Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0010550 | OGI:04058500 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:19862490-19863764 | ||||||||
| Gene Symbol | WAK38, OsWAK38, RLCK145, OsRLCK145 | ||||||||||
| DNA seq | atgcgatcctttcgcttccatcttcttcaacaagcagcaaactattttgatgaagcgcgggtcgttggacatggaggttttggaaaggtttacgtgggagagttggagggtaaaaagtttgccatgaaacgaaggagccttgagtcctctcaaggccagaaggagttccaagcggagattgaactactgtcagggctgaaccaccgaaatctggtttctctgattgggttctgtgatgaagagaatgaattgatcttggtttatgaatacatggaaaaagggtctctgatgagccatctgtatggctctggtaaaccctcgctcctcaattggaagcagcgggtggaggtttgcataggaacagccaagggactgcactatcttcacactaaggccattatccaccgtgacgtcaagtcttcaaacatcttgcttgatgaaaagctccagtccaaggttactgactttgggatatcaaagcctggtcctgagttggaccaaacttatgtcatcactcaagtgaagggcagctttgggtatcttgatcctgaatattgcaagacgatgctgctcacccagaagtctgatgtctactcttttggtgttgtcttgcttgaggtcctatgtggcagaccagcgatcgaccaaacacttccgctcaaggaggtgaacttggcagactggggaaaggagatgctgaggaatggacagctggaacaaattgttgatcaggaaatttcaggcacagtcaaacagcgttctctgatgccatttggccaaattgtggccaggtgcctggaagacaagggagcggatcggccatcgatgggagacgtactcaggtacctggagtacgttcacagtttggaagccaagaagaatgccttaacacgatccgtagctatgatttgcgtgaaaatttcaaatgtagctgatggtttctccggcccatcgactccgcaccgggtgtctccagtcttggatgatagcattatcagtgtagctggaaattcagatgaacctgttcatgacatctctgctggaagctcagatgatgagactgaccatggtatctctgctggaaactcagatgagcatgatcataacgtctcttctcagctaataaaaccggggaaaagtaaagcattgattcgatctaatgctaaaattttcgaaagatatgaggatcctgaccatggggtctcttctgagctaataggaccggggaaacgtaaagcattgactcgatctgatgctaaaattttcgagagatga
More
|
||||||||||
| CDS seq | atgcgatcctttcgcttccatcttcttcaacaagcagcaaactattttgatgaagcgcgggtcgttggacatggaggttttggaaaggtttacgtgggagagttggagggtaaaaagtttgccatgaaacgaaggagccttgagtcctctcaaggccagaaggagttccaagcggagattgaactactgtcagggctgaaccaccgaaatctggtttctctgattgggttctgtgatgaagagaatgaattgatcttggtttatgaatacatggaaaaagggtctctgatgagccatctgtatggctctggtaaaccctcgctcctcaattggaagcagcgggtggaggtttgcataggaacagccaagggactgcactatcttcacactaaggccattatccaccgtgacgtcaagtcttcaaacatcttgcttgatgaaaagctccagtccaaggttactgactttgggatatcaaagcctggtcctgagttggaccaaacttatgtcatcactcaagtgaagggcagctttgggtatcttgatcctgaatattgcaagacgatgctgctcacccagaagtctgatgtctactcttttggtgttgtcttgcttgaggtcctatgtggcagaccagcgatcgaccaaacacttccgctcaaggaggtgaacttggcagactggggaaaggagatgctgaggaatggacagctggaacaaattgttgatcaggaaatttcaggcacagtcaaacagcgttctctgatgccatttggccaaattgtggccaggtgcctggaagacaagggagcggatcggccatcgatgggagacgtactcaggtacctggagtacgttcacagtttggaagccaagaagaatgccttaacacgatccgtagctatgatttgcgtgaaaatttcaaatgtagctgatggtttctccggcccatcgactccgcaccgggtgtctccagtcttggatgatagcattatcagtgtagctggaaattcagatgaacctgttcatgacatctctgctggaagctcagatgatgagactgaccatggtatctctgctggaaactcagatgagcatgatcataacgtctcttctcagctaataaaaccggggaaaagtaaagcattgattcgatctaatgctaaaattttcgaaagatatgaggatcctgaccatggggtctcttctgagctaataggaccggggaaacgtaaagcattgactcgatctgatgctaaaattttcgagagatga
More
|
||||||||||
| Protein seq | MRSFRFHLLQQAANYFDEARVVGHGGFGKVYVGELEGKKFAMKRRSLESSQGQKEFQAEIELLSGLNHRNLVSLIGFCDEENELILVYEYMEKGSLMSHLYGSGKPSLLNWKQRVEVCIGTAKGLHYLHTKAIIHRDVKSSNILLDEKLQSKVTDFGISKPGPELDQTYVITQVKGSFGYLDPEYCKTMLLTQKSDVYSFGVVLLEVLCGRPAIDQTLPLKEVNLADWGKEMLRNGQLEQIVDQEISGTVKQRSLMPFGQIVARCLEDKGADRPSMGDVLRYLEYVHSLEAKKNALTRSVAMICVKISNVADGFSGPSTPHRVSPVLDDSIISVAGNSDEPVHDISAGSSDDETDHGISAGNSDEHDHNVSSQLIKPGKSKALIRSNAKIFERYEDPDHGVSSELIGPGKRKALTRSDAKIFER |
