAAGTTCAAATTCAACACATATAAATTTAAATGAATATAACAAATCAAACGCTTAGCTAATATATAATTTTTTAATTTTTTCAACATTTAGTTCTTATATATATTTATATTTTTAAAACAAGATTCATAACTATTTAAATGGCATGCATGAAACTAGGGATATCATCTTAACAGAGAAATTGACTTTACCATATACTATTTTGTATACATAGTTATAGTTGTTTCTTTGTTGCCATGCTAAGTTGGGAGCCTGTCCATCTATTGCTCTCTTGTAACTTTGATCAGGAGACTGAACAACAACACCCTGTCTGGTCCAATTCCTTCTGCATCAGCTAACCTGTCGCACCTTGTTTTCCTGTGAGTAAATTCGTCACCAGTTTCCCCTGCTGTTGCTTTGGTTTGTTGTAATTAATCAGTTTGCTTTGTCTCGCTCTGCACTTGGTGATTCAGAGATTTGTCTTACAACAACCTGAGTGGTCCGATACCGGCATCATTGGCAAGAAGATACAAGTAAGTTTGCAGTTTCAAGTTCATCCTTTGGAACAAAAAAAAAATGAACTTTTTTATTTTATTCAGTGTTGTTCAACAATTGCATGGTTTCTCTTCTCTTGCAGCGTAGTGGGGAATCCCCTCATCTGCGAGCAAGATTGCTACAGGATGGCGCCGATGGCGATGTTCCATTAGATCAAGAAGATTTTACTGTTCCGTCTGTTCTTCAAATGCTGCTTACTGAAAGAGCAAATGGAGAACGCCGTCTCTAAATAATTACTACCTCTATCCTTTAATATTTGACGTTGGTTAGCTCAATTTCGAACTAAGCAACGTCAAACATTAAAAAACATAAAAAAAATGTGGGACTACTTACTATTTGATGTTGCTTTTATTAGTTTGATGTAAGCTCCTAGAGTGAGCTTACTTTGAAATGTACTATTATGTAACACTACTCAATAAAGAGTCTTTCTGGACTAATGATTGCCTGTACCTTGGATTATATAATTAGCACCTCCTGTAC
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| CDS seq | ATGGAGGCGCCTTTCTTCTTCTTCCTCCTCCTCCTAGTCTCCTCCTCCCCTTCCACCGCCCGCCTCTCCGCCTATGGCGTCAACACCGAAGTGCGAGCTCTGATCGAGATCAAGAACCTGCTCGAGGACCCCCATGGCGTGCTCAAGAGCTGGGATCAGAACTCCGTCGATCCCTGCAGCTGGGCCTTGATCACCTGCTCCCCGGACTCCCTCGTCACTACCCTGGAAGCTCCAGGCCAGCATCTCTCTGGCCTGCTCGCGCCAAGCATCGGCGACCTGACCAATCTTGAGACTATTCTCCTGCAGAACAACAACATAAGTGGGCCAATCCCAGCAGAGATTGGCAAGCTGGCAAACCTCAAGAGACTTGATCTCTCCAGCAACCAATTCCATGGTGAAATCCCCTGCTCTGTGGGCCACCTCAAGAGCCTCCAGTACTTGAGACTGAACAACAACACCCTGTCTGGTCCAATTCCTTCTGCATCAGCTAACCTGTCGCACCTTGTTTTCCTAGATTTGTCTTACAACAACCTGAGTGGTCCGATACCGGCATCATTGGCAAGAAGATACAACGTAGTGGGGAATCCCCTCATCTGCGAGCAAGATTGCTACAGGATGGCGCCGATGGCGATGTTCCATTAG
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| Protein seq | MEAPFFFFLLLLVSSSPSTARLSAYGVNTEVRALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLDLSSNQFHGEIPCSVGHLKSLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH |
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| Function | LRR receptor kinase SERL2 [UniProtKB/Swiss-Prot:Q9FP13] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g16300 | LOC_Os06g16300.1 | Chr06 | 9289219 | 9291362 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCGCCTTTCTTCTTCTTCCTCCTCCTCCTAGTCTCCTCCTCCCCTTCCACCGCCCGCCTCTCCGCCTATGGCGTCAACACCGAAGTGCGAGCTCTGATCGAGATCAAGAACCTGCTCGAGGACCCCCATGGCGTGCTCAAGAGCTGGGATCAGAACTCCGTCGATCCCTGCAGCTGGGCCTTGATCACCTGCTCCCCGGACTCCCTCGTCACTACCCTGGAAGCTCCAGGCCAGCATCTCTCTGGCCTGCTCGCGCCAAGCATCGGCGACCTGACCAATCTTGAGACTATTCTCCTGCAGAACAACAACATAAGTGGGCCAATCCCAGCAGAGATTGGCAAGCTGGCAAACCTCAAGAGACTTGATCTCTCCAGCAACCAATTCCATGGTGAAATCCCCTGCTCTGTGGGCCACCTCAAGAGCCTCCAGTACTTGAGACTGAACAACAACACCCTGTCTGGTCCAATTCCTTCTGCATCAGCTAACCTGTCGCACCTTGTTTTCCTAGATTTGTCTTACAACAACCTGAGTGGTCCGATACCGGCATCATTGGCAAGAAGATACAACGTAGTGGGGAATCCCCTCATCTGCGAGCAAGATTGCTACAGGATGGCGCCGATGGCGATGTTCCATTAG
