Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0031940 | OGI:02085780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:32230790-32234191 | ||||||||
| Gene Symbol | OsSERL3 | ||||||||||
| DNA seq | ggctatttttccattgtacagtggtgtctcttgctgtacagatcctgctgcaaacaactaatgatggtttgccttccactatttgttatcgtgtcatctcggcccagagagctcgactgcctggaccagcaatgacgagtcatccgtcaggtcagagtagcagcgaccgaaggtgaactcaggcactttgaacttgtgtgagtcagcgcgctgggatgcttcccaccgctctgccagtccatctccctccagcatcctgaccacctctgacatcctgggcctgtgaccagggagatattgggtgcacagcagtgccacctgcaccatctcctccagctcgacacggtcgtagttgcttctcaggcccttgtcgacaagcacgtcgagcttcttctcctggtgcatcttcttcacctgaacacaagccaatgtcaaggcaagagacaagatttggtagacagatatgctagccttattctagcgataattttcccatgctccaaactctttggaaatggtaatgaacttacccagtccagcatggctcccttctgatttgatgacttcccaaattcaagtgcagtttgaccagtgatcaattcaagcagcagaattccaaaaccaaagacgtcggtcttctcagatgactggccggtggagaggtattccggggcaatgtgcccaacggtacccctgacagctgtggtgacatgtgagtcacgatgatctaggagcttggcaagcccaaaatctccaacaatggcttcacagtagtcatcaagcaatatgttggctgcctttacgtccctatgaataatcttggggtcacactgctcgtgcaggtacagtaggcctcttgctgcaccgagtgcaatcctctgtctggtgatccagtccaatggtggcttccctataattagtcacgtgagaacaaaattggttatatgggaatcatattattttttaaaaaagttttggccaatgaaaacgatatagaaatgaaaggattaaataagaagctctcttgtcaagaactgaggaacaattcattactatttcatttagctattttatgatggaattactgtttgatttataattttggaattcatgaaccatcttgaaatcatgatgttcttacctttcagacgcaatgcgacactcccatttgacatgtatggatataccagaagcctctcagtagcagtcatgcagaacccataaagcctgaggaggttccggtgaagcgccaagctgatcatctcaacttcagtctgaaactgtgcctgcccgcctgcagcattaccatctttcagcctcttgacagctacaacagttccatctggtagctttccccggtaaacgtttccaaagccgccttttcctaagatgttcttattgctgaagttctctgttgcaacctgaagctctctgaactgaaacctcttcacatttcctaggttgacattctctgtgtgttgctctgcaatagccaatgcgttacaatgaaaacaaccatcgcatgccagtatgcccccaagtttgacgagcattgaggcattatggatagtagtttggctttttgcttaccatcaacatcaaaaagaatttgctggtttcgcctatgcctccaccagaacagcaatcccataacagggataaggaagctgatgcagccaattgtagaaccaaatgcaattgcaaccttgtggcttttagattttgctggcatcagagtacctattgatagaaggccattagagcaattgctatctacatggccaatgcaaatttcaatttgcaaggtgatttatgcataccctgtgtattattcaggctgtaggacatcggcattggtaaagttccataacaatcatgttccgtacccgcagcacagatcaacggattccccactatactgcaacagataagcaaaaTtttgaggcaaattttgttttccttggaggtagtttacaacaaatttaacctgtagctgttttttgaggggttagactgcatacttacttgaacgttcttgccaaagaaccaggtactggaccactcagattattatacgaaaggtccctgaaaaatgcaagtccacaataagaaccggcacagcgcacatacaacataggacagatatcaccaaacagaaaaacaagcaaaggatactcacaggaaaacaagctgtgataaattagctgatgatgaagggtatgcaccagacagggtgttgttgttgagcctcctggtagcagcaaaatggaaaagaataagaagagttacaccaattgtgacttctgagaggacaagttacaaatggggaatctcattcaaggttaccagaacagaacagaactgcactgcacttacaagtactggaggctttcgaggtggcctactgagtttgggattccaccagagaagtggttactggagagatcaagtgttttgagttttgttagcctgccaatctcttctggaattggaccattgatgttgttgttctgcagaagactacaaacaagacagattaggatctcttcccactcaagaaacataatggaagcagaatctacagcgatgatcgcaaaggctaatcacgacaggtaaaacttacactatctcaagattggtcaagttgcctatgcttgcggagagcaggccagaaagattctggcttggagcctccctatcaaattcagacaagccaacaaataatggtaggtcagcaaatcaaaggaaacttgtcaagatatgttggggttgagtaaaaatatgatactctagatggcttgcttacaggccagtgacaaggttctcaggtgagcaagtgaccatggtccagctgcaaggatccacggagtcttggtcccagttcttgagcacaccgtgaggatccttgagggaagtcttgatcatcatgagagcttgcactggagatgagattatgacacgcacaagcacaaatcagtgctagagaaacaactaaagaagaaccacgggagagttcttcatatgggagtacaaaacaaggtagcaagcaccaatgcagccaaaaaacaaacgaaaaccaaaaaaagagttcttgatttgaggaaggaatattaaccttcatagtttacacccttgggagagaggagggcacttgcaagcctgcaagggaaggagaaggaggcaagcaacaccagtgagtaaaccgcaagagccacctccattgccatggaagggcggaagcaggagaggaagggctaatcgcttgtggtggtgtgttcaaacatggaggaagggtgaggccaaggaaaagaagcatgcagccttctcttctcacaattgccagaggcctctgagccgctgtcagtagcaaatgacacaaaagaagatgcttgtgttctggcc
