Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_06g0011210 | OGI:06026330 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr06:9189293-9191336 | ||||||||
| Gene Symbol | SEPK1, - | ||||||||||
| DNA seq | tcccactaatcacgctaatttgctagctcgactcctagctaccttcatcagcaatggaggcgcctttcttcttcttcctcctcctcctagtctcctcctccccttccaccgcccgcctctccgcctatggcgtcaacaccgaaggccagttggcgattgtctctgctccaattcttgcatttggtttggtatgagctttgcctgtgctgAattagtgattagtggtggtgaattggtggtgatttgcagtgcgagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgatccctgcagctgggccttgatcacctgctCcccggactccctcgtcactaccctgtaattaagcaccaattaagcaaagcaaagcaagcaatacatagttacatattgttggcgccggcatcctctcatctgctgcttgtctgaatattatctgaatatttttcagggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactatgtgagtagtgtttcttcctcacatcagtccatggatgtgcattggcactatagccttgtcatgaccagtttttgtttgagttgaaactgatttttttttcctttttttgatcttttgatggtgcagtctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccatggtgaaatcccctgctctgtgggccacctcaagagcctccagtacttgtgagtgcagctccacagtgcaaactgcaaactgcaaagcctttgaatgctgcctgctccccTttttagacaattttcaagcactgctgcactgttcataatgatttggaattatgtaccgaggtggTttttttttccctcgagtggatgctcttctcgtttcttccacatcgaaatatttatattttttttataaaaaagcaaaataaatcatcatgtgatatatcacttttaaaacatataagttcaaattcaacacatataaatttaaatgaatataacaaatcaaacgcttagctaatatataattttttaattttttcaacatttagttcttatatatatttatatttttaaaacaagattcataactatttaaatggcatgcatgaaactagggatatcatcttaacagagaaattgactttaccatatactattttgtatacatagttatagttgtttctttgttgccatgctaagttgggagcctgtccatctattgctctcttgtaactttgatcaggagactgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctgtgagtaaattcgtcaccagtttcccctgctgttgctttggtttgttgtaattaatcagtttgctttgtctcgctctgcacttggtgattcagagatttgtcttacaacaacctgagtggtccgataccggcatcattggcaagaagatacaagtaagtttgcagtttcaagttcatcctttggaacAaaaaaaaaatgaacttttttattttattcagtgttgttcaacaattgcatggtttctcttctcttgcagcgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattagatcaagaagattttactgttccgtctgttcttcaaatgctgcttactgaaagagcaaatggagaacgccgtctctaaataattactacctctatcctttaatatttgacgttggttagctcaatttcgaactaagcaacgtcaaacattaaaaaaCATaaaaaaaatgtgggactacttactatttgatgttgcttttattagtttgatgtaagctcctagagtgagcttactttgaaatgtactattatgtaacactactcaataaagagtctttctggact
More
|
||||||||||
| CDS seq | atggaggcgcctttcttcttcttcctcctcctcctagtctcctcctccccttccaccgcccgcctctccgcctatggcgtcaacaccgaagtgcgagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgatccctgcagctgggccttgatcacctgctCcccggactccctcgtcactaccctggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactattctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccatggtgaaatcccctgctctgtgggccacctcaagagcctccagtacttgagactgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctagatttgtcttacaacaacctgagtggtccgataccggcatcattggcaagaagatacaacgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattag
More
|
||||||||||
| Protein seq | MEAPFFFFLLLLVSSSPSTARLSAYGVNTEVRALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLDLSSNQFHGEIPCSVGHLKSLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH |
||||||||||
| Function | LRR receptor kinase SERL2 [UniProtKB/Swiss-Prot:Q9FP13] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_06g0011210 | OsPr106_06g0011210.01 | Chr06 | 9189293 | 9191336 | + | NAM | ||
| CDS seq | atggaggcgcctttcttcttcttcctcctcctcctagtctcctcctccccttccaccgcccgcctctccgcctatggcgtcaacaccgaagtgcgagctctgatcgagatcaagaacctgctcgaggacccccatggcgtgctcaagagctgggatcagaactccgtcgatccctgcagctgggccttgatcacctgctCcccggactccctcgtcactaccctggaagctccaggccagcatctctctggcctgctcgcgccaagcatcggcgacctgaccaatcttgagactattctcctgcagaacaacaacataagtgggccaatcccagcagagattggcaagctggcaaacctcaagagacttgatctctccagcaaccaattccatggtgaaatcccctgctctgtgggccacctcaagagcctccagtacttgagactgaacaacaacaccctgtctggtccaattccttctgcatcagctaacctgtcgcaccttgttttcctagatttgtcttacaacaacctgagtggtccgataccggcatcattggcaagaagatacaacgtagtggggaatcccctcatctgcgagcaagattgctacaggatggcgccgatggcgatgttccattag
More
|
|||||||
| Protein seq | MEAPFFFFLLLLVSSSPSTARLSAYGVNTEVRALIEIKNLLEDPHGVLKSWDQNSVDPCSWALITCSPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLDLSSNQFHGEIPCSVGHLKSLQYLRLNNNTLSGPIPSASANLSHLVFLDLSYNNLSGPIPASLARRYNVVGNPLICEQDCYRMAPMAMFH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.575239 | 30.748129 | 6.738047 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0274300 | RBH | 3.931244 | 1.311950 | 2.740619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g16300 | RBH | 2.710797 | 0.918277 | 0.845780 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0274300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011180 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020840 | RBH | 0.0 | 6.187381 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011080 | RBH | 0.0 | 0.0 | 2.340597 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020660 | RBH | 0.0 | 0.144824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031850 | SBH | 0.408363 | 14.696503 | 15.548675 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0153800 | RBH | 4.2167885 | 16.5961525 | 0.05966 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020540 | RBH | 0.0 | 0.125206 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0151000 | RBH | 3.943083 | 6.1207495 | 0.224874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020940 | RBH | 0.0 | 0.595795 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020960 | SBH | 0.0 | 10.873197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020580 | SBH | 0.0 | 18.138052 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002740 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010980 | RBH | 0.445477 | 9.713138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020660 | RBH | 0.0 | 2.926954 | 0.115848 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020920 | RBH | 0.0 | 2.400903 | 0.422222 |