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| Protein seq | MEAPFFFFLLLLVSSSPSTARLSAYGVNTEVRALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLDLSSNQFHGEIPCSVGHLKSLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g16300 | LOC_Os06g16300.3 | Chr06 | 9289219 | 9290219 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCGCCTTTCTTCTTCTTCCTCCTCCTCCTAGTCTCCTCCTCCCCTTCCACCGCCCGCCTCTCCGCCTATGGCGTCAACACCGAAGTGCGAGCTCTGATCGAGATCAAGAACCTGCTCGAGGACCCCCATGGCGTGCTCAAGAGCTGGGATCAGAACTCCGTCGATCCCTGCAGCTGGGCCTTGATCACCTGCTCCCCGGACTCCCTCGTCACTACCCTGGAAGCTCCAGGCCAGCATCTCTCTGGCCTGCTCGCGCCAAGCATCGGCGACCTGACCAATCTTGAGACTATTCTCCTGCAGAACAACAACATAAGTGGGCCAATCCCAGCAGAGATTGGCAAGCTGGCAAACCTCAAGAGACTTGATCTCTCCAGCAACCAATTCCATGGTGAAATCCCCTGCTCTGTGGGCCACCTCAAGAGCCTCCAGTACTTGTGA
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| Protein seq | MEAPFFFFLLLLVSSSPSTARLSAYGVNTEVRALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLDLSSNQFHGEIPCSVGHLKSLQYL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.710797 | 0.918277 | 0.845780 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0274300 | RBH | 3.931244 | 1.311950 | 2.740619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49600 | RBH | 0.155260 | 0.060706 | 0.299604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0274300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011180 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011090 | RBH | 0.0 | 0.0 | 1.222288 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011080 | RBH | 0.0 | 0.0 | 2.340597 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011210 | RBH | 12.575239 | 30.748129 | 6.738047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0153800 | RBH | 4.2167885 | 16.5961525 | 0.05966 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010780 | RBH | 0.0 | 0.000000 | 0.232642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0151000 | RBH | 3.943083 | 6.1207495 | 0.224874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011190 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011040 | RBH | 2.607627 | 24.942671 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011070 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002740 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010980 | RBH | 0.445477 | 9.713138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G010880 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0011190 | RBH | 0.000000 | 5.689448 | 1.144959 |
