Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013860 | OGI:04066380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22940034-22944407 | ||||||||
| Gene Symbol | APX7, OsAPx7, OsAPx07, OSAPX7, APx7, sAPX | ||||||||||
| DNA seq | aaagcataataagtaaagaatagtattaaaatgtttttctttttggtttctcgtcgaatttggtccgcaagttcggctcaaatttgcctctctagccagtctgtttttttattcgaatactcagtttccaaatccaatatgactcgtggtcaggaaaagcttcatctggaatgatgacacaacgttggagcaggaaattggattgtgtagtgtttctctcttgatcctacgagcaagataaatagcagattggaatcattttagccaagaaccgagcgaaccttctgttgaatcacagtatcgagtaagtagaacagctgacatgaacctacaaattgggaggtggatggggtagtagagtatatagacctttctgtaaaagtggttggccacttcagcgatctggctcatgcgcatcgcattaaccgtccaacgtgaatccctgcaggacaaccaaacagtcacatactctcagtttgccacaacagaaggaccacggactaggattgggcgctagtcatcgggggtaaaaacaacttggcagtggtttgtcggataaactatctctactaactgtggcccagtcggtcaagagtggcgtgttgtggaaaggaaaactaaggacaagatgttatcactcacctcaggaggattgaattttgcacccagattgctcagtttagcatgagctccggcatagtctttaaagaatgcttcttggtcctctgcgtatttttctgcatagacctgaatgtgcggtgaattctcagacagttagttcaataattatttcaattttcaaatgatcctgacatatcctagtacgagattggtttatttcgggaagtgagagtacagtttaagcattattcaccttgaatgttgggtcctcaaataatgcagcatctgtaggcaagaccaggagatcctgatctcttttctcttttatctcctgcagtattgccaccaggcaccagctcacatcatgcaaaatcatatgaatcatccgacatgaagaataagggaaaagtggcacgtaccttgaaataactgttatcaaacttaagccattcagctgtccacgattgcccaccaggtgcaccagggccattcttctgaaaaagtaagaaaaaaaaggtgaaaaagctcaagatttgtccaatccagtctaaccataaagacaaatgcacttggagttgatgttgcttcatggagttgcagaggcggcacgatattttgcagagaatatatagagattatgtgagcaaaaagtacatccttcagccaaaaccatcggagcagaggccaaggaaaaatatctaaaacgtatggagttctgatttactctagtctgtagctatgtacacatcttgaaattaatacacgtagtttctttcctgaggaataagggtaatttaagcagagacattaagtactgaaagcataaaacatcatgaagtactaagtggtccttgactccttgttgcaaaaatgatgacatgatatgcaatgatagacttaacatgggaatacattgaaacagtggatagaactgagatcatgctcaaaactcggttctcacataagaaaataaagataagaagaacatacagtatatttcgtttctggtttcccccagccactccgttcaggtctggaccttccaagtgtatgtgctccagacagcacaacaatctcctgtaggcacagcatcgcggggcacatgcaactcaacatcacataaaacaaagcaaatgggaaaacatctggttaactagaatctcatttgcacaccttgtcatcaagacccatcctgtaaaataccttcctcaagtgatccgcaggtgcacttgggccagcatctgagcaaccaaaagggaaggataactgaaagttagcaagcatcagttttaagggattgagtatgatgctggtgcaatatttcctaaatacccctatatgtaagaacagttttatgcctgttagcgtggcaataaaaactatcccataattttccaagggaaaaaataaggtcggttgatatattaagctgatgagagacaatgtacataggaacctttacatttaaaaattaaaaagaacaattatgaagtaagcaagacaggatatcagtacagatgttagtgttttggaaaatccagtgaaacataagttgctaaccgggaagcttcccctcaggtggacactgctcaggacctgtgacatcaatccgtccatatgtcattggaatctttggaccaccagcttcctagtacaagtttgacaaaaatggatcattaaggtagaatatagtgttcgtacattaaaaccagactagttaggtacttcatttttcattattttttgggggcgtgaggggatcagacctcaattgctgtagcacttgccagctggaataaatccgcatatgagatatttgggtatttgtccttgataggttggacaagctttagagcatttaccagcccttcaataattcaatcaggatttttagttgctgaaagtacacttacaagcaacaaggaaacgaaatcgtgaaaaggtaatgttaccagcattggctccatgttttaactcaacatcaaatctcaagcttccattagctccacctcgttgtggccactctttaatattcttgtcatacgtaccggaatcatgccatccaagacgaaccttcatgcaggcaaaggaataacattttaaccaccgtggatatagagaaactggagtagaaagccaattgattgtgcacatgcaagggtttgaatggaactaaacaataggaaatggtgccgtggtctacccccgttgcattgcattcagtatttgcaaattcaaaatgtacgacagtacaagttcagtcaatggtgattatttggataaatggcagccctattaacacctttaacttcagcaagctggcatatcatagccatgaccatatgaaggtaaaatagcatggaaataaccaatgaactggacttatgtcctagtgctatgataatgttgttctgctgtcattaattattcaacgccgcattcatattgcctaattccttagaatttacttgtaccatctgataactaattgaacacagcctaacaatttacacaagcacgacctacgttcctaaatgtaagcatttctggctagaaatacttatatttgagaacggacagagtaactcacatgatacttgatagtctcactgggaaaagctgctgcaagtgttagtatcagttatcaccacaaacaataaatgatgataggatacgtgatgaatgaatttatagtttcaaactttcaatacaactcttaactctcacaagccatttgtgacatgtgcaacctactcgtcagtacagatgagatcagacttaacaattgaactgtcgttacacattggtgatttacgacaatacgctatttctagaggtcaaaatcctatttgagaggcaagctggtcatgaaattacttcctcgtgatgttaaattccagcattgctccagagagcatattcagtgtgttcacagattcatgacatcactgtctccagagagaaaattcagtgtgttcacaaactcataacatcgctgtctccgagctgagtttgttctcatgtgcaatccttggttgcaaaggcgatcggccagatggctcctctgctaccgaatcaaatctcccacatggtgatgctgatatgaaggagaagtttcggagcaaccaaagccgcatcgcgtggtgcgtgtacacgagacgagatcataccaggatggggtggcagtgcgtcgtcttgaggagctccctgatgtcctcgcgagcggccttcagctccgccgcgcccgacgccaccgccgccgacgccgccgacgccgacgccgacgccatgcacatcaccgacctgccgctccccgccgccttcgcctcctgcgatcacacacacacagccagagcacgagtcaacaacaacaaacaaccagggcgtcccaaaccccaacccaaccaccacccaagaccgagccgacacggacctgggggAggagccgagaaggtgcggcgcggagggtggcggaggcgcgcgggagggccaccgggaggagagcggtggtgctggatcgcgccgcggggcggccatgcgaggcggaggaggtggaggagaaggccgacggcgcggcggcgtggagggcggcgagtcgctgggccgccatgggtgacgctggtggtgggttggtgggagggaggggagcgtggcctttggggcggggacgaggcggagtgaggtgaaaaaagtccagtccaccaccacgcccgccgccttgggtttcgagggggtttttcgcggttcgttggt
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| CDS seq | atggcggcccagcgactcgccgccctccacgccgccgcgccgtcggccttctcctccacctcctccgcctcgcatggccgccccgcggcgcgatccagcaccaccgctctcctcccggtggccctcccgcgcgcctccgccaccctccgcgccgcaccttctcggctccTcccccaggaggcgaaggcggcggggagcggcaggtcggtgatgtgcatggcgtcggcgtcggcgtcggcggcgtcggcggcggtggcgtcgggcgcggcggagctgaaggccgctcgcgaggacatcagggagctcctcaagacgacgcactgccaccccatcctggttcgtcttggatggcatgattccggtacgtatgacaagaatattaaagagtggccacaacgaggtggagctaatggaagcttgagatttgatgttgagttaaaacatggagccaatgctggtaacattaccttttcacgatttcgtttccttgttgcttggctggtaaatgctctaaagcttgtccaacctatcaaggacaaatacccaaatatctcatatgcggatttattccagctggcaagtgctacagcaattgaggaagctggtggtccaaagattccaatgacatatggacggattgatgtcacaggtcctgagcagtgtccacctgaggggaagcttcccgatgctggcccaagtgcacctgcggatcacttgaggaaggtattttacaggatgggtcttgatgacaaggagattgttgtgctgtctggagcacatacacttggaaggtccagacctgaacggagtggctgggggaaaccagaaacgaaatatactaagaatggccctggtgcacctggtgggcaatcgtggacagctgaatggcttaagtttgataacagttatttcaaggtctatgcagaaaaatacgcagaggaccaagaagcattctttaaagactatgccggagctcatgctaaactgagcaatctgggtgcaaaattcaatcctcctgagggattcacgttggacggttaa
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| Protein seq | MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGNITFSRFRFLVAWLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG |
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| Function | Probable L-ascorbate peroxidase 7, chloroplastic [UniProtKB/Swiss-Prot:Q7XJ02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013860 | OsLima_04g0013860.02 | Chr04 | 22940034 | 22944264 | - | NAM | ||
| CDS seq | atggcggcccagcgactcgccgccctccacgccgccgcgccgtcggccttctcctccacctcctccgcctcgcatggccgccccgcggcgcgatccagcaccaccgctctcctcccggtggccctcccgcgcgcctccgccaccctccgcgccgcaccttctcggctccTcccccaggaggcgaaggcggcggggagcggcaggtcggtgatgtgcatggcgtcggcgtcggcgtcggcggcgtcggcggcggtggcgtcgggcgcggcggagctgaaggccgctcgcgaggacatcagggagctcctcaagacgacgcactgccaccccatcctggttcgtcttggatggcatgattccggtacgtatgacaagaatattaaagagtggccacaacgaggtggagctaatggaagcttgagatttgatgttgagttaaaacatggagccaatgctggtaacattaccttttcacgatttcgtttccttgttgcttggctggtaaatgctctaaagcttgtccaacctatcaaggacaaatacccaaatatctcatatgcggatttattccagctggcaagtgctacagcaattgaggaagctggtggtccaaagattccaatgacatatggacggattgatgtcacaggtcctgagcagtgtccacctgaggggaagcttcccgatgctggcccaagtgcacctgcggatcacttgaggaaggtattttacaggatgggtcttgatgacaaggagattgttgtgctgtctggagcacatacacttggaaggtccagacctgaacggagtggctgggggaaaccagaaacgaaatatactaagaatggccctggtgcacctggtgggcaatcgtggacagctgaatggcttaagtttgataacagttatttcaaggtctatgcagaaaaatacgcagaggaccaagaagcattctttaaagactatgccggagctcatgctaaactgagcaatctgggtgcaaaattcaatcctcctgagggattcacgttggacggttaa
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| Protein seq | MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGNITFSRFRFLVAWLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013860 | OsLima_04g0013860.01 | Chr04 | 22940034 | 22944264 | - | NAM | ||
| CDS seq | atggcggcccagcgactcgccgccctccacgccgccgcgccgtcggccttctcctccacctcctccgcctcgcatggccgccccgcggcgcgatccagcaccaccgctctcctcccggtggccctcccgcgcgcctccgccaccctccgcgccgcaccttctcggctccTcccccaggaggcgaaggcggcggggagcggcaggtcggtgatgtgcatggcgtcggcgtcggcgtcggcggcgtcggcggcggtggcgtcgggcgcggcggagctgaaggccgctcgcgaggacatcagggagctcctcaagacgacgcactgccaccccatcctggttcgtcttggatggcatgattccggtacgtatgacaagaatattaaagagtggccacaacgaggtggagctaatggaagcttgagatttgatgttgagttaaaacatggagccaatgctggtaacattaccttttcacgatttcgtttccttgttgcttggctggtaaatgctctaaagcttgtccaacctatcaaggacaaatacccaaatatctcatatgcggatttattccagctggcaagtgctacagcaattgaggaagctggtggtccaaagattccaatgacatatggacggattgatgtcacaggtcctgagcagtgtccacctgaggggaagcttcccgatgctggcccaagtgcacctgcggatcacttgaggaaggtattttacaggatgggtcttgatgacaaggagattgttgtgctgtctggagcacatacacttggaaggtccagacctgaacggagtggctgggggaaaccagaaacgaaatatactaagaatggccctggtgcacctggtgggcaatcgtggacagctgaatggcttaagtttgataacagttatttcaaggtctatgcagaaaaatacgcagaggaccaagaagcattctttaaagactatgccggagctcatgctaaactgagcaatctgggtgcaaaattcaatcctcctgagggattcacgttggacggttaa
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| Protein seq | MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGNITFSRFRFLVAWLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013860 | OsLima_04g0013860.03 | Chr04 | 22940034 | 22944407 | - | IsoSeq | ||
