Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_04g0434800 OGI:04066380 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr04:21622953-21627328
Gene Symbol APX7, OsAPx7, OsAPx07, OSAPX7, APx7, sAPX
DNA seq

AAAGCATAATAAGTAAAGAATAGTATTAAAATGTTTTTCTTTTTGGTTTCTCGTCGAATTTGGTCCGCAAGTTCGGCTCAAATTTGCCTCTCTAGCCAGTCTGTTTTTTTATTCGAATACTCAGTTTCCAAATCCAATATGACTCGTGGTCAGGAAAAGCTTCATCTGGAATGATGACACAACGTTGGAGCAGGAAATTGGATTGTGTAGTGTTTCTCTCTTGATCCTACGAGCAAGATAAATAGCAGATTGGAATCATTTTAGCCAAGAACCGAGCGAACCTTCTGTTGAATCACAGTATCGAGTAAGTAGAACAGCTGACATGAACCTACAAATTGGGAGGTGGATGGGGTAGTAGAGTATATAGACCTTTCTGTAAAAGTGGTTGGCCACTTCAGCGATCTGGCTCATGCGCATCGCATTAACCGTCCAACGTGAATCCCTGCAGGACAACCAAACAGTCACATACTCTCAGTTTGCCACAACAGAAGGACCACGGACTAGGATTGGGCGCTAGTCATCGGGGGTAAAAACAACTTGGCAGTGGTTTGTCGGATAAACTATCTCTACTAACTGTGGCCCAGTCGGTCAAGAGTGGCGTGTTGTGGAAAGGAAAACTAAGGACAAGATGTTATCACTCACCTCAGGAGGATTGAATTTTGCACCCAGATTGCTCAGTTTAGCATGAGCTCCGGCATAGTCTTTAAAGAATGCTTCTTGGTCCTCTGCGTATTTTTCTGCATAGACCTGAATGTGCGGTGAATTCTCAGACAGTTAGTTCAATAATTATTTCAATTTTCAAATGATCCTGACATATCCTAGTACGAGATTGGTTTATTTCGGGAAGTGAGAGTACAGTTTAAGCATTATTCACCTTGAATGTTGGGTCCTCAAATAATGCAGCATCTGTAGGCAAGACCAGGAGATCCTGATCTCTTTTCTCTTTTATCTCCTGCAGTATTGCCACCAGGCACCAGCTCACATCATGCAAAATCATATGAATCATCCGACATGAAGAATAAGGGAAAAGTGGCACGTACCTTGAAATAACTGTTATCAAACTTAAGCCATTCAGCTGTCCACGATTGCCCACCAGGTGCACCAGGGCCATTCTTCTGAAAAAGTAAGAAAAAAAAGGTGAAAAAGCTCAAGATTTGTCCAATCCAGTCTAACCATAAAGACAAATGCACTTGGAGTTGATGTTGCTTCATGGAGTTGCAGAGGCGGCACGATATTTTGCAGAGAATATATAGAGATTATGTGAGCAAAAAGTACATCCTTCAGCCAAAACCATCGGAGCAGAGGCCAAGGAAAAATATCTAAAACGTATGGAGTTCTGATTTACTCTAGTCTGTAGCTATGTACACATCTTGAAATTAATACACGTAGTTTCTTTCCTGAGGAATAAGGGTAATTTAAGCAGAGACATTAAGTACTGAAAGCATAAAACATCATGAAGTACTAAGTGGTCCTTGACTCCTTGTTGCAAAAATGATGACATGATATGCAATGATAGACTTAACATGGGAATACATTGAAACAGTGGATAGAACTGAGATCATGCTCAAAACTCGGTTCTCACATAAGAAAATAAAGATAAGAAGAACATACAGTATATTTCGTTTCTGGTTTCCCCCAGCCACTCCGTTCAGGTCTGGACCTTCCAAGTGTATGTGCTCCAGACAGCACAACAATCTCCTGTAGGCACAGCATCGCGGGGCACATGCAACTCAACATCACATAAAACAAAGCAAATGGGAAAACATCTGGTTAACTAGAATCTCATTTGCACACCTTGTCATCAAGACCCATCCTGTAAAATACCTTCCTCAAGTGATCCGCAGGTGCACTTGGGCCAGCATCTGAGCAACCAAAAGGGAAGGATAACTGAAAGTTAGCAAGCATCAGTTTTAAGGGATTGAGTATGATGCTGGTGCAATATTTCCTAAATACCCCTATATGTAAGAACAGTTTTATGCCTGTTAGCGTGGCAATAAAAACTATCCCATAATTTTCCAAGGGAAAAAATAAGGTCGGTTGATATATTAAGCTGATGAGAGACAATGTACATAGGAACCTTTACATTTAAAAATTAAAAAGAACAATTATGAAGTAAGCAAGACAGGATATCAGTACAGATGTTAGTGTTTTGGAAAATCCAGTGAAACATAAGTTGCTAACCGGGAAGCTTCCCCTCAGGTGGACACTGCTCAGGACCTGTGACATCAATCCGTCCATATGTCATTGGAATCTTTGGACCACCAGCTTCCTAGTACAAGTTTGACAAAAATGGATCATTAAGGTAGAATATAGTGTTCGTACATTAAAACCAGACTAGTTAGGTACTTCATTTTTCATTATTTTTTGGGGGCGTGAGGGGATCAGACCTCAATTGCTGTAGCACTTGCCAGCTGGAATAAATCCGCATATGAGATATTTGGGTATTTGTCCTTGATAGGTTGGACAAGCTTTAGAGCATTTACCAGCCCTTCAATAATTCAATCAGGATTTTTAGTTGCTGAAAGTACACTTACAAGCAACAAGGAAACGAAATCGTGAAAAGGTAATGTTACCAGCATTGGCTCCATGTTTTAACTCAACATCAAATCTCAAGCTTCCATTAGCTCCACCTCGTTGTGGCCACTCTTTAATATTCTTGTCATACGTACCGGAATCATGCCATCCAAGACGAACCTTCATGCAGGCAAAGGAATAACATTTTAACCACCGTGGATATAGAGAAACTGGAGTAGAAAGCCAATTGATTGTGCACATGCAAGGGTTTGAATGGAACTAAACAATAGGAAATGGTGCCGTGGTCTACCCCCGTTGCATTGCATTCAGTATTTGCAAATTCAAAATGTACGACAGTACAAGTTCAGTCAATGGTGATTATTTGGATAAATGGCAGCCCTATTAACACCTTTAACTTCAGCAAGCTGGCATATCATAGCCATGACCATATGAAGGTAAAATAGCATGGAAATAACCAATGAACTGGACTTATGTCCTAGTGCTATGATAATGTTGTTCTGCTGTCATTAATTATTCAACGCCGCATTCATATTGCCTAATTCCTTAGAATTTACTTGTACCATCTGATAACTAATTGAACACAGCCTAACAATTTACACAAGCACGACCTACGTTCCTAAATGTAAGCATTTCTGGCTAGAAATACTTATATTTGAGAACGGACAGAGTAACTCACATGATACTTGATAGTCTCACTGGGAAAAGCTGCTGCAAGTGTTAGTATCAGTTATCACCACAAACAATAAATGATGATAGGATACGTGATGAATGAATTTATAGTTTCAAACTTTCAATACAACTCTTAACTCTCACAAGCCATTTGTGACATGTGCAACCTACTCGTCAGTACAGATGAGATCAGACTTAACAATTGAACTGTCGTTACACATTGGTGATTTACGACAATACGCTATTTCTAGAGGTCAAAATCCTATTTGAGAGGCAAGCTGGTCATGAAATTACTTCCTCGTGATGTTAAATTCCAGCATTGCTCCAGAGAGCATATTCAGTGTGTTCACAGATTCATGACATCACTGTCTCCAGAGAGAAAATTCAGTGTGTTCACAAACTCATAACATCGCTGTCTCCGAGCTGAGTTTGTTCTCATGTGCAATCCTTGGTTGCAAAGGCGATCGGCCAGATGGCTCCTCTGCTACCGAATCAAATCTCCCACATGGTGATGCTGATATGAAGGAGAAGTTTCGGAGCAACCAAAGCCGCATCGCGTGGTGCGTGTACACGAGACGAGATCATACCAGGATGGGGTGGCAGTGCGTCGTCTTGAGGAGCTCCCTGATGTCCTCGCGAGCGGCCTTCAGCTCCGCCGCGCCCGACGCCACCGCCGCCGACGCCGCCGACGCCGACGCCGACGCCATGCACATCACCGACCTGCCGCTCCCCGCCGCCTTCGCCTCCTGCGATCACACACACACAGCCAGAGCACGAGTCAACAACAACAAACAACCAGGGCGTCCCAAACCCCAACCCAACCACCACCCAAGACCGAGCCGACACGGACCTGGGGGAGGAGCCGAGAAGGTGCGGCGCGGAGGGTGGCGGAGGCGCGCGGGAGGGCCACCGGGAGGAGAGCGGTGGTGCTGGATCGCGCCGCGGGGCGGCCATGCGAGGCGGAGGAGGTGGAGGAGAAGGCCGACGGCGCGGCGGCGTGGAGGGCGGCGAGTCGCTGGGCCGCCATGGGTGACGCTGGTGGTGGGTTGGTGGGAGGGAGGGGAGCGTGGCCTTTGGGGCGGGGACGAGGCGGAGTGAGGTGAAAAAAGTCCAGTCCACCACCACGCCCGCCGCCTTGGGTTTCGAGGGGGTTTTTCGCGGTTCGTTGGTGC

