Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0028510 | OGI:02077530 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:29278459-29281329 | ||||||||
| Gene Symbol | RDD1, OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64 | ||||||||||
| DNA seq | aaaaaaatgataagagtatcatgcttcagtgcagattctacatgacatgattaaatcacaaaatgagagattgattggtgaatagatcagcagctgtataatatcaccaagttcaccacccttaaaaatctgtgtatcctgctgtgttagccagcccccaagccgataattaaccacacacacatgaacaaacaacaaagaagcaacaccatgaaaccgaaaaaccaaacaaagcaaagagaaacaaaacgccatatgtaacactaatcaccacaagcttattaaccctccttgtctctatctcgtttctctatctccacatgctgctagctgctgaccaccacgcatgcatgcatgagccatgcatggcggcggcgggcaagcagtagcagctcgcaccaccttaccaagaaccgccgccgccgccgccattgctgctgccgttgccgatcatgctgctattccagaaccctggggcctcatggccaccgatgacgccgccgccaccaccttggttcttgccgtggtcgtactgatgatcgccgccgctgttcgcgtcgccagccgcggcgctcaccaccggcttcaggtcctcgaaggggaacagcaacctgcccgccgcgctctcttgcaacccagcgctgcacgcgccgaacaccccggagccgccgcctgcacccgcgccgtgcgtgtccagggagaaaccgagcacggtctgagcttgttgttgctgctgctgctgtggcggcggtggcatgcggaactcgccgagatggaaccccgcggctgcgtactccgccggcatccctagcggcgccatctgcggcagcggaacgtagcagccggtgctcctcagcaactccatcgccgagaacgcgcccacgctgcccctgccaccggcgccgttcgccgccgccaggttgcctccggggttgcacacgctgctgctctccaagctcgggaacgccgtgaactccgaaggctgcagggcgcggccgtggtggtgcgggaacgccaggttgaggtcctgcgcgccctcgtgcatcagcttcgggttcttggccgccagccccacggggaccgagccggacaccgccgcggaggtggaggccgacgcggccgccgacggcaccaccgaggacgacgagcgcttgttcttccgtgagccgccgccaacggggacgttgcggagcgagccgccctccgtccagtagcggcggcacgtcttgcagaagtagcgcggctgctggaggctgtagttgttgtagtagcagaacttggtgttcgtcgagttgcaccgcgggcagttgagcgccttctccttctgcggccgcgcgcggcgctccgtgccagccccagctccggcggcgcccgcgccggcggccgctccagccgccggtggggcgataggccgctgggcgctggccgccgaggacggcggtggcggtggctgatttgagctcccattaggatttggatttgcacccatcagcatctcttccatgggcttcactagccctagcccctggtgattgacacatgtcgttgcactccattagatgttgcaattgcaagtatcaacacaaacctagaactaagttatgcaatactagacaattagcaagaaccaagaagcaagaacatgtagtatatgagagacgaatgggggaagatgaatgagcatgaggtgtgatgtgagctaggatccttatggtgcaacaaagaaccaagcaaatggatacaaagcgagattaaagctagaagagggaaaggtgaaagatagaaataaagcgggaaaaaaaaaagcaaagtaaagatgagagagaaaacacaccaccacacaaaacacacaactttgtttgtgctcttgtagggttgtgtttgtggcgtagcagtactgctgctgctgctactacatcatcctccaagacatggctactcttttgatgcaaggtgtgggcttgaggagagagacgaaagggtgaggggtggagagaaaagccatgaggaaaagagagatgaaaagataaaaaggaaagggaggataagaaagaaagcgaggaacaaaggaaaagaaaagcggtgcgtcgtgtgctcctttcaaggattaaaaggggaaggagaggagggagcaagagaattaaaaggccccaaacaacaacaacaagagccctcagctcgaagccaatggagaagacagaaactaacccacatacacacagagcgagaagaatatggccgatccgtgcatagatctgcacaaagaataaaaggttggccatggcggttcccaagagcaaacaaagccgagagagaatagagatcaccgtatcccaccagaggaaaagcaagcgccaagatcaaggcacaggcagattaaacaagaaggatcgaccaagaaacacccacatcaacaagatccagaagaagagcagaagccaaaatcgacccggccgggcccccggtgagagatcttaattgtagacatgtcgccggtgttgcatgcaccgattcgagaaaggatcgagcgcagatcagccgccgcagcttaattacctgatgccagtgggccgcatccatgcaagaagaatcccaattgctcgatcctcgccaacgatttctcgctatcaacacaaggagaagagagagaggcaaggaggatgaggagctcctggatgtctcgagtagctagctgcaggcacgagtcaaggagaggaggaatgtcttgtggatggcctcaattgaattgctctccctttctatctctctctcttctcatatgtcatgagatagtgggattcttttcccaatatttttatgtctcttggagaggagaggagagaggacggatgtgtgggaggaggaacagca
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| CDS seq | atggatgcggcccactggcatcaggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaatccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgttggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggcgcgcaggacctcaacctggcgttcccgcaccaccacggccgcgccctgcagccttcggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttccgctgccgcagatggcgccgctagggatgccggcggagtacgcagccgcggggttccatctcggcgagttccgcatgccaccgccgccacagcagcagcagcaacaacaagctcagaccgtgctcggtttctccctggacacgcacggcgcgggtgcaggcggcggctccggggtgttcggcgcgtgcagcgctgggttgcaagagagcgcggcgggcaggttgctgttccccttcgaggacctgaagccggtggtgagcgccgcggctggcgacgcgaacagcggcggcgatcatcagtacgaccacggcaagaaccaaggtggtggcggcggcgtcatcggtggccatgaggccccagggttctggaatagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
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| Protein seq | MDAAHWHQGLGLVKPMEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPSEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW |
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| Function | Dof zinc finger protein 2 [UniProtKB/Swiss-Prot:B9F1L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028510 | OsLima_02g0028510.02 | Chr02 | 29278459 | 29280411 | - | NAM | ||
| CDS seq | atggaagagatgctgatgggtgcaaatccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgttggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggcgcgcaggacctcaacctggcgttcccgcaccaccacggccgcgccctgcagccttcggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttccgctgccgcagatggcgccgctagggatgccggcggagtacgcagccgcggggttccatctcggcgagttccgcatgccaccgccgccacagcagcagcagcaacaacaagctcagaccgtgctcggtttctccctggacacgcacggcgcgggtgcaggcggcggctccggggtgttcggcgcgtgcagcgctgggttgcaagagagcgcggcgggcaggttgctgttccccttcgaggacctgaagccggtggtgagcgccgcggctggcgacgcgaacagcggcggcgatcatcagtacgaccacggcaagaaccaaggtggtggcggcggcgtcatcggtggccatgaggccccagggttctggaatagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
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| Protein seq | MEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPSEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028510 | OsLima_02g0028510.01 | Chr02 | 29278459 | 29281329 | - | NAM | ||
| CDS seq | atggatgcggcccactggcatcaggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaatccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgttggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggcgcgcaggacctcaacctggcgttcccgcaccaccacggccgcgccctgcagccttcggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttccgctgccgcagatggcgccgctagggatgccggcggagtacgcagccgcggggttccatctcggcgagttccgcatgccaccgccgccacagcagcagcagcaacaacaagctcagaccgtgctcggtttctccctggacacgcacggcgcgggtgcaggcggcggctccggggtgttcggcgcgtgcagcgctgggttgcaagagagcgcggcgggcaggttgctgttccccttcgaggacctgaagccggtggtgagcgccgcggctggcgacgcgaacagcggcggcgatcatcagtacgaccacggcaagaaccaaggtggtggcggcggcgtcatcggtggccatgaggccccagggttctggaatagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
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| Protein seq | MDAAHWHQGLGLVKPMEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPSEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr02 | 29279983 | 29281329 | - | OsLima_02g0028510.02 | OsLima_02g0028510.01,OsLima_02g0028510.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.051512 | 0.296076 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0673700 | RBH | 0.202685 | 0.554396 | 1.369402 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45200 | RBH | 0.150435 | 0.230157 | 0.279921 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0673700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028700 | RBH | 0.072627 | 5.606575 | 0.375493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028780 | RBH | 0.000000 | 1.083767 | 1.940428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028640 | RBH | 0.228883 | 3.180778 | 2.815284 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028250 | RBH | 0.0 | 0.138736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028370 | RBH | 0.0 | 5.562286 | 2.513437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0444900 | RBH | 2.239528 | 34.2536585 | 5.70636 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028180 | RBH | 0.052675 | 0.536796 | 0.199880 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0473500 | RBH | 3.048302 | 43.033453 | 13.080287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022990 | RBH | 0.069871 | 0.052083 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028220 | RBH | 0.000000 | 12.390618 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028520 | RBH | 0.0 | 27.119858 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028390 | RBH | 0.124713 | 0.970425 | 1.046731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028080 | RBH | 0.0 | 1.282870 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028650 | RBH | 0.0 | 0.724289 | 0.858362 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028430 | RBH | 1.465440 | 66.571632 | 0.733456 |
