Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0028640 | OGI:02077530 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:28010433-28013302 | ||||||||
| Gene Symbol | RDD1, OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64 | ||||||||||
| DNA seq | aaaaaaatgataagagtatcatgcttcagtgcagattctacatgacatgattaaatcacaaaatgagagattgattggtgaatagatcagcagctgtataatatcaccaagttcaccaCccttaaaaatctgtgtatcctgctgtgttagccagcccccaagccgataattaaccacacacacatgaacaaacaacaaagaagcaacaccatgaaaccgaaaaaccaaacaaagcaaagagaaacaaaacgccatatgtaacactaatcaccacaggcttattaaccccccttgtctctatctcgtttctctatctccacatgctgctagctgctgaccaccacgcgtgcatgcatgagccatgcatggcggcggcgggcaagcagtagcagctcgcaccaccttaccaagaaccgccgccgccgccgccattgctgctgccgttgccgatcatgctgctATTCCAGAACCCTGGGGCCTCATGGCCACCGATGACGCCGCCGCCACCACCTTGGTTCTTGCCGTGGTCGTACTGATGATCGCCGCCGCTGTTCGCGTCGCCAGCCGCGGCGCTCACCACCGGCTTCAGGTCCTCGAAGGGGAACAGCAACCTGCCCGCCGCGCTCTCTTGCAACCCAGCGCTGCACGCGCCGAACACCCCGGAGCCGCCGCCTGCACCCGCGCCGTGCGTGTCCAGGGAGAAACCGAGCACGGTCTGAGCTTGTTGCTGCTGCTGCTGCTGTGGCGGCGGTGGCATGCGGAACTCGCCGAGATGGAACCCCGCAGCTGCGTACTCCGCCGGCATCCCTAGCGGCGCCATCTGCGGCAGCGGaacgtagcagccggtgctcctcagcaactccatcgccgagaacgcgcccacgctgcccctgccaccggcgccgttcgccgccgccaggttgcctccggggttgcacacgctgctgctctccaagctcgggaacgccgtgaactccggcggctgcagggcgcggccgtggtggtgcgggaacgctaggttgaggtcctgcgctccctcgtgcatcagcttcgggttcttggccgccagccccacggggaccgagccggacaccgccgcggaggtggaggccgacgcggccgccgacggcaccaccgaggacgacgagcgcttgttcttccgtgagccgccgccgacggggacgttgcggagcgagccgccctccgtccagtagcggcggcacgtcttgcagaagtagcgcggctgctggaggctgtagttgttgtagtagcagaacttggtgttcgtcgagttgcaccgcgGgcagttgagcgccttctccttctgcggCcgcgcgcggcgctccgtgccagccccagctccggcggcgcccgcgccggcggccgctccagccgccggtggggcgataggccgctgggcgctggccgccgaggacggcggtggcggtggctgatttgagctcccattaggatttggaTttgcacccatcagcatctcttccatgggcttcactagccctagcccctggtgattgacacatgtcgttgcactccattagatgttgcaattgcaagtatcaacacaaacctagaactaagttatgcaatactagacaattagcaagaaccaagaagcaagaacatgtagtatatgagagacgaatgggggaagatgaatgagcatgaggtgtgatgtgagctaggatccttatggtgcaacaaagaaccaagcaaatggatacaaagcgagattaaagctagaagagggaaaggtgaaagatagaaataaagcgggaaaaaaaaAGCaaagtaaagatgagagagaaaaCacaccaccacacaaaacacacaactttgtttgtgctcttgtagggttgtgtttgtggcgtagcagtactgctgctgctgctactacatcatcctccaagacatggctactcttttgatgcaaggtgtgggcttgaggagagagacgaaagggtgaggggtggagagaaaagccatgaggaaaagagagatgaaaagataaaaaggaaagggaggataagaaagaaagcgaggaacaaaggaaaaGAaaagcggtgcgtcgtgtgctcctttcaaggattaaaaggggaaggagaggagggagcaagagaattaaaaggccccaaacaacaacaacaagagccctcagctcgaagccaatggagaagacagaaactaacccacatacacacagagcgagaagaatatggccgatccgtgcatagatctgcacaaagaataaaaggttggccatggcggttcccaagagcaaacaaagccgagagagaatagagatcaccgtatcccaccagaggaaaagcaagcgccaagatcaaggcacaggcagattaaacaagaaggatcgaccaagaaacacccacatcaacaagatccagaagaagagcagaagccaaaatcgacccggccgggCccccggtgagagatcttaattgtagacatgtcgccggtgttgcatgcaccgattcgagaaaggatcgagcgcagatcagccgccgcagcttaattacctgatgccagtgggccgcatccatgcaagaagaatcccaattgctcgatcctcgccaacgatttctcgctatcaacacaaggagaagagagagaggcaaggaggatgaggagctcctggatgtctcgagtagctagctgcaggcacgagtcaaggagaggaggaatgtcttgtggatggcctcaattgaattgctctCcctttctatctctctctcTtctcatatgtcatgagatagtgggattCttttcccaatatttttatgtctcttggagaggagaggagagaggacggatgtgagggaggaggaacagca
More
|
||||||||||
| CDS seq | atggatgcggcccactggcatcaggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaAtccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcgGccgcagaaggagaaggcgctcaactgcCcgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggagcgcaggacctcaacctagcgttcccgcaccaccacggccgcgccctgcagccgccggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttCCGCTGCCGCAGATGGCGCCGCTAGGGATGCCGGCGGAGTACGCAGCTGCGGGGTTCCATCTCGGCGAGTTCCGCATGCCACCGCCGCCACAGCAGCAGCAGCAGCAACAAGCTCAGACCGTGCTCGGTTTCTCCCTGGACACGCACGGCGCGGGTGCAGGCGGCGGCTCCGGGGTGTTCGGCGCGTGCAGCGCTGGGTTGCAAGAGAGCGCGGCGGGCAGGTTGCTGTTCCCCTTCGAGGACCTGAAGCCGGTGGTGAGCGCCGCGGCTGGCGACGCGAACAGCGGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGTGGCGGCGGCGTCATCGGTGGCCATGAGGCCCCAGGGTTCTGGAATagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
More
|
||||||||||
| Protein seq | MDAAHWHQGLGLVKPMEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPPEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW |
||||||||||