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| CDS seq | atggcaatggaggtggctcttgcggtttactcactggtgttgcttgcctccttctccttcccttgcaggcttgcaagtgccctcctctctcccaagggtgtaaactatgaagtgcaagctctcatgatgatcaagacttccctcaaggatcctcacggtgtgctcaagaactgggaccaagactccgtggatccttgcagctggaccatggtcacttgctcacctgagaaccttgtcactggcctggaggctccaagccagaatctttctggcctgctctccgcaagcataggcaacttgaccaatcttgagatagttcttctgcagaacaacaacatcaatggtccaattccagaagagattggcaggctaacaaaactcaaaacacttgatctctccagtaaccacttctctggtggaatcccaaactcagtaggccacctcgaaagcctccagtacttgaggctcaacaacaacaccctgtctggtgcatacccttcatcatcagctaatttatcacagcttgttttcctggacctttcgtataataatctgagtggtccagtacctggttctttggcaagaacgttcaatatagtggggaatccgttgatctgtgctgcgggtacggaacatgattgttatggaactttaccaatgccgatgtcctacagcctgaataatacacagggtactctgatgccagcaaaatctaaaagccacaaggttgcaattgcatttggttctacaattggctgcatcagcttccttatccctgttatgggattgctgttctggtggaggcataggcgaaaccagcaaattctttttgatgttgatgagcaacacacagagaatgtcaacctaggaaatgtgaagaggtttcagttcagagagcttcaggttgcaacagagaacttcagcaataagaacatcttaggaaaaggcggctttggaaacgtttaccggggaaagctaccagatggaactgttgtagctgtcaagaggctgaaagatggtaatgctgcaggcgggcaggcacagtttcagactgaagttgagatgatcagcttggcgcttcaccggaacctcctcaggctttatgggttctgcatgactgctactgagaggcttctggtatatccatacatgtcaaatgggagtgtcgcattgcgtctgaaaggtaagaacatcatgatttcaagatggttcatgaattccaaaattataaatcaaacatcatctgagaagaccgacgtctttggttttggaattctgctgcttgaattgatcactggtcaaactgcacttgaatttgggaagtcatcaaatcagaagggagccatgctggactgggtgaagaagatgcaccaggagaagaagctcgacgtgcttgtcgacaagggcctgagaagcaactacgaccgtgtcgagctggaggagatggtgcaggtggcactgctgtgcacccaatatctccctggtcacaggcccaggatgtcagaggtggtcaggatgctggagggagatggactggcagagcggtgggaagcatcccagcgcgctgactcacacaagttcaaagtgcctgagttcaccttcggtcgctgctactctgacctgacggatgactcgtcattgctggtccaggcagtcgagctctctgggccgagatga
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| Protein seq | MAMEVALAVYSLVLLASFSFPCRLASALLSPKGVNYEVQALMMIKTSLKDPHGVLKNWDQDSVDPCSWTMVTCSPENLVTGLEAPSQNLSGLLSASIGNLTNLEIVLLQNNNINGPIPEEIGRLTKLKTLDLSSNHFSGGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPMSYSLNNTQGTLMPAKSKSHKVAIAFGSTIGCISFLIPVMGLLFWWRHRRNQQILFDVDEQHTENVNLGNVKRFQFRELQVATENFSNKNILGKGGFGNVYRGKLPDGTVVAVKRLKDGNAAGGQAQFQTEVEMISLALHRNLLRLYGFCMTATERLLVYPYMSNGSVALRLKGKNIMISRWFMNSKIINQTSSEKTDVFGFGILLLELITGQTALEFGKSSNQKGAMLDWVKKMHQEKKLDVLVDKGLRSNYDRVELEEMVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAERWEASQRADSHKFKVPEFTFGRCYSDLTDDSSLLVQAVELSGPR |
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| Function | Protein NSP-INTERACTING KINASE 2 [UniProtKB/Swiss-Prot:Q8RY65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0031940 | OsLima_02g0031940.02 | Chr02 | 32230883 | 32233900 | - | NAM | ||
