Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0012970 | OGI:03026160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:9992117-9995323 | ||||||||
| Gene Symbol | OsCrRLK1L7 | ||||||||||
| DNA seq | gcccaactaatcaaatacccatatgctaaACacaagcttgatcaaacaccccccatctcaaccaacaacaaaacaagttcttattccacaagcccttTCAtcactacaaagcctacaaaactcgagtattatcttcatccatccctaatccaaccaggcacaggctcagttctcctgttggtagcagttgccttccctgttcctagcttcacatcgtcgtcgtcaagctgcaggtttctgaacaagagatcgtcacccatgcggccatggtggggcaacctactctgatcaGcttggctctggttctattctagcctagagcgcgttgatcaatcgccgatgctctggcggccggagttcttgcgccatggcaaccgttcttgagatgctcgtgcagctcgccgtcgttgtcacggtgctatgcgccgccgtgcgagcgtacaCcccggcggacagctacctcttcctctgcggcacgtccgggaacgccaccgtcgatggccggacgttcgtcggggacgctggtctgccggcctcggtgctgatggcgccccagagcaccgaggccaacatGccggcgaaccaggtcactggcgccggcgacgactcgccggcgctgtaccagtcagcgcgcgtgttcacggcgccggccaactacgcgttctccgctaagcctggccgccacttcgtccgcctccgcttcttccccttccggtaccagtcttacgaCctcgccgcggacgcggcgttcaatgtgtccgtgcagggcgtggtgttcgtcgacgggtacacGcccaagaacggcacggccgtggtcagggagttctccgtgaacatcaccggtagggcgctggtgatcgcgttcacgccgacgggcaagaaggtggcgttcgtcaacgccatcgaggtggtgtcccatcccgacgagctcatcggcgacacCGcgccgatggtgaatccgcggaaccagtcccagtacaccgggttgacggcgaaggcgctggagacggtgcaccggatcaacatgggagagcccaaggtcacgccgaacaacgacacgctgtggaggacatggctgccggactggaccttcctgcacgagagcagcttcgcggcgcacaatcaagtgtctccggcgatgatcaagtaccaaagtggctacgcgacctcgctgacggcgccctccgcggtgtacaccaccgtgacggagttgaacacgacggcggcgatggtcggcaacacgcaggcgcagctcaacctgacgtggaagttcaacgcaccggccgtctcggactacctcctccggctccacttgtgcgacatcgtcagcaaggcgacgctcggtgtggtgttcaatgtctacgtcggccagtggcgggttctccAagactacgagtcttccggcgacacgttcagccttcttgccacgccgctctataaggacttcgtccttgccgccagtgatgcggcgaagggtacaatcacggtgagcatcgggtcatcgacggcaaccaacgcgttgcccggcggcttcctgaacggcctcgagatcatgagaattgtcgggagcaccggctccatcgacggcgccacgtcgccGcgcggctcaaagatcaagaccgggatcatcgccggatcggccgtgggcGgggcggtgttggcgattgctctcgggtgcgtcgccgtcaggatgctgcggaGgaagaagaagccggtgaagcagccgtcgaacacctgggtgccgttctcggcgagcgcgctgggcgcccgctctcgcaccagcttcggcaggagcagcatcgtcaacgtcgtcacgctggggcagaacggcgccggcgccggcgccgggtaccgcttcccgttcgcggcgctgcaggaggcgacgggcgggttcgaggaggagatggtgatcggcgtgggcgggttcgggaaggtgtacaggggcacgctccgggacggcacgcaggtggccgtgaagcgcgggaaccggctgtcgcagcaggggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctcgtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtacgagtacatggcgaagggcacgctccggagccacctgtacggctccgacctgccgccgctgccgtggaagcagaggctggaggcgtgcatcggggccgcgagggggctgcactacctgcacaccggctcggccaaggcgatcatccaccGggacgtcaagtcggccaacatcctcctcgacgacggcttcatggccaaggtcgccgacttcgggctgtccaagaccgggccggagctggacaagacgcacgtcagcaccgccgtcaagggcagcttcgggtacctcgacccggagtacttccggcggcagatgctgacggagaagtccgacgtctactccttcggcgtcgtcctgctcgaggtgctctgcgcccgcgccgtcatcgacccgacgctgccccgggagatggtgaacctggcggagtgggcgacgcggcggctcagggacggcgagctcgaccggatcgtggaccagaaaattgccgggacgatacggccggactcgctcaagaagttcgccgacaccgccgagaagtgcctcgcggagtacggcgtggagcggccgagcatgggggacgtgctctggtgcctcgagtacgcgctgcagctgcaggtggcgtcgccggacagctctgtcacgacgcttcagcgcagctcgtcgatctcaagcgtcgtgacagacgccaccgtgagtgcgaacctgggggacctcgacggcatgtccatgaagagAGTATtctcaaagatgctcaagagcgaggaagagggcaggtgaaggattgaagcaagaaatgttctagtatactagcatctggtacacaataggattgcgtatatctcaattttgatcttatatgcatgtaaatttcaacaaatgatgtacaTTTtttttttgcatgtaggagaaagatgcactaaactgcatTAtggtacagtgataggataccacagttggcaatgtaggagtatatcacgccagtaaacacaatgcaaatgcaaagcaacacaccagtaataacgagtatatattctcacgaataaacgaacaaaataggcagaatcttgtctgaacaacttagaatccagagactgcag