| Function | Dof zinc finger protein 2 [UniProtKB/Swiss-Prot:B9F1L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0028640 | OsCMeo_02g0028640.01 | Chr02 | 28010433 | 28013302 | - | NAM | ||
| CDS seq | atggatgcggcccactggcatcaggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaAtccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcgGccgcagaaggagaaggcgctcaactgcCcgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggagcgcaggacctcaacctagcgttcccgcaccaccacggccgcgccctgcagccgccggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttCCGCTGCCGCAGATGGCGCCGCTAGGGATGCCGGCGGAGTACGCAGCTGCGGGGTTCCATCTCGGCGAGTTCCGCATGCCACCGCCGCCACAGCAGCAGCAGCAGCAACAAGCTCAGACCGTGCTCGGTTTCTCCCTGGACACGCACGGCGCGGGTGCAGGCGGCGGCTCCGGGGTGTTCGGCGCGTGCAGCGCTGGGTTGCAAGAGAGCGCGGCGGGCAGGTTGCTGTTCCCCTTCGAGGACCTGAAGCCGGTGGTGAGCGCCGCGGCTGGCGACGCGAACAGCGGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGTGGCGGCGGCGTCATCGGTGGCCATGAGGCCCCAGGGTTCTGGAATagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
More
|
|||||||
| Protein seq | MDAAHWHQGLGLVKPMEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPPEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0028640 | OsCMeo_02g0028640.02 | Chr02 | 28010433 | 28012384 | - | NAM | ||
| CDS seq | atggaagagatgctgatgggtgcaaAtccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcgGccgcagaaggagaaggcgctcaactgcCcgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggagcgcaggacctcaacctagcgttcccgcaccaccacggccgcgccctgcagccgccggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttCCGCTGCCGCAGATGGCGCCGCTAGGGATGCCGGCGGAGTACGCAGCTGCGGGGTTCCATCTCGGCGAGTTCCGCATGCCACCGCCGCCACAGCAGCAGCAGCAGCAACAAGCTCAGACCGTGCTCGGTTTCTCCCTGGACACGCACGGCGCGGGTGCAGGCGGCGGCTCCGGGGTGTTCGGCGCGTGCAGCGCTGGGTTGCAAGAGAGCGCGGCGGGCAGGTTGCTGTTCCCCTTCGAGGACCTGAAGCCGGTGGTGAGCGCCGCGGCTGGCGACGCGAACAGCGGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGTGGCGGCGGCGTCATCGGTGGCCATGAGGCCCCAGGGTTCTGGAATagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttgg
More
|
|||||||
| Protein seq | MEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAPPAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPPEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLGFSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQYDHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr02 | 28011957 | 28013302 | - | OsCMeo_02g0028640.02 | OsCMeo_02g0028640.01,OsCMeo_02g0028640.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.228883 | 3.180778 | 2.815284 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0673700 | RBH | 0.202685 | 0.554396 | 1.369402 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45200 | RBH | 0.150435 | 0.230157 | 0.279921 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0673700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028700 | RBH | 0.072627 | 5.606575 | 0.375493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028780 | RBH | 0.000000 | 1.083767 | 1.940428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023830 | RBH | 0.0 | 5.122846 | 3.046533 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028250 | RBH | 0.0 | 0.138736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028370 | RBH | 0.0 | 5.562286 | 2.513437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0444900 | RBH | 2.239528 | 34.2536585 | 5.70636 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028180 | RBH | 0.052675 | 0.536796 | 0.199880 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0473500 | RBH | 3.048302 | 43.033453 | 13.080287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0028510 | RBH | 0.051512 | 0.296076 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028220 | RBH | 0.000000 | 12.390618 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028520 | RBH | 0.0 | 27.119858 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028390 | RBH | 0.124713 | 0.970425 | 1.046731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028080 | RBH | 0.0 | 1.282870 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028650 | RBH | 0.0 | 0.724289 | 0.858362 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028430 | RBH | 1.465440 | 66.571632 | 0.733456 |
