Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0009400 | OGI:02020360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:7070451-7073522 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccaacaaacggtatgcaagcttcttcctgttctttatgatgccattttctctcctgcacaaatcgtacccgcaattggtgaatcaatctagtgatgaacaccaaatcctccttgagctgaagaaacactgggggagctcacctgttttaggtagatggagctccgattctgctgctcactgcaactggggaggaatcacatgcacaaatggtgtggtcaccggcatctctctaccaaatcaaaccttcatcaaaccaattcctccctccatttgcctcctcaagaacctcacccacttggatgtctcctacaacaacatatcctctccattccctacaatgctctacaattgctccaatctcaagtaccttgacctttcgaacaacgcctttgctgggaagctcccaaatgatataaatagtctaccagcgctgctcgagcatctcaacctttcatctaatcacttcactggcagaattccaccatcaattggactgttcccaaggctgaagtcgctgctccttgacaccaatcagtttgatgggaggtacccagctgaggatatcagcaatcttgctgaccttgagaggctgacactagcagtcaatccatttgtcccggctccctttccaacggagtttggtaggttgagacgtctgacttacttgtggctgtcaaatatgaatattaccggtgaaatccctgaaagcctgtccagcctcagagagctcaatctcttggaattgtcattgaacaagctgcaaggaaaaattccaacgtggatctggcaacataagaagcttcagtacttgtaccagtacggaaacaaattcactggtgagattgaatccaacatcacaaccttgaacttggtggagattgatgtttctgcaaatgagttaacaggaacaataccagatggatttggtaagattaccaaccttaccttattgtttctctactttaacaagctgagtggatcaataccaccaagcgttgggctgctgccaaagcttactgacattcggttattcaataacatgctctctggatcgctcccaccagagcttggtaagcactcaccactagccaatcttgagatctccaataataacctctctggggagctaccagaaggcctctgcttcaacaggaagctatatagcattgttgtgttcaataacagcttttctggaaaacttccatcttcattggatggttgctatccgttgcaaaatttgatgttgtacaataataatttttctggagagttccccaggagcctttggtcagtggtgacagatcagttgagtgtagttatgatacagaacaacaacttctctggcacattcccagcccaactgccatggaactttacacgtctcgacatcagcaacaacagattctcaggtcccattccaacgttggcaggcaaaatgaaagtattcagagcagcaaacaacttgctctctggtgaaattccctgggatctgacaggcatttcacaagtcatagagtttgatctttctgggaatcaaattagtggctcactacccacgacaattggagtgctgatgaggctaaatgcactttacctaagtggaaatcagatatctggtaatatcccagcagggtttgggtttattacagggctgaccgacctagacctctcatcgaataagctatctggtgaggtcccgaaggattttaataagctactgctcaattttctgaatctctctatgaaccaactcacaggggaaattccgacatcattgcaaaacaaagcatatgagcagagcttcctattcaacccaggcctctgtgtctcatcgagcaattcactccaaaatttccctatctgcagggcaagagcaaacatcaacaaggatctattcggaaagcatatagccctcatttctgctgttgccagcattgtactcttggtttcggcagtggttggtttcattctcttaagaaggaaaaagcatatacaagatcacttgtcatggaagttaacacccttccacgtattgcatttcacctcaaatgacattctttctgggctctgcgagcagaattggattggaagtggcaggtctggaaaggtgtaccgggtttatgctggacatagaacaagtggtggcatgatggtggctgtcaaaaagatatggaacatgcaaaatattgataacaagctggagaaggacttccttgcagaggttcagatattgggagagatcaggcacacaaacattgtcaagcttctatgctgcatctcaagttcagaggcaaagcttctgatctacgagtacatggaaaacggcagcctacatcaatggcttcaccagagggaaagaattggtgcgccaggacctctggattggccaacaagattgcaaattgccatcgactcagcgagaggcctttgctacatgcatcaccattgctcgcctcccatagtgcatcgagatgtcaagtgtgccaacatccttctggatcacaacttcagagcaaagatggcagattttgggcttgcaaagattcttctcaaagctggagacgacgagtcattttctgctatagctggaacttttggctacatggcaccaggtgatagctgaaaagaacaactttgatgagtatatacttgcatattacctgaaacactaaattgtttacactttgcagaatacggacatcggctcaaggtaaacgagaagatcgatgtctacagctttggtgtggtccttctggaaatcataactggtcgagtggcaaatgatggtggagagtactattgcttggcacaatgggcatggaggcagtaccaagaatatggtttgtcagttgatcttctcgatgaggggatcagagacccaacccatgttgaggacgcattggaggtgtttacacttgctgtgatttgtactggggagcatccttcaatgcggccatcaatgaaagatgtactgaatattcttatccaatttgactgtaaatctacaaggattcagggtagcttgaaacatgctgtctctgatgaaacaacacttcttgaatcctag
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| CDS seq | atggccaacaaacggtatgcaagcttcttcctgttctttatgatgccattttctctcctgcacaaatcgtacccgcaattggtgaatcaatctagtgatgaacaccaaatcctccttgagctgaagaaacactgggggagctcacctgttttaggtagatggagctccgattctgctgctcactgcaactggggaggaatcacatgcacaaatggtgtggtcaccggcatctctctaccaaatcaaaccttcatcaaaccaattcctccctccatttgcctcctcaagaacctcacccacttggatgtctcctacaacaacatatcctctccattccctacaatgctctacaattgctccaatctcaagtaccttgacctttcgaacaacgcctttgctgggaagctcccaaatgatataaatagtctaccagcgctgctcgagcatctcaacctttcatctaatcacttcactggcagaattccaccatcaattggactgttcccaaggctgaagtcgctgctccttgacaccaatcagtttgatgggaggtacccagctgaggatatcagcaatcttgctgaccttgagaggctgacactagcagtcaatccatttgtcccggctccctttccaacggagtttggtaggttgagacgtctgacttacttgtggctgtcaaatatgaatattaccggtgaaatccctgaaagcctgtccagcctcagagagctcaatctcttggaattgtcattgaacaagctgcaaggaaaaattccaacgtggatctggcaacataagaagcttcagtacttgtaccagtacggaaacaaattcactgagcttggtaagcactcaccactagccaatcttgagatctccaataataacctctctggggagctaccagaaggcctctgcttcaacaggaagctatatagcattgttgtgttcaataacagcttttctggaaaacttccatcttcattggatggttgctatccgttgcaaaatttgatgttgtacaataataatttttctggagagttccccaggagcctttggtcagtggtgacagatcagttgagtgtagttatgatacagaacaacaacttctctggcacattcccagcccaactgccatggaactttacacgtctcgacatcagcaacaacagattctcaggtcccattccaacgttggcaggcaaaatgaaagtattcagagcagcaaacaacttgctctctggtgaaattccctgggatctgacaggcatttcacaagtcatagagaaaaagcatatacaagatcacttgtcatggaagttaacacccttccacgtattgcatttcacctcaaatgacattctttctgggctctgcgagcagaattggattggaagtggcaggtctggaaaggtgtaccgggtttatgctggacatagaacaagtggtggcatgatggtggctgtcaaaaagatatggaacatgcaaaatattgataacaagctggagaaggacttccttgcagaggttcagatattgggagagatcaggcacacaaacattgtcaagcttctatgctgcatctcaagttcagaggcaaagcttctgatctacgagtacatggaaaacggcagcctacatcaatggcttcaccagagggaaagaattggtgcgccaggacctctggattggccaacaagattgcaaattgccatcgactcagcgagaggcctttgctacatgcatcaccattgctcgcctcccatagtgcatcgagatgtcaagtgtgccaacatccttctggatcacaacttcagagcaaagatggcagattttgggcttgcaaagattcttctcaaagctggagacgacgagtcattttctgctatagctggaacttttggctacatggcaccagttgatcttctcgatgaggggatcagagacccaacccatgttgaggacgcattggaggtgtttacacttgctgtgatttgtactggggagcatccttcaatgcggccatcaatgaaagatgtactgaatattcttatccaatttgactgtaaatctacaaggattcagggtagcttgaaacatgctgtctctgatgaaacaacacttcttgaatcctag
