Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013160 | OGI:04011900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22275984-22276735 | ||||||||
| Gene Symbol | SDRLK-28 | ||||||||||
| DNA seq | tcacctatcatctctggcgctaggccgaagtatcggccgttccagtccccactggaccaatacgccacagttgagttccatagcagatgaccctCcccCATTGAGCCCTAACTCCAAGGAAAATATACCAGGAGCCTGATCAACCGAACTTTTCCTGGAAACAAGACGGCGGTTCAGGCCGGTGACCTTGTCCCAGCCGATCTTCGCACCGGCGAAAAGAGTATCTGTTGGGTAGTCGAAGCTCTGCCAGAAAATGTTGGATGAGTTTGAGGAGCTTCGTAGGACAAGGTTGCCATTGTTCAGAAGCACGGCAATGGTGTCATTGGTTGTGATGTTGGCACGGGTAGACCATATGATGGATTTGGTGGCATGATCCAGGATGGCCAGGTTTCCATCACCGGAGATTGCGAGCTCCGGTGAAGTGGGGTCCACCACTGGGTTCTCGCCATTGGCGGTCCACAGCGGGGTTAGCTTGGAGACCTTGTTGAACCATATGCCAAGGTAGGAGTTGTGGTTGGTGTAGGAGGAGGACTCATTACCTGGCTTGAAGAAGCCGAGGGCGAACTTGCTGTTGTTGGAGACAAGCCTGTCACTGCCGGCAAGTGAATGGCCGGggtgacacggtatccgtggcggcggcgtagctcgccggagtgtacagggagaggagcaggaggccaagaaggacatgacaagggagaagcatgaggaagcaagaagatgaacacgggggaagagtggtgaaggaaaac
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| CDS seq | atgtccttcttggcctcctgctcctctccctgtacactccggcgagctacgccgccgccacggataccgtgtcaccCCGGCCATTCACTTGCCGGCAGTGACAGGCTTGTCTCCAACAACAGCAAGTTCGCCCTCGGCTTCTTCAAGCCAGGTAATGAGTCCTCCTCCTACACCAACCACAACTCCTACCTTGGCATATGGTTCAACAAGGTCTCCAAGCTAACCCCGCTGTGGACCGCCAATGGCGAGAACCCAGTGGTGGACCCCACTTCACCGGAGCTCGCAATCTCCGGTGATGGAAACCTGGCCATCCTGGATCATGCCACCAAATCCATCATATGGTCTACCCGTGCCAACATCACAACCAATGACACCATTGCCGTGCTTCTGAACAATGGCAACCTTGTCCTACGAAGCTCCTCAAACTCATCCAACATTTTCTGGCAGAGCTTCGACTACCCAACAGATACTCTTTTCGCCGGTGCGAAGATCGGCTGGGACAAGGTCACCGGCCTGAACCGCCGTCTTGTTTCCAGGAAAAGTTCGGTTGATCAGGCTCCTGGTATATTTTCCTTGGAGTTAGGGCTCAATGgggGagggtcatctgctatggaactcaactgtggcgtattggtccagtggggactggaacggccgatacttcggcctagcgccagagatgataggtga
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| Protein seq | MSFLASCSSPCTLRRATPPPRIPCHPGHSLAGSDRLVSNNSKFALGFFKPGNESSSYTNHNSYLGIWFNKVSKLTPLWTANGENPVVDPTSPELAISGDGNLAILDHATKSIIWSTRANITTNDTIAVLLNNGNLVLRSSSNSSNIFWQSFDYPTDTLFAGAKIGWDKVTGLNRRLVSRKSSVDQAPGIFSLELGLNGGGSSAMELNCGVLVQWGLERPILRPSARDDR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013160 | OsLima_04g0013160.01 | Chr04 | 22275984 | 22276735 | - | NAM | ||
| CDS seq | atgtccttcttggcctcctgctcctctccctgtacactccggcgagctacgccgccgccacggataccgtgtcaccCCGGCCATTCACTTGCCGGCAGTGACAGGCTTGTCTCCAACAACAGCAAGTTCGCCCTCGGCTTCTTCAAGCCAGGTAATGAGTCCTCCTCCTACACCAACCACAACTCCTACCTTGGCATATGGTTCAACAAGGTCTCCAAGCTAACCCCGCTGTGGACCGCCAATGGCGAGAACCCAGTGGTGGACCCCACTTCACCGGAGCTCGCAATCTCCGGTGATGGAAACCTGGCCATCCTGGATCATGCCACCAAATCCATCATATGGTCTACCCGTGCCAACATCACAACCAATGACACCATTGCCGTGCTTCTGAACAATGGCAACCTTGTCCTACGAAGCTCCTCAAACTCATCCAACATTTTCTGGCAGAGCTTCGACTACCCAACAGATACTCTTTTCGCCGGTGCGAAGATCGGCTGGGACAAGGTCACCGGCCTGAACCGCCGTCTTGTTTCCAGGAAAAGTTCGGTTGATCAGGCTCCTGGTATATTTTCCTTGGAGTTAGGGCTCAATGgggGagggtcatctgctatggaactcaactgtggcgtattggtccagtggggactggaacggccgatacttcggcctagcgccagagatgataggtga
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| Protein seq | MSFLASCSSPCTLRRATPPPRIPCHPGHSLAGSDRLVSNNSKFALGFFKPGNESSSYTNHNSYLGIWFNKVSKLTPLWTANGENPVVDPTSPELAISGDGNLAILDHATKSIIWSTRANITTNDTIAVLLNNGNLVLRSSSNSSNIFWQSFDYPTDTLFAGAKIGWDKVTGLNRRLVSRKSSVDQAPGIFSLELGLNGGGSSAMELNCGVLVQWGLERPILRPSARDDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.161581 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0420900 | SBH | 0.294624 | 1.636690 | 1.528403 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34370 | SBH | 0.136873 | 0.490243 | 0.389432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0420900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013150 | SBH | 0.031411 | 0.866329 | 0.576742 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013970 | SBH | 0.0 | 0.845964 | 0.619651 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013690 | SBH | 0.688462 | 1.559885 | 4.573661 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013640 | RBH | 0.000000 | 1.913781 | 1.774626 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0330000 | SBH | 0.7197965 | 2.2894645 | 3.348693 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012550 | SBH | 0.018672 | 0.185409 | 0.220018 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0327400 | SBH | 0.717196 | 2.293277 | 3.4411705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019630 | RBH | 0.020116 | 0.055730 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012800 | SBH | 0.035199 | 2.476301 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012810 | SBH | 0.000000 | 10.048559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013410 | SBH | 0.169686 | 0.172605 | 0.267748 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013560 | SBH | 0.083392 | 0.400274 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