||||||||||
| Function | Receptor-like protein kinase HERK 1 [UniProtKB/Swiss-Prot:Q9LX66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0010550 | OsLima_04g0010550.01 | Chr04 | 19862490 | 19863764 | + | NAM | ||
| CDS seq | atgcgatcctttcgcttccatcttcttcaacaagcagcaaactattttgatgaagcgcgggtcgttggacatggaggttttggaaaggtttacgtgggagagttggagggtaaaaagtttgccatgaaacgaaggagccttgagtcctctcaaggccagaaggagttccaagcggagattgaactactgtcagggctgaaccaccgaaatctggtttctctgattgggttctgtgatgaagagaatgaattgatcttggtttatgaatacatggaaaaagggtctctgatgagccatctgtatggctctggtaaaccctcgctcctcaattggaagcagcgggtggaggtttgcataggaacagccaagggactgcactatcttcacactaaggccattatccaccgtgacgtcaagtcttcaaacatcttgcttgatgaaaagctccagtccaaggttactgactttgggatatcaaagcctggtcctgagttggaccaaacttatgtcatcactcaagtgaagggcagctttgggtatcttgatcctgaatattgcaagacgatgctgctcacccagaagtctgatgtctactcttttggtgttgtcttgcttgaggtcctatgtggcagaccagcgatcgaccaaacacttccgctcaaggaggtgaacttggcagactggggaaaggagatgctgaggaatggacagctggaacaaattgttgatcaggaaatttcaggcacagtcaaacagcgttctctgatgccatttggccaaattgtggccaggtgcctggaagacaagggagcggatcggccatcgatgggagacgtactcaggtacctggagtacgttcacagtttggaagccaagaagaatgccttaacacgatccgtagctatgatttgcgtgaaaatttcaaatgtagctgatggtttctccggcccatcgactccgcaccgggtgtctccagtcttggatgatagcattatcagtgtagctggaaattcagatgaacctgttcatgacatctctgctggaagctcagatgatgagactgaccatggtatctctgctggaaactcagatgagcatgatcataacgtctcttctcagctaataaaaccggggaaaagtaaagcattgattcgatctaatgctaaaattttcgaaagatatgaggatcctgaccatggggtctcttctgagctaataggaccggggaaacgtaaagcattgactcgatctgatgctaaaattttcgagagatga
More
|
|||||||
| Protein seq | MRSFRFHLLQQAANYFDEARVVGHGGFGKVYVGELEGKKFAMKRRSLESSQGQKEFQAEIELLSGLNHRNLVSLIGFCDEENELILVYEYMEKGSLMSHLYGSGKPSLLNWKQRVEVCIGTAKGLHYLHTKAIIHRDVKSSNILLDEKLQSKVTDFGISKPGPELDQTYVITQVKGSFGYLDPEYCKTMLLTQKSDVYSFGVVLLEVLCGRPAIDQTLPLKEVNLADWGKEMLRNGQLEQIVDQEISGTVKQRSLMPFGQIVARCLEDKGADRPSMGDVLRYLEYVHSLEAKKNALTRSVAMICVKISNVADGFSGPSTPHRVSPVLDDSIISVAGNSDEPVHDISAGSSDDETDHGISAGNSDEHDHNVSSQLIKPGKSKALIRSNAKIFERYEDPDHGVSSELIGPGKRKALTRSDAKIFER
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.095301 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0619600 | SBH | 0.429309 | 0.765098 | 1.319568 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52860 | SBH | 0.277087 | 0.501691 | 0.324198 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0619600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026810 | SBH | 0.055826 | 4.241183 | 2.648667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027590 | SBH | 0.043533 | 1.441995 | 1.263705 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027320 | SBH | 0.381933 | 2.695840 | 3.648110 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027300 | SBH | 0.756193 | 6.159431 | 2.683366 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0296100 | SBH | 0 | 0 | 0.2396105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009540 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0499800 | SBH | 3.47952 | 3.8582465 | 10.6289555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009730 | RBH | 0.0 | 2.369444 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026110 | SBH | 0.356525 | 11.817934 | 3.377017 |
