Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0032730 | OGI:03083480 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:32292478-32299022 | ||||||||
| Gene Symbol | SCP19, OsSCP19 | ||||||||||
| DNA seq | aacacaactactgacctcatgtcctcattgattataagcttgagctttacttagttccacaaaaaaaaaaactgttgacaaaaaaactcagatcttcaagctgccagagcactgaaaaaggaagcaaagcaatggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctcttcctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccgggtaaggggctccctgtatgttttcttttctccagctgttacatatgacttttaatcgaagggaaattggaaactcaaacgcaaaagggaatcgaatcccaggggaattaggccatccacaatgggtgcccccaggtcgtgcccctagcgacggcggcaaacttttccgtccgcgccgtccccccgcgatggagcgcgtccctctgctgagggacgcggctctctccgctccccgccagcttttcgtggggagctgcagccaggcgacgcgttggggggcttcggcgcttgtggacacggtttcctcgcttgcgatttccccttctaccctcgacctcgtcgctgggaggaggccgacggcggtggggaagaacgcgaggcggcggcgagagagacaggcggcatcgccgagctgtgaggagggaggcggcgtcgagagagaagagagaggcgacggcgacgacgaccggatccacggcggcgacgacggatccgcggcgacgacgacggatccgcggcgacgacgacggatccgcggtgacgacgacaggatccgcgacggcgaccacggatccgcggcgacgacgaccggatccggcggagcagtgaccgcgtcgtggcggcgccgccgtcgccaccgcttgaggcgcccgtggtcgctgccgtcagccgccgcgcggagacgggcggcctcttcaacctccgccttggcctcgacctcggccaccgcgacctcgtccaccttcgacttggcctcctccgcgcggcggcgagagagaggcaagcagcggtgacgcaagagagaggagaaagcggcggcggcgacggctggggagggaggtggcgccggcgctcgtgggagagagagggagaggaagggggaggacggcgacgacgccgagttgaggaagcgaggcgggtccgagcgaagaaaaaaagaagaggaggggaaagaggcggagaaaaaaagaggaaagagagagagggtgggggcggggagggagaggggtagtatagtaaagtacccactgtgggtttgttttgttgggacacccattatgagttgagtgtctttatccagttgcttcagattttgaggagcccattcagaggtgtctaccattgcgagccgagttcccctacgagtgtcctcagttagtgaggacattttagaagtggctcacattgtgaatgcccttaggagtagagcagacgactcgttttgcttgatttggttggtttctgactttctgcagagagaatggtatgggatgccactacgtatttacactattctctgttgaaaaataaatttattttgtcagtgaatctgggacagtgggactgagggtgtacatggcttagggagacgctgatccgcggctgcaggcgcgtggtcagtttccaccctttcgtcctcccccatatactactgtatgtactctctccgtccagaatatagcaaactagaaccgaacgggatgtatcctagtactacgaatctggacatgtccctgttcagattcgtagtactaagatacgtcccatccgatcttaggttgctatattctgggacggagggagtatgtatatataaccatatacgcatatacttcctctgtttcacaatgtaagttattctagtattttccacatttatattgatgtatgtttagatttattaacatcaatataaaagtgaaaaatgctagaatgacttacattgtgaaacgaagaaaatacttagaatttatacataaactatataggtatagagtttataggtatacatgtaaagttataaagtttgcatgtatagggtagaaaaaatatatatttggtgggtccgaaactgatagccggtgccaccctgctaacgactgattgctaattagcgattcgaaatggtttggattaagtaattaccttattatagtgtatagcaattctaatattttaagttatttctcggttcctaatattaaaaaaacgtatttacccgttacaatgcacggatattttttctagctggaccttaattgagaaataaccttgcaggtatgttggtgtggacgaggagacgggcactgagctcttctactacttcgttgaatcggagaggagcccaagtacaggccctgtgatcctctggttgacaggcgggcctggctgctccggattcagcggtgtcgtctttgaagtaggttagtagtagtgattgggatttgatgatgagaaaaagatttgtagaactgacagagactatgctttcattgctctaaggttaatactattctcatgttggctcaatcgaatataaattatgcatgatttttttgagttaataaattatgcatgattatatatatttttgagtaaattacatcatcggtaaacaaacttatcatgtgggtgcaatctagtgcacgaatttgtaaaatgctcgttttggtgcatgaatttgtctggtgtgtgtgcggggaaaaaccaaaaatacgctacgtagctaatcttgttgatttagaggttgattagcatactaggtaaacacacacacacatgagaagattgttgttagatatacacctcttcataaaaagatagaatatgatatagtgattgtaaaaagataatgattgatataagggttagaaatatatgaaattcatcattaccatgataaaggataaaatagaaaccaaaattataaatataatatgtcttatgcatactcattacacatatacacgtcacgtcctgataaacatcaacttcgtaaaattaacattgataagccattttagtcatggtttgcacgaactggaaacgaacactttacaagttgatatactaaattacacccacctaacacatattcgtgcatgattatatggtggccaagattgtacagtttgccatggttttggactactggggagcaattgggtctgctcctaggctctgtgctctctacactcacacatattttacattgtacgtgttaaccttctgatatccataggtgacgattatgtacaggacctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcagtattcatggacacaggtgatatgctcctctaaaacacacaggatatttctctctacctcattttacttatttgtggttctgttactatgatcagatggcaagcatcctcttcttggacactcctgttggttctggtttctcatacgctcatgatcctaaaggttataatgtcggggacatatcatcgtctttgcaagtcgtaacatttctgaagaaggtgacctgaaagcacatctggttttctactacagtaaaaatggaagaacaacttctatatttattacttaccatcttgtacgtactagtgtagtggttcaatgatcacccacgctatctctcaaatcatttctatgttggaggaagctcatacgctggaaaggtgattccaattatcatgaagttcatttcagaaggtaatcaactatatatttcacatattctgcgatgaattagatgagaagaTtttttttagataatggaatataatcccgacctttgctcaaagagttacagccaattattacaccaacttaacaaaaattcacacctgaataaacaaaagcacagacaaactaataaaaactcacacagcataaaaagaccacaaaaattattgaattttatttgtgaatctccatcgaaagttggcgaacagctgcataaccaatgactcaagattacgacatgcacctttcactgacttgatttcttcatcacactttagtagctgaacccaagatcagagccagtatgttgccttgaaaagattttttattaactcccacaagccaattctcaaaaatataagatatactatgaggagataatttcggaaatcatctaatgtatatgttttagaacctctgttgtgttatataaaagatgcaaaaagtgttcagcggaaagttcaaactaatctcaaaagacaaatggtgcatttgtttgttaatttcttcagagtgataagctcactatgttttcaacctttgaacttcaattcgccacaaaccaattaatgtttgcatctacttatgtttaatcgttacctccaatcaaataactaattccttacctcgtttggtttatgcctgctctccaggaattgaacaaaggcagcagccattggttaatcttaaggcatggcattctgtatccttcaaacaactagtgacctttgcatagttaataatgtggcatcatgtttcttatattctttttggtgcttatatatgaaatcagttacaggggtatatagttggcaaccccattacaggctcgaagattgatgataatttcaaaattccatattctcatggtgttgggatcatatctgatcaattatacgaggtaatttcacatccatacaattagaatatggtgatacaactctgtagcattttcctttccctgtttgtaggctgcagtagcaaactgcaatggagattatgtgaccacaacaaatgaattatgtgctaaggccctaaatgctattgataatgtaagattcttgtctaacctagtttagaagtttactaatatccaactactatcaaacttatgcatatcccttttgtttcagctcatgtctgaagttgattatggaaatatcttggatgataaatgtgttcgtgctacaccaaaacccataaatgaagtttcaagaagtaggagtctgctagaagattacattcggctaagtgagccgactgttcgacctactatcaattgttttgtaagttattatcattcatcgatcccattgtgttagtttgattgaagattgtagttttttttttaaagaagcagtataaagagattgtaatgatacattatatcacaactctgttttttcctaatgttaatctgcctcctgtttttcttcttaaatgcagtcataccgttactatctatcattcttgtggatgaacaacaatttgactagagaagctcttaagatcaagaaggtaaccattcgttatcttttgcctgtataattaggaccctacaatgtgtttcccttctaagatttcttgcgaagcttaaatgagaagagtataagatgccatctatacaaagtatgatttgctagctaggaaaagcttccattatttttttaaaaaagttggctaaatataacaaatccaataatggcgcaaatatgacaatagggaacagtcggcgaatggataagatgcaagacagggctaccctatgttcaagatgtcgcaagcagcatcaagtatcattttgacctcaccacaggaggttaccgggcacttgtgttcaggtgaaatcatcagaggaaaattcatttatctgcttcctgcaggttaaatccatattccatgtcttaaaaattattatgacatttatgaatgcagtggtgaccatgatctcatattgccatttctgagcacccaggcatggataagatccttgaacttctccatagttgatgagtggagagcatggcatgtggatggccaggctgcagggttaagccatctgtttctgctcacaaattgtgcatttcaattgatgttttttccatgtttgcctgatctgatattaatattatgtgtcatcttcttttatgcagatttacaattttgtacgccaacaacttgacctttgccacagtaaaggtgttactttttctttcttgaccttttctcgttaaactggtatttgtgtctatagtgtccagcccttcacaattcacatactggctttctgaagaatcctaaacaaggtttatgatgtgcagggtggtggccatacctctatagaaaccaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcctctgtgatgttcacctgctttgacccaacctgtatactcgtgcaactggtattgtttgtatgaagaactactttatctcccatgttttccaacaacgaatagaagacaagataaatactccgccaaatagagggtccagtactgaccaaattgaaaaatggagagaaaaaaaatcctgatcagttgtagaagtactagctcgggttgctactacaactttgggatgcaaaatgcaaatgcacccggtcaaaccactttgaccacacgaggtttttacccact
More
|
||||||||||
| CDS seq | atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctcttcctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccggtacaggccctgtgatcctctggttgacaggcgggcctggctgctccggattcagcggtgtcgtctttgaagtaggacctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcagtattcatggacacagatggcaagcatcctcttcttggacactcctgttggttctggtttctcatacgctcatgatcctaaaggttataatgtcggggacatatcatcgtctttgcaagtcgtaacatttctgaagaagtggttcaatgatcacccacgctatctctcaaatcatttctatgttggaggaagctcatacgctggaaagttacaggggtatatagttggcaaccccattacaggctcgaagattgatgataatttcaaaattccatattctcatggtgttgggatcatatctgatcaattatacgaggctgcagtagcaaactgcaatggagattatgtgaccacaacaaatgaattatgtgctaaggccctaaatgctattgataatctcatgtctgaagttgattatggaaatatcttggatgataaatgtgttcgtgctacaccaaaacccataaatgaagtttcaagaagtaggagtctgctagaagattacattcggctaagtgagccgacttcataccgttactatctatcattcttgtggatgaacaacaatttgactagagaagctcttaagatcaagaagggaacagtcggcgaatggataagatgcaagacagggctaccctatgttcaagatgtcgcaagcagcatcaagtatcattttgacctcaccacaggaggttaccgggcacttgtgttcagtggtgaccatgatctcatattgccatttctgagcacccaggcatggataagatccttgaacttctccatagttgatgagtggagagcatggcatgtggatggccaggctgcaggatttacaattttgtacgccaacaacttgacctttgccacagtaaagggtggtggccatacctctatagaaaccaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcctctgtga
More
|
||||||||||
| Protein seq | MVLELLTMAAHRVGRCMLLQPPRLATCVLFLLLPLLLPCSASSSVITHLPGFHGRLPFHLETGTGPVILWLTGGPGCSGFSGVVFEVGPMKYVLEPYNGSLPRLVYNQYSWTQMASILFLDTPVGSGFSYAHDPKGYNVGDISSSLQVVTFLKKWFNDHPRYLSNHFYVGGSSYAGKLQGYIVGNPITGSKIDDNFKIPYSHGVGIISDQLYEAAVANCNGDYVTTTNELCAKALNAIDNLMSEVDYGNILDDKCVRATPKPINEVSRSRSLLEDYIRLSEPTSYRYYLSFLWMNNNLTREALKIKKGTVGEWIRCKTGLPYVQDVASSIKYHFDLTTGGYRALVFSGDHDLILPFLSTQAWIRSLNFSIVDEWRAWHVDGQAAGFTILYANNLTFATVKGGGHTSIETNPKQGFAMGKRWLDNKPL |
||||||||||
| Function | Serine carboxypeptidase-like 18 [UniProtKB/Swiss-Prot:Q9C7Z9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032730 | OsNaBo_03g0032730.02 | Chr03 | 32292609 | 32299022 | + | NAM | ||
| CDS seq | atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctcttcctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccggtacaggccctgtgatcctctggttgacaggcgggcctggctgctccggattcagcggtgtcgtctttgaagtaggacctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcagtattcatggacacagatggcaagcatcctcttcttggacactcctgttggttctggtttctcatacgctcatgatcctaaaggttataatgtcggggacatatcatcgtctttgcaagtcgtaacatttctgaagaagtggttcaatgatcacccacgctatctctcaaatcatttctatgttggaggaagctcatacgctggaaagttacaggggtatatagttggcaaccccattacaggctcgaagattgatgataatttcaaaattccatattctcatggtgttgggatcatatctgatcaattatacgaggctgcagtagcaaactgcaatggagattatgtgaccacaacaaatgaattatgtgctaaggccctaaatgctattgataatctcatgtctgaagttgattatggaaatatcttggatgataaatgtgttcgtgctacaccaaaacccataaatgaagtttcaagaagtaggagtctgctagaagattacattcggctaagtgagccgacttcataccgttactatctatcattcttgtggatgaacaacaatttgactagagaagctcttaagatcaagaagggaacagtcggcgaatggataagatgcaagacagggctaccctatgttcaagatgtcgcaagcagcatcaagtatcattttgacctcaccacaggaggttaccgggcacttgtgttcagtggtgaccatgatctcatattgccatttctgagcacccaggcatggataagatccttgaacttctccatagttgatgagtggagagcatggcatgtggatggccaggctgcaggatttacaattttgtacgccaacaacttgacctttgccacagtaaaggtgttactttttctttcttga
More
|
|||||||
| Protein seq | MVLELLTMAAHRVGRCMLLQPPRLATCVLFLLLPLLLPCSASSSVITHLPGFHGRLPFHLETGTGPVILWLTGGPGCSGFSGVVFEVGPMKYVLEPYNGSLPRLVYNQYSWTQMASILFLDTPVGSGFSYAHDPKGYNVGDISSSLQVVTFLKKWFNDHPRYLSNHFYVGGSSYAGKLQGYIVGNPITGSKIDDNFKIPYSHGVGIISDQLYEAAVANCNGDYVTTTNELCAKALNAIDNLMSEVDYGNILDDKCVRATPKPINEVSRSRSLLEDYIRLSEPTSYRYYLSFLWMNNNLTREALKIKKGTVGEWIRCKTGLPYVQDVASSIKYHFDLTTGGYRALVFSGDHDLILPFLSTQAWIRSLNFSIVDEWRAWHVDGQAAGFTILYANNLTFATVKVLLFLS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032730 | OsNaBo_03g0032730.01 | Chr03 | 32292609 | 32299022 | + | NAM | ||
| CDS seq | atggtcttggagcttctcacaatggctgctcaccgcgtggggcgatgcatgctcctgcaaccaccgcgcctcgccacctgcgtcctcttcctcctgctaccgctgctgctgccgtgctcggcgtcgtcgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccggtacaggccctgtgatcctctggttgacaggcgggcctggctgctccggattcagcggtgtcgtctttgaagtaggacctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcagtattcatggacacagatggcaagcatcctcttcttggacactcctgttggttctggtttctcatacgctcatgatcctaaaggttataatgtcggggacatatcatcgtctttgcaagtcgtaacatttctgaagaagtggttcaatgatcacccacgctatctctcaaatcatttctatgttggaggaagctcatacgctggaaagttacaggggtatatagttggcaaccccattacaggctcgaagattgatgataatttcaaaattccatattctcatggtgttgggatcatatctgatcaattatacgaggctgcagtagcaaactgcaatggagattatgtgaccacaacaaatgaattatgtgctaaggccctaaatgctattgataatctcatgtctgaagttgattatggaaatatcttggatgataaatgtgttcgtgctacaccaaaacccataaatgaagtttcaagaagtaggagtctgctagaagattacattcggctaagtgagccgacttcataccgttactatctatcattcttgtggatgaacaacaatttgactagagaagctcttaagatcaagaagggaacagtcggcgaatggataagatgcaagacagggctaccctatgttcaagatgtcgcaagcagcatcaagtatcattttgacctcaccacaggaggttaccgggcacttgtgttcagtggtgaccatgatctcatattgccatttctgagcacccaggcatggataagatccttgaacttctccatagttgatgagtggagagcatggcatgtggatggccaggctgcaggatttacaattttgtacgccaacaacttgacctttgccacagtaaagggtggtggccatacctctatagaaaccaatcctaaacaaggttttgccatgggcaaacgttggctagataataagcctctgtga
More
|
|||||||
