Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020890 | OGI:02060130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:22427443-22431230 | ||||||||
| Gene Symbol | APX8, OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8 | ||||||||||
| DNA seq | ggggtgtccttattatttccctccttagtttagagaatgtcataatttccctcagtatagagaatgtagtcatgagccatgacaactagataatgtgacatttctctccgacaaatatttctctagaggaattactcaagaagttcagaaagtactggaatccattcacatgcccatccttttacctcaatttatttacggaataacgactcaaaacatggaaagagaaacacgcaaatcttagcacaggcagaacaactcaaaacactcatcagaggaggtcatcagaccatcgctctcagctcccgagcagagacgtcaagaaggccagccctccgatcaagagcatgatgttgaggaagtagttggactgcagaggcttgtccgggctgcctccgaatccctcgtactccgccctgatcttctgcttcatcgagtccgacagctccttctgcaaaagccattgcaagataccatgcattgtccatcaaatctagggctagaagctaggcttcgtggagagtgcatacctttccgtaggagtatttcgcagcgacgaagggctctggttgcggtgctgcaccgttgttgtcatccgctggcgatgatgccactgctgctcctaccgttactggaactggagttggttcagcttccttcttctcctcgactggtggaggtggtgctgctgctgctggcgctggtgctggttcaggatccttctcttcgacggctggttcatcgtccagtgaaaatccctgcaggaaaatcacatccatcacttcctgatcgaaggctggtaaagttggactctgtaaatatccaacctacaattgcactggtttttacatgaagaacagctaagaaaagctgccatagtaaaccccatttcgttgcatcgcagaagaaagattgatatgatggactacctcaaactcccagtgtttggattacattcggtaaaaagaaaaactatctgaactatatttctgtcctgaaggtccagtactccatcttactgtcacataagtacattactgaattctctagaaaaaaaatacattacaaaagatatctactcgatgtggacgaggaatcagggagtcatgttttgaacttgcaaacaagaggaagaaaatctgccatgttctaataaaagaacttaagagcttaagtgtctttcgtattgtttatgattgtttaggcacaattggttgccaggagatcaaaatgaaaaaaaagatggcagtcctcacctcaggtggatcgaactttgcaccaaggtcgctcagtttagcatgagcttcagcgtagtctttaaagaatgcctcctgatcctctgcatatttttcggcatatacctgcatatgttgcagatatttcagacagtgacctatgagctattcaagccacaaattgagcacaaccaaataaccttgaaggacggatcctcaaataatgcagcatctgtgggtagcactagaagatcctggtccctttgctcttttatgtcctgaaacattatcatcagctgaatcatcacatattcaaatgaaaaaaataattttgtaaaccatgacaaaatgctaacacaccttgaagtaactgttatcaaacttcaaccattcaactgtccatgattgccctccaggttcaccaggcccatccttctgtagaccacaataataggagccacctttaaatgtcagtctgaaaactgaaactaatctgatttgctattgtgctggtgtgattaaggtaagattgcatcgaaaagttaatcttcatttccccacagagaagtatcagggcttagagaatgacaaagttgttagctatgaagttcttagcatcctaattctattttaccattatatgcatacaaagaaacgtaaggataacccattttgtaaaatcctgaattaaaacattatttatttacagcataaggacaaagtattcacggattttaaaagcataatatggtgcttacttacaagataacacaaaaaagtacatgcattgttttcacctctgcctgaatgtctcaaaaaatgtaggggcaattgcaaatttaccactactttgaatcgttattgcaaaactgccactagaaaattacaaaaatatcactaatatcactagaactgtcattcgagtagcatccttgcaatattgaaaaaaccggtggcaaatttgcaaatgccccaaaaatgtaatattctatacccagagtgtagaacattgaaggtctggccatgcctagaacttcctactgctgaaaataacttatttttcctgttgagtttccaaagtggacaagaaaacatacagtatattttgtttctggctttccccagccactcctgtcaggtcttgatcttccaagtgtgtgtgctccagataatgcaacaatttcctgcataaatagtccaaaagaaatggctatacaacatacatgaagaacaaatagcagataggcaactaatttcttttttgcatcatccacaccttgtcatcaaggcccatcctgtagaatacctccctaagatgatcagcgggcacacgtggaccggcatctggggggcatttatcaacaccagaaggtcactctttgataagttcctctcacaattcataaatgcaaacgttgatcagaaacagaatgaagaacttaatggaaacactgaccaggaagcctcccctctggtgggcactgctcagctgctgtgacatcaactcgtccatatttcattggaattttcggcccaccagcttcctgcaagaaatttttctcaaaagattcaagcacatagactaccgatcatccaaaaaatatctagcaaagtcactagagcagagagaagaagtctgagacctcaattgctgtagcacttgccaactggaacaaatcagcataagttatacccgggtatttgtccttgattggttggataagcttcaaagcattaatcagacctatcaaaattccaaccaaaaccatacgattatgaaggaaatcagcacgattactccacgaatttcctgaattcgaaattgcactgccgagacacgagaaattaagtaccagcattggctccgtggctcaattcggcgtcaaatctcaagctcccgtcggctccgcccctctgcggccactcctcgatgttcttgtcgtacgtgccagaatcgtgccacccaagacggacctgtacatggtagcaggatcgcaggatttcatcatctctgactcttctctgttcatatggatgcgagagctgagatggcgcgggcgttccgtaccatgatggggtggcagtaggtggtcttgaggatctccctgatgtcctcccgggcgctcttgagctgcgccgcgtcggacgccgccaccgccgccgccgccatgcaccggaccaccgcccgcgcccccgcgccggcgcgcccgctcctcgtcgtcgcagccttctgcaggtgccacgcatcagtcaactcagaacacctcgattcaacccccccccccaccccccaaaaaagaaaacacgagccgagctaaaactattgcgaacctgcgggaagcgagacgggcgggagcggaggcggaggccgccggcgctggtggagcagcatgggaaggaggcggcggccgcggcggagacgcgggggcgcggggggggaggggacggagcaggcgagggcgaggcagccgggaggagggaggcggcgatgcgctccgccatggcgcgcgcgctcgagtcgagtgagttttttcttcttttcttttttttttt
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| CDS seq | atggcggagcgcatcgccgcctccctcctcccggctgcctcgccctcgcctgctccgtcccctccccccccgcgcccccgcgtctccgccgcggccgccgcctccttcccatgctgctccaccagcgccggcggcctccgcctccgctcccgcccgtctcgcttcccgcagaaggctgcgacgacgaggagcgggcgcgccggcgcgggggcgcgggcggtggtccggtgcatggcggcggcggcggtggcggcgtccgacgcggcgcagctcaagagcgcccgggaggacatcagggagatcctcaagaccacctactgccaccccatcatggtccgtcttgggtggcacgattctggcacgtacgacaagaacatcgaggagtggccgcagaggggcggagccgacgggagcttgagatttgacgccgaattgagccacggagccaatgctggtctgattaatgctttgaagcttatccaaccaatcaaggacaaatacccgggtataacttatgctgatttgttccagttggcaagtgctacagcaattgaggaagctggtgggccgaaaattccaatgaaatatggacgagttgatgtcacagcagctgagcagtgcccaccagaggggaggcttcctgatgccggtccacgtgtgcccgctgatcatcttagggaggtattctacaggatgggccttgatgacaaggaaattgttgcattatctggagcacacacacttggaagatcaagacctgacaggagtggctggggaaagccagaaacaaaatatactaaggatgggcctggtgaacctggagggcaatcatggacagttgaatggttgaagtttgataacagttacttcaaggacataaaagagcaaagggaccaggatcttctagtgctacccacagatgctgcattatttgaggatccgtccttcaaggtatatgccgaaaaatatgcagaggatcaggaggcattctttaaagactacgctgaagctcatgctaaactgagcgaccttggtgcaaagttcgatccacctgagaaggagctgtcggactcgatgaagcagaagatcagggcggagtacgagggattcggaggcagcccggacaagcctctgcagtccaactacttcctcaacatcatgctcttgatcggagggctggccttcttgacgtctctgctcgggagctga
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| Protein seq | MAERIAASLLPAASPSPAPSPPPPRPRVSAAAAASFPCCSTSAGGLRLRSRPSRFPQKAATTRSGRAGAGARAVVRCMAAAAVAASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGEPGGQSWTVEWLKFDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSDLGAKFDPPEKELSDSMKQKIRAEYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSLLGS |
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| Function | Probable L-ascorbate peroxidase 8, chloroplastic [UniProtKB/Swiss-Prot:Q69SV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020890 | OsLima_02g0020890.01 | Chr02 | 22427443 | 22431230 | - | NAM | ||
| CDS seq | atggcggagcgcatcgccgcctccctcctcccggctgcctcgccctcgcctgctccgtcccctccccccccgcgcccccgcgtctccgccgcggccgccgcctccttcccatgctgctccaccagcgccggcggcctccgcctccgctcccgcccgtctcgcttcccgcagaaggctgcgacgacgaggagcgggcgcgccggcgcgggggcgcgggcggtggtccggtgcatggcggcggcggcggtggcggcgtccgacgcggcgcagctcaagagcgcccgggaggacatcagggagatcctcaagaccacctactgccaccccatcatggtccgtcttgggtggcacgattctggcacgtacgacaagaacatcgaggagtggccgcagaggggcggagccgacgggagcttgagatttgacgccgaattgagccacggagccaatgctggtctgattaatgctttgaagcttatccaaccaatcaaggacaaatacccgggtataacttatgctgatttgttccagttggcaagtgctacagcaattgaggaagctggtgggccgaaaattccaatgaaatatggacgagttgatgtcacagcagctgagcagtgcccaccagaggggaggcttcctgatgccggtccacgtgtgcccgctgatcatcttagggaggtattctacaggatgggccttgatgacaaggaaattgttgcattatctggagcacacacacttggaagatcaagacctgacaggagtggctggggaaagccagaaacaaaatatactaaggatgggcctggtgaacctggagggcaatcatggacagttgaatggttgaagtttgataacagttacttcaaggacataaaagagcaaagggaccaggatcttctagtgctacccacagatgctgcattatttgaggatccgtccttcaaggtatatgccgaaaaatatgcagaggatcaggaggcattctttaaagactacgctgaagctcatgctaaactgagcgaccttggtgcaaagttcgatccacctgagaaggagctgtcggactcgatgaagcagaagatcagggcggagtacgagggattcggaggcagcccggacaagcctctgcagtccaactacttcctcaacatcatgctcttgatcggagggctggccttcttgacgtctctgctcgggagctga