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CDS seq

ATGGCGGCCCAGCGACTCGCCGCCCTCCACGCCGCCGCGCCGTCGGCCTTCTCCTCCACCTCCTCCGCCTCGCATGGCCGCCCCGCGGCGCGATCCAGCACCACCGCTCTCCTCCCGGTGGCCCTCCCGCGCGCCTCCGCCACCCTCCGCGCCGCACCTTCTCGGCTCCTCCCCCAGGAGGCGAAGGCGGCGGGGAGCGGCAGGTCGGTGATGTGCATGGCGTCGGCGTCGGCGTCGGCGGCGTCGGCGGCGGTGGCGTCGGGCGCGGCGGAGCTGAAGGCCGCTCGCGAGGACATCAGGGAGCTCCTCAAGACGACGCACTGCCACCCCATCCTGGTTCGTCTTGGATGGCATGATTCCGGTACGTATGACAAGAATATTAAAGAGTGGCCACAACGAGGTGGAGCTAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGAGGAAGCTGGTGGTCCAAAGATTCCAATGACATATGGACGGATTGATGTCACAGGTCCTGAGCAGTGTCCACCTGAGGGGAAGCTTCCCGATGCTGGCCCAAGTGCACCTGCGGATCACTTGAGGAAGGTATTTTACAGGATGGGTCTTGATGACAAGGAGATTGTTGTGCTGTCTGGAGCACATACACTTGGAAGGTCCAGACCTGAACGGAGTGGCTGGGGGAAACCAGAAACGAAATATACTAAGAATGGCCCTGGTGCACCTGGTGGGCAATCGTGGACAGCTGAATGGCTTAAGTTTGATAACAGTTATTTCAAGGAGATAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTCTATGCAGAAAAATACGCAGAGGACCAAGAAGCATTCTTTAAAGACTATGCCGGAGCTCATGCTAAACTGAGCAATCTGGGTGCAAAATTCAATCCTCCTGAGGGATTCACGTTGGACGGTTAA

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Protein seq

MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG

Function Probable L-ascorbate peroxidase 7, chloroplastic [UniProtKB/Swiss-Prot:Q7XJ02]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_04g0434800 OsNip_04t0434800-02 Chr04 21622953 21627230 - RAP2018-11-26
CDS seq