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| Protein seq | MANKRYASFFLFFMMPFSLLHKSYPQLVNQSSDEHQILLELKKHWGSSPVLGRWSSDSAAHCNWGGITCTNGVVTGISLPNQTFIKPIPPSICLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPALLEHLNLSSNHFTGRIPPSIGLFPRLKSLLLDTNQFDGRYPAEDISNLADLERLTLAVNPFVPAPFPTEFGRLRRLTYLWLSNMNITGEIPESLSSLRELNLLELSLNKLQGKIPTWIWQHKKLQYLYQYGNKFTELGKHSPLANLEISNNNLSGELPEGLCFNRKLYSIVVFNNSFSGKLPSSLDGCYPLQNLMLYNNNFSGEFPRSLWSVVTDQLSVVMIQNNNFSGTFPAQLPWNFTRLDISNNRFSGPIPTLAGKMKVFRAANNLLSGEIPWDLTGISQVIEKKHIQDHLSWKLTPFHVLHFTSNDILSGLCEQNWIGSGRSGKVYRVYAGHRTSGGMMVAVKKIWNMQNIDNKLEKDFLAEVQILGEIRHTNIVKLLCCISSSEAKLLIYEYMENGSLHQWLHQRERIGAPGPLDWPTRLQIAIDSARGLCYMHHHCSPPIVHRDVKCANILLDHNFRAKMADFGLAKILLKAGDDESFSAIAGTFGYMAPVDLLDEGIRDPTHVEDALEVFTLAVICTGEHPSMRPSMKDVLNILIQFDCKSTRIQGSLKHAVSDETTLLES |
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| Function | LRR receptor-like serine/threonine-protein kinase HSL2 [UniProtKB/Swiss-Prot:C0LGX3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0009400 | OsLima_02g0009400.01 | Chr02 | 7070451 | 7073522 | + | NAM | ||
| CDS seq | atggccaacaaacggtatgcaagcttcttcctgttctttatgatgccattttctctcctgcacaaatcgtacccgcaattggtgaatcaatctagtgatgaacaccaaatcctccttgagctgaagaaacactgggggagctcacctgttttaggtagatggagctccgattctgctgctcactgcaactggggaggaatcacatgcacaaatggtgtggtcaccggcatctctctaccaaatcaaaccttcatcaaaccaattcctccctccatttgcctcctcaagaacctcacccacttggatgtctcctacaacaacatatcctctccattccctacaatgctctacaattgctccaatctcaagtaccttgacctttcgaacaacgcctttgctgggaagctcccaaatgatataaatagtctaccagcgctgctcgagcatctcaacctttcatctaatcacttcactggcagaattccaccatcaattggactgttcccaaggctgaagtcgctgctccttgacaccaatcagtttgatgggaggtacccagctgaggatatcagcaatcttgctgaccttgagaggctgacactagcagtcaatccatttgtcccggctccctttccaacggagtttggtaggttgagacgtctgacttacttgtggctgtcaaatatgaatattaccggtgaaatccctgaaagcctgtccagcctcagagagctcaatctcttggaattgtcattgaacaagctgcaaggaaaaattccaacgtggatctggcaacataagaagcttcagtacttgtaccagtacggaaacaaattcactgagcttggtaagcactcaccactagccaatcttgagatctccaataataacctctctggggagctaccagaaggcctctgcttcaacaggaagctatatagcattgttgtgttcaataacagcttttctggaaaacttccatcttcattggatggttgctatccgttgcaaaatttgatgttgtacaataataatttttctggagagttccccaggagcctttggtcagtggtgacagatcagttgagtgtagttatgatacagaacaacaacttctctggcacattcccagcccaactgccatggaactttacacgtctcgacatcagcaacaacagattctcaggtcccattccaacgttggcaggcaaaatgaaagtattcagagcagcaaacaacttgctctctggtgaaattccctgggatctgacaggcatttcacaagtcatagagaaaaagcatatacaagatcacttgtcatggaagttaacacccttccacgtattgcatttcacctcaaatgacattctttctgggctctgcgagcagaattggattggaagtggcaggtctggaaaggtgtaccgggtttatgctggacatagaacaagtggtggcatgatggtggctgtcaaaaagatatggaacatgcaaaatattgataacaagctggagaaggacttccttgcagaggttcagatattgggagagatcaggcacacaaacattgtcaagcttctatgctgcatctcaagttcagaggcaaagcttctgatctacgagtacatggaaaacggcagcctacatcaatggcttcaccagagggaaagaattggtgcgccaggacctctggattggccaacaagattgcaaattgccatcgactcagcgagaggcctttgctacatgcatcaccattgctcgcctcccatagtgcatcgagatgtcaagtgtgccaacatccttctggatcacaacttcagagcaaagatggcagattttgggcttgcaaagattcttctcaaagctggagacgacgagtcattttctgctatagctggaacttttggctacatggcaccagttgatcttctcgatgaggggatcagagacccaacccatgttgaggacgcattggaggtgtttacacttgctgtgatttgtactggggagcatccttcaatgcggccatcaatgaaagatgtactgaatattcttatccaatttgactgtaaatctacaaggattcagggtagcttgaaacatgctgtctctgatgaaacaacacttcttgaatcctag
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| Protein seq | MANKRYASFFLFFMMPFSLLHKSYPQLVNQSSDEHQILLELKKHWGSSPVLGRWSSDSAAHCNWGGITCTNGVVTGISLPNQTFIKPIPPSICLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPALLEHLNLSSNHFTGRIPPSIGLFPRLKSLLLDTNQFDGRYPAEDISNLADLERLTLAVNPFVPAPFPTEFGRLRRLTYLWLSNMNITGEIPESLSSLRELNLLELSLNKLQGKIPTWIWQHKKLQYLYQYGNKFTELGKHSPLANLEISNNNLSGELPEGLCFNRKLYSIVVFNNSFSGKLPSSLDGCYPLQNLMLYNNNFSGEFPRSLWSVVTDQLSVVMIQNNNFSGTFPAQLPWNFTRLDISNNRFSGPIPTLAGKMKVFRAANNLLSGEIPWDLTGISQVIEKKHIQDHLSWKLTPFHVLHFTSNDILSGLCEQNWIGSGRSGKVYRVYAGHRTSGGMMVAVKKIWNMQNIDNKLEKDFLAEVQILGEIRHTNIVKLLCCISSSEAKLLIYEYMENGSLHQWLHQRERIGAPGPLDWPTRLQIAIDSARGLCYMHHHCSPPIVHRDVKCANILLDHNFRAKMADFGLAKILLKAGDDESFSAIAGTFGYMAPVDLLDEGIRDPTHVEDALEVFTLAVICTGEHPSMRPSMKDVLNILIQFDCKSTRIQGSLKHAVSDETTLLES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0227600 | SBH | 0.000000 | 0.0 | 0.394133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12910 | SBH | 0.164886 | 0.396880 | 0.191521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0227600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009250 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009340 | SBH | 0.061919 | 0.000000 | 2.673978 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009000 | RBH | 0.047857 | 0.018573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009140 | RBH | 0.0 | 1.062159 | 2.847494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0120100 | SBH | 0.033817 | 0.273829 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0118200 | SBH | 0.4509785 | 0.7482055 | 2.069717 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009420 | SBH | 0.070812 | 0.101563 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009050 | RBH | 0.085155 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009360 | RBH | 0.115681 | 0.100729 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009280 | RBH | 0.034140 | 0.877182 | 0.343852 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009160 | RBH | 0.0 | 0.0 | 0.0 |