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| Protein seq | MAERIAASLLPAASPSPAPSPPPPRPRVSAAAAASFPCCSTSAGGLRLRSRPSRFPQKAATTRSGRAGAGARAVVRCMAAAAVAASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGEPGGQSWTVEWLKFDNSYFKDIKEQRDQDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSDLGAKFDPPEKELSDSMKQKIRAEYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSLLGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020890 | OsLima_02g0020890.02 | Chr02 | 22427501 | 22431230 | - | IsoSeq | ||
| CDS seq | aaaaaaaaagaaaagaagaaaaaactcactcgactcgagcgcgcgcgccatggcggagcgcatcgccgcctccctcctcccggctgcctcgccctcgcctgctccgtcccctccccccccgcgcccccgcgtctccgccgcggccgccgcctccttcccatgctgctccaccagcgccggcggcctccgcctccgctcccgcccgtctcgcttcccgcagaaggctgcgacgacgaggagcgggcgcgccggcgcgggggcgcgggcggtggtccggtgcatggcggcggcggcggtggcggcgtccgacgcggcgcagctcaagagcgcccgggaggacatcagggagatcctcaagaccacctactgccaccccatcatggtccgtcttgggtggcacgattctggcacgtacgacaagaacatcgaggagtggccgcagaggggcggagccgacgggagcttgag
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| Protein seq | KKKEKKKKLTRLERARHGGAHRRLPPPGCLALACSVPSPPAPPRLRRGRRLLPMLLHQRRRPPPPLPPVSLPAEGCDDEERARRRGGAGGGPVHGGGGGGGVRRGAAQERPGGHQGDPQDHLLPPHHGPSWVARFWHVRQEHRGVAAEGRSRRELE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 22427893 | 22428699 | - | OsLima_02g0020890.02 | OsLima_02g0020890.02,OsLima_02g0020890.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.192226 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0553200 | RBH | 43.168739 | 42.926872 | 15.479762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34810 | RBH | 27.854622 | 28.494986 | 4.072766 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0553200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020940 | RBH | 7.488917 | 2.145012 | 18.584818 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021020 | RBH | 7.941366 | 0.0 | 11.275767 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021000 | RBH | 14.864182 | 0.0 | 20.543818 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020750 | RBH | 3.114301 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020670 | RBH | 90.532433 | 1.819336 | 37.968788 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0344600 | RBH | 133.9300045 | 4.5148605 | 4.25626 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020390 | RBH | 8.798441 | 0.0 | 6.162929 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0369800 | RBH | 126.589657 | 3.2805885 | 2.5557585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013860 | RBH | 1.563615 | 1.140854 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020630 | RBH | 10.555401 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021070 | RBH | 111.196999 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020760 | RBH | 20.230913 | 0.125778 | 7.619563 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020580 | RBH | 14.303725 | 0.756501 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021030 | RBH | 3.815790 | 0.000000 | 10.438901 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020760 | RBH | 29.677988 | 4.308498 | 27.369259 |