| Protein seq | MVLELLTMAAHRVGRCMLLQPPRLATCVLFLLLPLLLPCSASSSVITHLPGFHGRLPFHLETGTGPVILWLTGGPGCSGFSGVVFEVGPMKYVLEPYNGSLPRLVYNQYSWTQMASILFLDTPVGSGFSYAHDPKGYNVGDISSSLQVVTFLKKWFNDHPRYLSNHFYVGGSSYAGKLQGYIVGNPITGSKIDDNFKIPYSHGVGIISDQLYEAAVANCNGDYVTTTNELCAKALNAIDNLMSEVDYGNILDDKCVRATPKPINEVSRSRSLLEDYIRLSEPTSYRYYLSFLWMNNNLTREALKIKKGTVGEWIRCKTGLPYVQDVASSIKYHFDLTTGGYRALVFSGDHDLILPFLSTQAWIRSLNFSIVDEWRAWHVDGQAAGFTILYANNLTFATVKGGGHTSIETNPKQGFAMGKRWLDNKPL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032730 | OsNaBo_03g0032730.03 | Chr03 | 32292478 | 32298864 | + | IsoSeq | ||
| CDS seq | atggcattctgtatccttcaaacaactagtgacctttgcatagttaataatgtggcatcatgtttcttatattctttttggtgcttatatatgaaatcagttacaggggtatatagttggcaaccccattacaggctcgaa |
|||||||
| Protein seq | MAFCILQTTSDLCIVNNVASCFLYSFWCLYMKSVTGVYSWQPHYRLE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 32292796 | 32294926 | + | OsNaBo_03g0032730.03 | OsNaBo_03g0032730.01,OsNaBo_03g0032730.03,OsNaBo_03g0032730.02 | All |
| RI | Chr03 | 32298496 | 32299022 | + | OsNaBo_03g0032730.02 | OsNaBo_03g0032730.01,OsNaBo_03g0032730.02 | All |
| A5 | Chr03 | 32297604 | 32297789 | + | OsNaBo_03g0032730.03 | OsNaBo_03g0032730.01,OsNaBo_03g0032730.03,OsNaBo_03g0032730.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.395599 | 36.973579 | 21.343933 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0730400 | RBH | 0.000000 | 0.135461 | 4.649220 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52040 | RBH | 0.000000 | 0.110022 | 1.170091 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0730400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033460 | RBH | 0.0 | 26.226118 | 2.756449 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033160 | RBH | 0.061128 | 5.233663 | 2.898850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033230 | RBH | 0.0 | 33.996284 | 5.481895 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033550 | RBH | 0.0 | 0.558627 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033160 | RBH | 4.530792 | 29.704414 | 38.734978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0509800 | RBH | 15.8599995 | 12.9050995 | 4.584564 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032910 | SBH | 0.000000 | 0.657357 | 1.215913 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0510800 | RBH | 8.850739 | 7.067128 | 4.8354455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033390 | RBH | 0.059732 | 0.035467 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033380 | RBH | 0.000000 | 20.078350 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033160 | RBH | 0.618060 | 47.915791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033100 | RBH | 0.642138 | 0.515224 | 0.785306 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033120 | RBH | 0.035713 | 4.295040 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032890 | RBH | 0.000000 | 2.657251 | 5.664279 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032740 | RBH | 0.0 | 0.000000 | 0.168034 |