More
|
||||||||||
| CDS seq | atggcaaccgttcttgagatgctcgtgcagctcgccgtcgttgtcacggtgctatgcgccgccgtgcgagcgtacaCcccggcggacagctacctcttcctctgcggcacgtccgggaacgccaccgtcgatggccggacgttcgtcggggacgctggtctgccggcctcggtgctgatggcgccccagagcaccgaggccaacatGccggcgaaccaggtcactggcgccggcgacgactcgccggcgctgtaccagtcagcgcgcgtgttcacggcgccggccaactacgcgttctccgctaagcctggccgccacttcgtccgcctccgcttcttccccttccggtaccagtcttacgaCctcgccgcggacgcggcgttcaatgtgtccgtgcagggcgtggtgttcgtcgacgggtacacGcccaagaacggcacggccgtggtcagggagttctccgtgaacatcaccggtagggcgctggtgatcgcgttcacgccgacgggcaagaaggtggcgttcgtcaacgccatcgaggtggtgtcccatcccgacgagctcatcggcgacacCGcgccgatggtgaatccgcggaaccagtcccagtacaccgggttgacggcgaaggcgctggagacggtgcaccggatcaacatgggagagcccaaggtcacgccgaacaacgacacgctgtggaggacatggctgccggactggaccttcctgcacgagagcagcttcgcggcgcacaatcaagtgtctccggcgatgatcaagtaccaaagtggctacgcgacctcgctgacggcgccctccgcggtgtacaccaccgtgacggagttgaacacgacggcggcgatggtcggcaacacgcaggcgcagctcaacctgacgtggaagttcaacgcaccggccgtctcggactacctcctccggctccacttgtgcgacatcgtcagcaaggcgacgctcggtgtggtgttcaatgtctacgtcggccagtggcgggttctccAagactacgagtcttccggcgacacgttcagccttcttgccacgccgctctataaggacttcgtccttgccgccagtgatgcggcgaagggtacaatcacggtgagcatcgggtcatcgacggcaaccaacgcgttgcccggcggcttcctgaacggcctcgagatcatgagaattgtcgggagcaccggctccatcgacggcgccacgtcgccGcgcggctcaaagatcaagaccgggatcatcgccggatcggccgtgggcGgggcggtgttggcgattgctctcgggtgcgtcgccgtcaggatgctgcggaGgaagaagaagccggtgaagcagccgtcgaacacctgggtgccgttctcggcgagcgcgctgggcgcccgctctcgcaccagcttcggcaggagcagcatcgtcaacgtcgtcacgctggggcagaacggcgccggcgccggcgccgggtaccgcttcccgttcgcggcgctgcaggaggcgacgggcgggttcgaggaggagatggtgatcggcgtgggcgggttcgggaaggtgtacaggggcacgctccgggacggcacgcaggtggccgtgaagcgcgggaaccggctgtcgcagcaggggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctcgtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtacgagtacatggcgaagggcacgctccggagccacctgtacggctccgacctgccgccgctgccgtggaagcagaggctggaggcgtgcatcggggccgcgagggggctgcactacctgcacaccggctcggccaaggcgatcatccaccGggacgtcaagtcggccaacatcctcctcgacgacggcttcatggccaaggtcgccgacttcgggctgtccaagaccgggccggagctggacaagacgcacgtcagcaccgccgtcaagggcagcttcgggtacctcgacccggagtacttccggcggcagatgctgacggagaagtccgacgtctactccttcggcgtcgtcctgctcgaggtgctctgcgcccgcgccgtcatcgacccgacgctgccccgggagatggtgaacctggcggagtgggcgacgcggcggctcagggacggcgagctcgaccggatcgtggaccagaaaattgccgggacgatacggccggactcgctcaagaagttcgccgacaccgccgagaagtgcctcgcggagtacggcgtggagcggccgagcatgggggacgtgctctggtgcctcgagtacgcgctgcagctgcaggtggcgtcgccggacagctctgtcacgacgcttcagcgcagctcgtcgatctcaagcgtcgtgacagacgccaccgtgagtgcgaacctgggggacctcgacggcatgtccatgaagagAGTATtctcaaagatgctcaagagcgaggaagagggcaggagaaagatgcactaa
More
|
||||||||||