| CDS seq | atgatgatcaagacttccctcaaggatcctcacggtgtgctcaagaactgggaccaagactccgtggatccttgcagctggaccatggtcacttgctcacctgagaaccttgtcactggcctggaggctccaagccagaatctttctggcctgctctccgcaagcataggcaacttgaccaatcttgagatagttcttctgcagaacaacaacatcaatggtccaattccagaagagattggcaggctaacaaaactcaaaacacttgatctctccagtaaccacttctctggtggaatcccaaactcagtaggccacctcgaaagcctccagtacttgaggctcaacaacaacaccctgtctggtgcatacccttcatcatcagctaatttatcacagcttgttttcctggacctttcgtataataatctgagtggtccagtacctggttctttggcaagaacgttcaatatagtggggaatccgttgatctgtgctgcgggtacggaacatgattgttatggaactttaccaatgccgatgtcctacagcctgaataatacacagggtactctgatgccagcaaaatctaaaagccacaaggttgcaattgcatttggttctacaattggctgcatcagcttccttatccctgttatgggattgctgttctggtggaggcataggcgaaaccagcaaattctttttgatgttgatgagcaacacacagagaatgtcaacctaggaaatgtgaagaggtttcagttcagagagcttcaggttgcaacagagaacttcagcaataagaacatcttaggaaaaggcggctttggaaacgtttaccggggaaagctaccagatggaactgttgtagctgtcaagaggctgaaagatggtaatgctgcaggcgggcaggcacagtttcagactgaagttgagatgatcagcttggcgcttcaccggaacctcctcaggctttatgggttctgcatgactgctactgagaggcttctggtatatccatacatgtcaaatgggagtgtcgcattgcgtctgaaaggtaagaacatcatgatttcaagatggttcatgaattccaaaattataaatcaaacatcatctgagaagaccgacgtctttggttttggaattctgctgcttgaattgatcactggtcaaactgcacttgaatttgggaagtcatcaaatcagaagggagccatgctggactgggtgaagaagatgcaccaggagaagaagctcgacgtgcttgtcgacaagggcctgagaagcaactacgaccgtgtcgagctggaggagatggtgcaggtggcactgctgtgcacccaatatctccctggtcacaggcccaggatgtcagaggtggtcaggatgctggagggagatggactggcagagcggtgggaagcatcccagcgcgctgactcacacaagttcaaagtgcctgagttcaccttcggtcgctgctactctgacctgacggatgactcgtcattgctggtccaggcagtcgagctctctgggccgagatga
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| Protein seq | MMIKTSLKDPHGVLKNWDQDSVDPCSWTMVTCSPENLVTGLEAPSQNLSGLLSASIGNLTNLEIVLLQNNNINGPIPEEIGRLTKLKTLDLSSNHFSGGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPMSYSLNNTQGTLMPAKSKSHKVAIAFGSTIGCISFLIPVMGLLFWWRHRRNQQILFDVDEQHTENVNLGNVKRFQFRELQVATENFSNKNILGKGGFGNVYRGKLPDGTVVAVKRLKDGNAAGGQAQFQTEVEMISLALHRNLLRLYGFCMTATERLLVYPYMSNGSVALRLKGKNIMISRWFMNSKIINQTSSEKTDVFGFGILLLELITGQTALEFGKSSNQKGAMLDWVKKMHQEKKLDVLVDKGLRSNYDRVELEEMVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAERWEASQRADSHKFKVPEFTFGRCYSDLTDDSSLLVQAVELSGPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0031940 | OsLima_02g0031940.01 | Chr02 | 32230883 | 32234191 | - | NAM | ||
| CDS seq | atggcaatggaggtggctcttgcggtttactcactggtgttgcttgcctccttctccttcccttgcaggcttgcaagtgccctcctctctcccaagggtgtaaactatgaagtgcaagctctcatgatgatcaagacttccctcaaggatcctcacggtgtgctcaagaactgggaccaagactccgtggatccttgcagctggaccatggtcacttgctcacctgagaaccttgtcactggcctggaggctccaagccagaatctttctggcctgctctccgcaagcataggcaacttgaccaatcttgagatagttcttctgcagaacaacaacatcaatggtccaattccagaagagattggcaggctaacaaaactcaaaacacttgatctctccagtaaccacttctctggtggaatcccaaactcagtaggccacctcgaaagcctccagtacttgaggctcaacaacaacaccctgtctggtgcatacccttcatcatcagctaatttatcacagcttgttttcctggacctttcgtataataatctgagtggtccagtacctggttctttggcaagaacgttcaatatagtggggaatccgttgatctgtgctgcgggtacggaacatgattgttatggaactttaccaatgccgatgtcctacagcctgaataatacacagggtactctgatgccagcaaaatctaaaagccacaaggttgcaattgcatttggttctacaattggctgcatcagcttccttatccctgttatgggattgctgttctggtggaggcataggcgaaaccagcaaattctttttgatgttgatgagcaacacacagagaatgtcaacctaggaaatgtgaagaggtttcagttcagagagcttcaggttgcaacagagaacttcagcaataagaacatcttaggaaaaggcggctttggaaacgtttaccggggaaagctaccagatggaactgttgtagctgtcaagaggctgaaagatggtaatgctgcaggcgggcaggcacagtttcagactgaagttgagatgatcagcttggcgcttcaccggaacctcctcaggctttatgggttctgcatgactgctactgagaggcttctggtatatccatacatgtcaaatgggagtgtcgcattgcgtctgaaaggtaagaacatcatgatttcaagatggttcatgaattccaaaattataaatcaaacatcatctgagaagaccgacgtctttggttttggaattctgctgcttgaattgatcactggtcaaactgcacttgaatttgggaagtcatcaaatcagaagggagccatgctggactgggtgaagaagatgcaccaggagaagaagctcgacgtgcttgtcgacaagggcctgagaagcaactacgaccgtgtcgagctggaggagatggtgcaggtggcactgctgtgcacccaatatctccctggtcacaggcccaggatgtcagaggtggtcaggatgctggagggagatggactggcagagcggtgggaagcatcccagcgcgctgactcacacaagttcaaagtgcctgagttcaccttcggtcgctgctactctgacctgacggatgactcgtcattgctggtccaggcagtcgagctctctgggccgagatga
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| Protein seq | MAMEVALAVYSLVLLASFSFPCRLASALLSPKGVNYEVQALMMIKTSLKDPHGVLKNWDQDSVDPCSWTMVTCSPENLVTGLEAPSQNLSGLLSASIGNLTNLEIVLLQNNNINGPIPEEIGRLTKLKTLDLSSNHFSGGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPVPGSLARTFNIVGNPLICAAGTEHDCYGTLPMPMSYSLNNTQGTLMPAKSKSHKVAIAFGSTIGCISFLIPVMGLLFWWRHRRNQQILFDVDEQHTENVNLGNVKRFQFRELQVATENFSNKNILGKGGFGNVYRGKLPDGTVVAVKRLKDGNAAGGQAQFQTEVEMISLALHRNLLRLYGFCMTATERLLVYPYMSNGSVALRLKGKNIMISRWFMNSKIINQTSSEKTDVFGFGILLLELITGQTALEFGKSSNQKGAMLDWVKKMHQEKKLDVLVDKGLRSNYDRVELEEMVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAERWEASQRADSHKFKVPEFTFGRCYSDLTDDSSLLVQAVELSGPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0031940 | OsLima_02g0031940.03 | Chr02 | 32230790 | 32231007 | - | IsoSeq | ||
| CDS seq | catcccagcgcgctgactcacacaagttcaaagtgcctgagttcaccttcggtcgctgctactctg |
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| Protein seq | HPSALTHTSSKCLSSPSVAATL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.333659 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0728500 | SBH | 0.241609 | 0.066578 | 1.612698 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49600 | RBH | 0.155260 | 0.060706 | 0.299604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0728500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032180 | RBH | 0.000000 | 3.723368 | 4.471129 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032290 | RBH | 0.0 | 1.992350 | 2.091331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032160 | RBH | 0.0 | 8.808287 | 9.359575 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031750 | RBH | 0.057557 | 0.228229 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031850 | RBH | 0.408363 | 14.696503 | 15.548675 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0495300 | RBH | 1.5231245 | 16.9894445 | 4.3244735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031630 | RBH | 0.057630 | 0.623653 | 0.557654 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0524100 | RBH | 1.7523055 | 9.600512 | 26.103846 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011200 | RBH | 0.156665 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031710 | RBH | 0.0 | 3.240304 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032070 | RBH | 0.000000 | 38.236526 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031920 | RBH | 0.0 | 0.859417 | 1.389385 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031540 | RBH | 0.000000 | 3.062429 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032200 | RBH | 0.0 | 2.208243 | 3.326127 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031960 | RBH | 0.0 | 11.442695 | 3.749363 |
