Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_03g0033380 OGI:03083480 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr03:32753698-32753889
Gene Symbol SCP19, OsSCP19
DNA seq

atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctctccctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgaGaccgggtaa
CDS seq

atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctctccctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgaGaccgggtaa
Protein seq

MVLELLTMAAHRVGRCMLLQPPRLATCVLSLLLPLLLPCSASSSVITHLPGFHGRLPFHLETG
Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_03g0033380 OsLima_03g0033380.01 Chr03 32753698 32753889 + NAM
CDS seq

atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctctccctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgaGaccgggtaa
Protein seq

MVLELLTMAAHRVGRCMLLQPPRLATCVLSLLLPLLLPCSASSSVITHLPGFHGRLPFHLETG
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.215740 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0730400 SBH 0.000000 0.135461 4.649220
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g52040 RBH 0.000000 0.110022 1.170091
Nipponbare | IRGSP 1.0 | RAP-db Os03g0730400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0033460 RBH 0.0 26.226118 2.756449
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0033160 SBH 0.061128 5.233663 2.898850
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0033230 RBH 0.0 33.996284 5.481895
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0033550 SBH 0.0 0.558627 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0033170 SBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0509800 RBH 15.8599995 12.9050995 4.584564
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0032910 RBH 0.000000 0.657357 1.215913
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0510800 RBH 8.850739 7.067128 4.8354455
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0033370 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0033170 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0033100 RBH 0.642138 0.515224 0.785306
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0033100 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G032890 RBH 0.000000 2.657251 5.664279
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0032730 SBH 0.395599 36.973579 21.343933
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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