| Protein seq | MATVLEMLVQLAVVVTVLCAAVRAYTPADSYLFLCGTSGNATVDGRTFVGDAGLPASVLMAPQSTEANMPANQVTGAGDDSPALYQSARVFTAPANYAFSAKPGRHFVRLRFFPFRYQSYDLAADAAFNVSVQGVVFVDGYTPKNGTAVVREFSVNITGRALVIAFTPTGKKVAFVNAIEVVSHPDELIGDTAPMVNPRNQSQYTGLTAKALETVHRINMGEPKVTPNNDTLWRTWLPDWTFLHESSFAAHNQVSPAMIKYQSGYATSLTAPSAVYTTVTELNTTAAMVGNTQAQLNLTWKFNAPAVSDYLLRLHLCDIVSKATLGVVFNVYVGQWRVLQDYESSGDTFSLLATPLYKDFVLAASDAAKGTITVSIGSSTATNALPGGFLNGLEIMRIVGSTGSIDGATSPRGSKIKTGIIAGSAVGGAVLAIALGCVAVRMLRRKKKPVKQPSNTWVPFSASALGARSRTSFGRSSIVNVVTLGQNGAGAGAGYRFPFAALQEATGGFEEEMVIGVGGFGKVYRGTLRDGTQVAVKRGNRLSQQGLNEFRTEIELLSQLRHRHLVSLIGYCDERGEMILVYEYMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDDGFMAKVADFGLSKTGPELDKTHVSTAVKGSFGYLDPEYFRRQMLTEKSDVYSFGVVLLEVLCARAVIDPTLPREMVNLAEWATRRLRDGELDRIVDQKIAGTIRPDSLKKFADTAEKCLAEYGVERPSMGDVLWCLEYALQLQVASPDSSVTTLQRSSSISSVVTDATVSANLGDLDGMSMKRVFSKMLKSEEEGRRKMH |
||||||||||
| Function | Receptor-like protein kinase HERK 1 [UniProtKB/Swiss-Prot:Q9LX66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012970 | OsLima_03g0012970.01 | Chr03 | 9992117 | 9995323 | + | NAM | ||
| CDS seq | atggcaaccgttcttgagatgctcgtgcagctcgccgtcgttgtcacggtgctatgcgccgccgtgcgagcgtacaCcccggcggacagctacctcttcctctgcggcacgtccgggaacgccaccgtcgatggccggacgttcgtcggggacgctggtctgccggcctcggtgctgatggcgccccagagcaccgaggccaacatGccggcgaaccaggtcactggcgccggcgacgactcgccggcgctgtaccagtcagcgcgcgtgttcacggcgccggccaactacgcgttctccgctaagcctggccgccacttcgtccgcctccgcttcttccccttccggtaccagtcttacgaCctcgccgcggacgcggcgttcaatgtgtccgtgcagggcgtggtgttcgtcgacgggtacacGcccaagaacggcacggccgtggtcagggagttctccgtgaacatcaccggtagggcgctggtgatcgcgttcacgccgacgggcaagaaggtggcgttcgtcaacgccatcgaggtggtgtcccatcccgacgagctcatcggcgacacCGcgccgatggtgaatccgcggaaccagtcccagtacaccgggttgacggcgaaggcgctggagacggtgcaccggatcaacatgggagagcccaaggtcacgccgaacaacgacacgctgtggaggacatggctgccggactggaccttcctgcacgagagcagcttcgcggcgcacaatcaagtgtctccggcgatgatcaagtaccaaagtggctacgcgacctcgctgacggcgccctccgcggtgtacaccaccgtgacggagttgaacacgacggcggcgatggtcggcaacacgcaggcgcagctcaacctgacgtggaagttcaacgcaccggccgtctcggactacctcctccggctccacttgtgcgacatcgtcagcaaggcgacgctcggtgtggtgttcaatgtctacgtcggccagtggcgggttctccAagactacgagtcttccggcgacacgttcagccttcttgccacgccgctctataaggacttcgtccttgccgccagtgatgcggcgaagggtacaatcacggtgagcatcgggtcatcgacggcaaccaacgcgttgcccggcggcttcctgaacggcctcgagatcatgagaattgtcgggagcaccggctccatcgacggcgccacgtcgccGcgcggctcaaagatcaagaccgggatcatcgccggatcggccgtgggcGgggcggtgttggcgattgctctcgggtgcgtcgccgtcaggatgctgcggaGgaagaagaagccggtgaagcagccgtcgaacacctgggtgccgttctcggcgagcgcgctgggcgcccgctctcgcaccagcttcggcaggagcagcatcgtcaacgtcgtcacgctggggcagaacggcgccggcgccggcgccgggtaccgcttcccgttcgcggcgctgcaggaggcgacgggcgggttcgaggaggagatggtgatcggcgtgggcgggttcgggaaggtgtacaggggcacgctccgggacggcacgcaggtggccgtgaagcgcgggaaccggctgtcgcagcaggggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctcgtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtacgagtacatggcgaagggcacgctccggagccacctgtacggctccgacctgccgccgctgccgtggaagcagaggctggaggcgtgcatcggggccgcgagggggctgcactacctgcacaccggctcggccaaggcgatcatccaccGggacgtcaagtcggccaacatcctcctcgacgacggcttcatggccaaggtcgccgacttcgggctgtccaagaccgggccggagctggacaagacgcacgtcagcaccgccgtcaagggcagcttcgggtacctcgacccggagtacttccggcggcagatgctgacggagaagtccgacgtctactccttcggcgtcgtcctgctcgaggtgctctgcgcccgcgccgtcatcgacccgacgctgccccgggagatggtgaacctggcggagtgggcgacgcggcggctcagggacggcgagctcgaccggatcgtggaccagaaaattgccgggacgatacggccggactcgctcaagaagttcgccgacaccgccgagaagtgcctcgcggagtacggcgtggagcggccgagcatgggggacgtgctctggtgcctcgagtacgcgctgcagctgcaggtggcgtcgccggacagctctgtcacgacgcttcagcgcagctcgtcgatctcaagcgtcgtgacagacgccaccgtgagtgcgaacctgggggacctcgacggcatgtccatgaagagAGTATtctcaaagatgctcaagagcgaggaagagggcaggagaaagatgcactaa
More
|
|||||||
| Protein seq | MATVLEMLVQLAVVVTVLCAAVRAYTPADSYLFLCGTSGNATVDGRTFVGDAGLPASVLMAPQSTEANMPANQVTGAGDDSPALYQSARVFTAPANYAFSAKPGRHFVRLRFFPFRYQSYDLAADAAFNVSVQGVVFVDGYTPKNGTAVVREFSVNITGRALVIAFTPTGKKVAFVNAIEVVSHPDELIGDTAPMVNPRNQSQYTGLTAKALETVHRINMGEPKVTPNNDTLWRTWLPDWTFLHESSFAAHNQVSPAMIKYQSGYATSLTAPSAVYTTVTELNTTAAMVGNTQAQLNLTWKFNAPAVSDYLLRLHLCDIVSKATLGVVFNVYVGQWRVLQDYESSGDTFSLLATPLYKDFVLAASDAAKGTITVSIGSSTATNALPGGFLNGLEIMRIVGSTGSIDGATSPRGSKIKTGIIAGSAVGGAVLAIALGCVAVRMLRRKKKPVKQPSNTWVPFSASALGARSRTSFGRSSIVNVVTLGQNGAGAGAGYRFPFAALQEATGGFEEEMVIGVGGFGKVYRGTLRDGTQVAVKRGNRLSQQGLNEFRTEIELLSQLRHRHLVSLIGYCDERGEMILVYEYMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDDGFMAKVADFGLSKTGPELDKTHVSTAVKGSFGYLDPEYFRRQMLTEKSDVYSFGVVLLEVLCARAVIDPTLPREMVNLAEWATRRLRDGELDRIVDQKIAGTIRPDSLKKFADTAEKCLAEYGVERPSMGDVLWCLEYALQLQVASPDSSVTTLQRSSSISSVVTDATVSANLGDLDGMSMKRVFSKMLKSEEEGRRKMH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080797 | 0.079005 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0281500 | RBH | 1.209835 | 2.074864 | 2.506224 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17300 | RBH | 0.250737 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0281500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013240 | RBH | 0.314434 | 0.000000 | 1.623985 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013050 | RBH | 0.533063 | 2.308719 | 0.926998 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013070 | RBH | 1.866023 | 6.047142 | 1.874717 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013040 | RBH | 0.158874 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012900 | RBH | 3.384600 | 3.888426 | 6.890939 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0164300 | RBH | 0.0156105 | 0.1929415 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012810 | RBH | 0.501178 | 0.217931 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0165600 | RBH | 0.1102555 | 0.0150935 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003490 | SBH | 0.031351 | 0.016273 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012990 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013050 | RBH | 10.574743 | 1.909349 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012920 | RBH | 0.000000 | 0.143920 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012880 | RBH | 0.070889 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012840 | RBH | 0.243222 | 0.101027 | 0.500830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012690 | RBH | 1.407892 | 6.715055 | 1.975407 |