ATGGCGGCCCAGCGACTCGCCGCCCTCCACGCCGCCGCGCCGTCGGCCTTCTCCTCCACCTCCTCCGCCTCGCATGGCCGCCCCGCGGCGCGATCCAGCACCACCGCTCTCCTCCCGGTGGCCCTCCCGCGCGCCTCCGCCACCCTCCGCGCCGCACCTTCTCGGCTCCTCCCCCAGGAGGCGAAGGCGGCGGGGAGCGGCAGGTCGGTGATGTGCATGGCGTCGGCGTCGGCGTCGGCGGCGTCGGCGGCGGTGGCGTCGGGCGCGGCGGAGCTGAAGGCCGCTCGCGAGGACATCAGGGAGCTCCTCAAGACGACGCACTGCCACCCCATCCTGGTTCGTCTTGGATGGCATGATTCCGGTACGTATGACAAGAATATTAAAGAGTGGCCACAACGAGGTGGAGCTAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGAGGAAGCTGGTGGTCCAAAGATTCCAATGACATATGGACGGATTGATGTCACAGGTCCTGAGCAGTGTCCACCTGAGGGGAAGCTTCCCGATGCTGGCCCAAGTGCACCTGCGGATCACTTGAGGAAGGTATTTTACAGGATGGGTCTTGATGACAAGGAGATTGTTGTGCTGTCTGGAGCACATACACTTGGAAGGTCCAGACCTGAACGGAGTGGCTGGGGGAAACCAGAAACGAAATATACTAAGAATGGCCCTGGTGCACCTGGTGGGCAATCGTGGACAGCTGAATGGCTTAAGTTTGATAACAGTTATTTCAAGGAGATAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTCTATGCAGAAAAATACGCAGAGGACCAAGAAGCATTCTTTAAAGACTATGCCGGAGCTCATGCTAAACTGAGCAATCTGGGTGCAAAATTCAATCCTCCTGAGGGATTCACGTTGGACGGTTAA

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Protein seq

MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG

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Gene Transcript Chromosome Start End Strand Source
OsNip_04g0434800 OsNip_04t0434800-01 Chr04 21622953 21627231 - RAP2018-11-26
CDS seq

ATGGCGGCCCAGCGACTCGCCGCCCTCCACGCCGCCGCGCCGTCGGCCTTCTCCTCCACCTCCTCCGCCTCGCATGGCCGCCCCGCGGCGCGATCCAGCACCACCGCTCTCCTCCCGGTGGCCCTCCCGCGCGCCTCCGCCACCCTCCGCGCCGCACCTTCTCGGCTCCTCCCCCAGGAGGCGAAGGCGGCGGGGAGCGGCAGGTCGGTGATGTGCATGGCGTCGGCGTCGGCGTCGGCGGCGTCGGCGGCGGTGGCGTCGGGCGCGGCGGAGCTGAAGGCCGCTCGCGAGGACATCAGGGAGCTCCTCAAGACGACGCACTGCCACCCCATCCTGGTTCGTCTTGGATGGCATGATTCCGGTACGTATGACAAGAATATTAAAGAGTGGCCACAACGAGGTGGAGCTAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGAGGAAGCTGGTGGTCCAAAGATTCCAATGACATATGGACGGATTGATGTCACAGGTCCTGAGCAGTGTCCACCTGAGGGGAAGCTTCCCGATGCTGGCCCAAGTGCACCTGCGGATCACTTGAGGAAGGTATTTTACAGGATGGGTCTTGATGACAAGGAGATTGTTGTGCTGTCTGGAGCACATACACTTGGAAGGTCCAGACCTGAACGGAGTGGCTGGGGGAAACCAGAAACGAAATATACTAAGAATGGCCCTGGTGCACCTGGTGGGCAATCGTGGACAGCTGAATGGCTTAAGTTTGATAACAGTTATTTCAAGGAGATAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTCTATGCAGAAAAATACGCAGAGGACCAAGAAGCATTCTTTAAAGACTATGCCGGAGCTCATGCTAAACTGAGCAATCTGGGTGCAAAATTCAATCCTCCTGAGGGATTCACGTTGGACGGTTAA

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Protein seq

MAAQRLAALHAAAPSAFSSTSSASHGRPAARSSTTALLPVALPRASATLRAAPSRLLPQEAKAAGSGRSVMCMASASASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTAEWLKFDNSYFKEIKEKRDQDLLVLPTDAALFEDPTFKVYAEKYAEDQEAFFKDYAGAHAKLSNLGAKFNPPEGFTLDG

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Gene Transcript Chromosome Start End Strand Source
OsNip_04g0434800 OsNip_04t0434800-03 Chr04 21622953 21627328 - IsoSeq
CDS seq

GCACCAACGAACCGCGAAAAACCCCCTCGAAACCCAAGGCGGCGGGCGTGGTGGTGGACTGGACTTTTTTCACCTCACTCCGCCTCGTCCCCGCCCCAAAGGCCACGCTCCCCTCCCTCCCACCAACCCACCACCAGCGTCACCCATGGCGGCCCAGCGACTCGCCGCCCTCCACGCCGCCGCGCCGTCGGCCTTCTCCTCCACCTCCTCCGCCTCGCATGGCCGCCCCGCGGCGCGATCCAGCACCACCGCTCTCCTCCCGGTGGCCCTCCCGCGCGCCTCCGCCACCCTCCGCGCCGCACCTTCTCGGCTCCTCCCCCAGGAGGCGAAGGCGGCGGGGAGCGGCAGGTCGGTGATGTGCATGGCGTCGGCGTCGGCGTCGGCGGCGTCGGCGGCGGTGGCGTCGGGCGCGGCGGAGCTGAAGGCCGCTCGCGAGGACATCAGGGAGCTCCTCAAGACGACGCACTGCCACCCCATCCTGGTTCGTCTTGGATG

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Protein seq

APTNREKPPRNPRRRAWWWTGLFSPHSASSPPQRPRSPPSHQPTTSVTHGGPATRRPPRRRAVGLLLHLLRLAWPPRGAIQHHRSPPGGPPARLRHPPRRTFSAPPPGGEGGGERQVGDVHGVGVGVGGVGGGGVGRGGAEGRSRGHQGAPQDDALPPHPGSSWM

OsNip_04t0434800-03OsNip_04t0434800-02OsNip_04t0434800-01AS21623000 bp21624000 bp21625000 bp21626000 bp21627000 bp21628000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr04 21622953 21623394 - OsNip_04t0434800-01 OsNip_04t0434800-01,OsNip_04t0434800-02 All
RI Chr04 21622953 21623394 - OsNip_04t0434800-01 OsNip_04t0434800-03,OsNip_04t0434800-01 All
A5 Chr04 21623178 21623322 - OsNip_04t0434800-03 OsNip_04t0434800-03,OsNip_04t0434800-02 All

Expression

Leaf Root Panicle
FPKM 12.365689 12.525783 9.373164

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0553200 RBH 43.168739 42.926872 15.479762
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g35520 RBH 7.982266 8.062280 2.289393
Nipponbare | IRGSP 1.0 | RAP-db Os04g0434800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0013900 RBH 0.606701 65.698204 7.456493
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0014750 RBH 0.0 16.258204 5.018095
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0014500 RBH 1.283328 70.787415 15.790768
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0014080 RBH 0.642818 2.122177 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0014400 RBH 5.420769 46.857716 31.695826
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0338400 RBH 6.6158295 43.879654 4.1261115
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0013320 RBH 0.391433 5.546934 1.843387
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0335300 RBH 6.7937095 20.554908 10.2461585
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0013860 RBH 1.563615 1.140854 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0013640 RBH 0.641183 41.570103 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0013610 RBH 6.223186 50.194233 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0014210 RBH 1.299097 5.981054 2.775356
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0014430 RBH 0.723306 35.124077 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G013500 RBH 0.833229 19.986788 4.748816
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0013510 RBH 1.949210 74.559555 16.583002
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Huazhong Agricultural University

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