| CDS seq | ccaacgaaccgcgaaaaaccccctcgaaacccaaggcggcgggcgtggtggtggactggacttttttcacctcactccgcctcgtccccgccccaaaggccacgctcccctccctcccaccaacccaccaccagcgtcacccatggcggcccagcgactcgccgccctccacgccgccgcgccgtcggccttctcctccacctcctccgcctcgcatggccgccccgcggcgcgatccagcaccaccgctctcctcccggtggccctcccgcgcgcctccgccaccctccgcgccgcaccttctcggctccTcccccaggaggcgaaggcggcggggagcggcaggtcggtgatgtgcatggcgtcggcgtcggcgtcggcggcgtcggcggcggtggcgtcgggcgcggcggagctgaaggccgctcgcgaggacatcagggagctcctcaagacgacgcactgccaccccatcctggttcgtcttggatg
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| Protein seq | PTNREKPPRNPRRRAWWWTGLFSPHSASSPPQRPRSPPSHQPTTSVTHGGPATRRPPRRRAVGLLLHLLRLAWPPRGAIQHHRSPPGGPPARLRHPPRRTFSAPPPGGEGGGERQVGDVHGVGVGVGGVGGGGVGRGGAEGRSRGHQGAPQDDALPPHPGSSWM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 22940034 | 22940475 | - | OsLima_04g0013860.02 | OsLima_04g0013860.03,OsLima_04g0013860.02 | All |
| RI | Chr04 | 22940034 | 22940475 | - | OsLima_04g0013860.02 | OsLima_04g0013860.01,OsLima_04g0013860.02 | All |
| SE | Chr04 | 22940780 | 22941074 | - | OsLima_04g0013860.03 | OsLima_04g0013860.03,OsLima_04g0013860.01,OsLima_04g0013860.02 | All |
| A5 | Chr04 | 22940259 | 22940403 | - | OsLima_04g0013860.01 | OsLima_04g0013860.03,OsLima_04g0013860.01 | All |
| A5 | Chr04 | 22942521 | 22942607 | - | OsLima_04g0013860.01,OsLima_04g0013860.02 | OsLima_04g0013860.03,OsLima_04g0013860.01,OsLima_04g0013860.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.563615 | 1.140854 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0434800 | RBH | 12.365689 | 12.525783 | 9.373164 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35520 | RBH | 7.982266 | 8.062280 | 2.289393 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0434800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013900 | RBH | 0.606701 | 65.698204 | 7.456493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014750 | RBH | 0.0 | 16.258204 | 5.018095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014500 | RBH | 1.283328 | 70.787415 | 15.790768 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014080 | RBH | 0.642818 | 2.122177 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014400 | RBH | 5.420769 | 46.857716 | 31.695826 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0338400 | RBH | 6.6158295 | 43.879654 | 4.1261115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013320 | RBH | 0.391433 | 5.546934 | 1.843387 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0335300 | RBH | 6.7937095 | 20.554908 | 10.2461585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020890 | RBH | 6.192226 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013640 | RBH | 0.641183 | 41.570103 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013610 | RBH | 6.223186 | 50.194233 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014210 | RBH | 1.299097 | 5.981054 | 2.775356 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014430 | RBH | 0.723306 | 35.124077 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013500 | RBH | 0.833229 | 19.986788 | 4.748816 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013510 | RBH | 1.949210 | 74.559555 | 16.583002 |
