Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0009000 | OGI:02020430 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:6667763-6670834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCAACAAACGGTACGCAAGCTTCTTCCTGTTCTTTATGATGCCATTTTCTCTCCTGCACAAATCGTACCCGCAGTTGGTGAATCAATCTAGTGATGAACACCAAATCCTCCTTGAGATCAAGAGACACTGGGGGAGCTCACCTGTTTTAGGTAGATGGAGCTCCAATTCTGCTGCTCACTGCAATTGGGGAGGAATCACATGCACAGATGGTGTGGTGACTGGCATCTCTCTACCAAATCAAACCTTCATCAAACCAATTCCTCCCTCCATTTGCCTCCTCAAGAACCTCACCCACTTGGATGTCTCCTACAACAACATATCCTCTCCATTCCCTACAATGCTCTACAATTGCTCCAATCTCAAGTACCTTGACCTTTCGAACAACGCCTTTGCTGGGAAGCTCCCAAATGATATAAATAGTCTACCAGCGCTGCTCGAGCATCTCAACCTTTCATCTAATCACTTCACTGGCAGAATTCCACCATCAATTGGACTGTTCCCAAGGCTGAAGTCGCTGCTCCTTGACACCAATCAGTTTGATGGGAGGTACCCAGCTGAGGATATCAGCAATCTTGCTGACCTTGAGAGGCTGACACTAGCAGTCAATCCATTTGTCCCGGCTCCCTTTCCAATGGAGTTTGGTAGGTTGACACGTCTGACTTACTTGTGGCTGTCAAATATGAATATTACCGGTGAAATCCCTGAAAGCCTATCCAGCCTCAGAGAGCTCAACGTCTTGGACTTATCATCGAACAAGATCCAAGGAAAAATTCCAAGGTGGATCTGGCAACATAAGAAACTTCAGATTCTGTACCTGTATGCAAACAGATTCACCGGTGAGATTGAATCCAACATCACAGCCTTGAACTTGGTGGAGATTGATGTTTCTGCAAATGAGTTAACAGGAACAATACCAGATGGATTTGGTAAGATGACCAACCTTACCTTATTGTTTCTCTACTTTAACAAGCTGAGTGGATCAATACCACCAAGCGTTGGGCTGCTGCCAAAGCTTACTGACATTCGGTTATTCAATAACATGCTCTCTGGATCGCTCCCATCAGAGCTTGGTAAGCACTCACCACTGGCCAATCTTGAGGTCTCCAATAATAACCTCTCTGGGGAGCTACCAGAAGGCCTCTGCTTCAACAGGAAGCTATATAGCATTGTTGTGTTCAATAACAGCTTTTCTGGAAAACTTCCATCTTCATTGGATGGTTGCTATCCGTTGCAAAATTTGATGTTGTACAATAATAATTTTTCTGGAGAGTTCCCCAGGAGCCTTTGGTCAGTGGTGACAGATCAGCTAAGTGTAGTTATGATACAGAACAACAATTTCTCTGGCACATTCCCCAAACAGCTCCCATGGAACTTCACACGTCTTGACATCAGCAACAACAGATTCTCAGGTCCCATTCCAACATTGGCAGGCAAAATGAAAGTATTCAGAGCAGCAAACAACTTGCTCTCTGGTGAAATTCCCTGGGATCTGACAGGCATTTCACAAGTCAGATTGGTTGATCTTTCTGGGAATCAAATTAGTGGCTCACTACCCACGACAATTGGAGTGCTGATGAGGCTAAACACACTTTACCTAAGTGGAAATCAGATATCTGGTAATATCCCAGCAGGGTTTGGGTTTATTACAGGGCTGAACGACCTAGACCTCTCATCGAATAAGCTATCTGGTGAGATCCCGAAGGATTCTAATAAGCTGCTGCTCAGTTTTCTGAATCTCTCTATGAACCAACTCACTGGGGAAATTCCGACATCATTGCAAAACAAAGCATATGAGCAGAGCTTCCTATTCAACCTAGGCCTCTGTGTCTCATCGAGCAATTCACTCCAAAATTTCCCTATCTGCAGGGCAAGAGCAAACATCAACAAGGATCTGTTCGGAAAGCATATAGCCCTCATTTCTGCTGTTGCCAGCATTATACTCTTGGTTTCGGCAGTGGCTGGTTTCATGCTCTTAAGAAGGAAAAAGCATCTACAAGATCACTTGTCATGGAAGTTAACACCCTTCCACGTATTGCATTTCACCGCAAATGACATTCTTTCTGGGCTCTGCGAGCAGAATTGGATTGGAAGTGGCAGGTCTGGCAAGGTGTACCGGGTTTATGCTGGAGATAGAACAAGTGGTGGCAGGATGATGGCTGTCAAAAAGATATGGAACATGCAAAATATTGATAACAAGCTGGAGAAGGACTTCCTTGCAGAGGTTCAGATATTGGGAGAGATCAGGCACACAAACATTGTCAAGCTTCTATGCTGCATCTCAAGTTCAGAGGCAAAGCTTCTGATCTACGAGTACATGGAAAACGGCAGCCTACATCAATGGCTTCACCAGAGGGAAAGAATTGGTGTGCCAGGACCTCTGGATTGGCCAACAAGATTGCAAATTGCCATCGACTCAGCGAGAGGCCTTTGCTACATGCATCACCATTGCTCGCCTCCCATAGTGCATCGAGATGTCAAGTGTGCCAACATCCTTCTGGATCACAACTTCAGAGCAAAGATGGCAGATTTTGGGCTTGCAAAGATTCTTCTCAAAGCTGGAGACGACGAGTCATTTTCTGCTATAGCTGGAACTTTTGGCTACATGGCACCAGGTGATAGCTGAAAAGAACAACTTTGATGAGTATATACTTGCATATTACCTGAAACACTAAATTGTTTACACTTTGCAGAATATGGACATCGGCTCAAGGTAAACGAGAAGATCGATGTCTACAGCTTTGGTGTGGTCCTTCTGGAAATCATAACTGGTCGAGTGGCAAATGATGGTGGAGAGTACTATTGCTTGGCACAATGGGCATGGAGGCAGTACCAAGAATATGGTTTGTCAGTTGATCTTCTCGATGAGGGAATCAGAGACCCAACCCATGTTGAGGACGCATTGGAGGTGTTTACACTTGCTGTGATTTGTACTGGGGAGCATCCTTCAATGCGGCCATCAATGAAAGACGTACTGAATATTCTTATCCAATTTGACCGTAAATCTACAAGGATTCAGGGTAGCTTGAAACATGCTGTCTCTGATGAAACAACACTTCTTGAATCCTAG
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| CDS seq | ATGGCCAACAAACGGTACGCAAGCTTCTTCCTGTTCTTTATGATGCCATTTTCTCTCCTGCACAAATCGTACCCGCAGTTGGTGAATCAATCTAGTGATGAACACCAAATCCTCCTTGAGATCAAGAGACACTGGGGGAGCTCACCTGTTTTAGGTAGATGGAGCTCCAATTCTGCTGCTCACTGCAATTGGGGAGGAATCACATGCACAGATGGTGTGGTGACTGGCATCTCTCTACCAAATCAAACCTTCATCAAACCAATTCCTCCCTCCATTTGCCTCCTCAAGAACCTCACCCACTTGGATGTCTCCTACAACAACATATCCTCTCCATTCCCTACAATGCTCTACAATTGCTCCAATCTCAAGTACCTTGACCTTTCGAACAACGCCTTTGCTGGGAAGCTCCCAAATGATATAAATAGTCTACCAGCGCTGCTCGAGCATCTCAACCTTTCATCTAATCACTTCACTGGCAGAATTCCACCATCAATTGGACTGTTCCCAAGGCTGAAGTCGCTGCTCCTTGACACCAATCAGTTTGATGGGAGGTACCCAGCTGAGGATATCAGCAATCTTGCTGACCTTGAGAGGCTGACACTAGCAGTCAATCCATTTGTCCCGGCTCCCTTTCCAATGGAGTTTGGTAGGTTGACACGTCTGACTTACTTGTGGCTGTCAAATATGAATATTACCGGTGAAATCCCTGAAAGCCTATCCAGCCTCAGAGAGCTCAACGTCTTGGACTTATCATCGAACAAGATCCAAGGAAAAATTCCAAGGTGGATCTGGCAACATAAGAAACTTCAGATTCTGTACCTGTATGCAAACAGATTCACCGGTGAGATTGAATCCAACATCACAGCCTTGAACTTGGTGGAGATTGATGTTTCTGCAAATGAGTTAACAGGAACAATACCAGATGGATTTGGTAAGATGACCAACCTTACCTTATTGTTTCTCTACTTTAACAAGCTGAGTGGATCAATACCACCAAGCGTTGGGCTGCTGCCAAAGCTTACTGACATTCGGTTATTCAATAACATGCTCTCTGGATCGCTCCCATCAGAGCTTGGTAAGCACTCACCACTGGCCAATCTTGAGGTCTCCAATAATAACCTCTCTGGGGAGCTACCAGAAGGCCTCTGCTTCAACAGGAAGCTATATAGCATTGTTGTGTTCAATAACAGCTTTTCTGGAAAACTTCCATCTTCATTGGATGGTTGCTATCCGTTGCAAAATTTGATGTTGTACAATAATAATTTTTCTGGAGAGTTCCCCAGGAGCCTTTGGTCAGTGGTGACAGATCAGCTAAGTGTAGTTATGATACAGAACAACAATTTCTCTGGCACATTCCCCAAACAGCTCCCATGGAACTTCACACGTCTTGACATCAGCAACAACAGATTCTCAGGTCCCATTCCAACATTGGCAGGCAAAATGAAAGTATTCAGAGCAGCAAACAACTTGCTCTCTGTGGCTGGTTTCATGCTCTTAAGAAGGAAAAAGCATCTACAAGATCACTTGTCATGGAAGTTAACACCCTTCCACGTATTGCATTTCACCGCAAATGACATTCTTTCTGGGCTCTGCGAGCAGAATTGGATTGGAAGTGGCAGGTCTGGCAAGGTGTACCGGGTTTATGCTGGAGATAGAACAAGTGGTGGCAGGATGATGGCTGTCAAAAAGATATGGAACATGCAAAATATTGATAACAAGCTGGAGAAGGACTTCCTTGCAGAGGTTCAGATATTGGGAGAGATCAGGCACACAAACATTGTCAAGCTTCTATGCTGCATCTCAAGTTCAGAGGCAAAGCTTCTGATCTACGAGTACATGGAAAACGGCAGCCTACATCAATGGCTTCACCAGAGGGAAAGAATTGGTGTGCCAGGACCTCTGGATTGGCCAACAAGATTGCAAATTGCCATCGACTCAGCGAGAGGCCTTTGCTACATGCATCACCATTGCTCGCCTCCCATAGTGCATCGAGATGTCAAGTGTGCCAACATCCTTCTGGATCACAACTTCAGAGCAAAGATGGCAGATTTTGGGCTTGCAAAGATTCTTCTCAAAGCTGGAGACGACGAGTCATTTTCTGCTATAGCTGGAACTTTTGGCTACATGGCACCAGTTGATCTTCTCGATGAGGGAATCAGAGACCCAACCCATGTTGAGGACGCATTGGAGGTGTTTACACTTGCTGTGATTTGTACTGGGGAGCATCCTTCAATGCGGCCATCAATGAAAGACGTACTGAATATTCTTATCCAATTTGACCGTAAATCTACAAGGATTCAGGGTAGCTTGAAACATGCTGTCTCTGATGAAACAACACTTCTTGAATCCTAG
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| Protein seq | MANKRYASFFLFFMMPFSLLHKSYPQLVNQSSDEHQILLEIKRHWGSSPVLGRWSSNSAAHCNWGGITCTDGVVTGISLPNQTFIKPIPPSICLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPALLEHLNLSSNHFTGRIPPSIGLFPRLKSLLLDTNQFDGRYPAEDISNLADLERLTLAVNPFVPAPFPMEFGRLTRLTYLWLSNMNITGEIPESLSSLRELNVLDLSSNKIQGKIPRWIWQHKKLQILYLYANRFTGEIESNITALNLVEIDVSANELTGTIPDGFGKMTNLTLLFLYFNKLSGSIPPSVGLLPKLTDIRLFNNMLSGSLPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYSIVVFNNSFSGKLPSSLDGCYPLQNLMLYNNNFSGEFPRSLWSVVTDQLSVVMIQNNNFSGTFPKQLPWNFTRLDISNNRFSGPIPTLAGKMKVFRAANNLLSVAGFMLLRRKKHLQDHLSWKLTPFHVLHFTANDILSGLCEQNWIGSGRSGKVYRVYAGDRTSGGRMMAVKKIWNMQNIDNKLEKDFLAEVQILGEIRHTNIVKLLCCISSSEAKLLIYEYMENGSLHQWLHQRERIGVPGPLDWPTRLQIAIDSARGLCYMHHHCSPPIVHRDVKCANILLDHNFRAKMADFGLAKILLKAGDDESFSAIAGTFGYMAPVDLLDEGIRDPTHVEDALEVFTLAVICTGEHPSMRPSMKDVLNILIQFDRKSTRIQGSLKHAVSDETTLLES |
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| Function | Receptor-like protein kinase 5 [UniProtKB/Swiss-Prot:P47735] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0009000 | OsARC_02g0009000.01 | Chr02 | 6667763 | 6670834 | + | NAM | ||
| CDS seq | ATGGCCAACAAACGGTACGCAAGCTTCTTCCTGTTCTTTATGATGCCATTTTCTCTCCTGCACAAATCGTACCCGCAGTTGGTGAATCAATCTAGTGATGAACACCAAATCCTCCTTGAGATCAAGAGACACTGGGGGAGCTCACCTGTTTTAGGTAGATGGAGCTCCAATTCTGCTGCTCACTGCAATTGGGGAGGAATCACATGCACAGATGGTGTGGTGACTGGCATCTCTCTACCAAATCAAACCTTCATCAAACCAATTCCTCCCTCCATTTGCCTCCTCAAGAACCTCACCCACTTGGATGTCTCCTACAACAACATATCCTCTCCATTCCCTACAATGCTCTACAATTGCTCCAATCTCAAGTACCTTGACCTTTCGAACAACGCCTTTGCTGGGAAGCTCCCAAATGATATAAATAGTCTACCAGCGCTGCTCGAGCATCTCAACCTTTCATCTAATCACTTCACTGGCAGAATTCCACCATCAATTGGACTGTTCCCAAGGCTGAAGTCGCTGCTCCTTGACACCAATCAGTTTGATGGGAGGTACCCAGCTGAGGATATCAGCAATCTTGCTGACCTTGAGAGGCTGACACTAGCAGTCAATCCATTTGTCCCGGCTCCCTTTCCAATGGAGTTTGGTAGGTTGACACGTCTGACTTACTTGTGGCTGTCAAATATGAATATTACCGGTGAAATCCCTGAAAGCCTATCCAGCCTCAGAGAGCTCAACGTCTTGGACTTATCATCGAACAAGATCCAAGGAAAAATTCCAAGGTGGATCTGGCAACATAAGAAACTTCAGATTCTGTACCTGTATGCAAACAGATTCACCGGTGAGATTGAATCCAACATCACAGCCTTGAACTTGGTGGAGATTGATGTTTCTGCAAATGAGTTAACAGGAACAATACCAGATGGATTTGGTAAGATGACCAACCTTACCTTATTGTTTCTCTACTTTAACAAGCTGAGTGGATCAATACCACCAAGCGTTGGGCTGCTGCCAAAGCTTACTGACATTCGGTTATTCAATAACATGCTCTCTGGATCGCTCCCATCAGAGCTTGGTAAGCACTCACCACTGGCCAATCTTGAGGTCTCCAATAATAACCTCTCTGGGGAGCTACCAGAAGGCCTCTGCTTCAACAGGAAGCTATATAGCATTGTTGTGTTCAATAACAGCTTTTCTGGAAAACTTCCATCTTCATTGGATGGTTGCTATCCGTTGCAAAATTTGATGTTGTACAATAATAATTTTTCTGGAGAGTTCCCCAGGAGCCTTTGGTCAGTGGTGACAGATCAGCTAAGTGTAGTTATGATACAGAACAACAATTTCTCTGGCACATTCCCCAAACAGCTCCCATGGAACTTCACACGTCTTGACATCAGCAACAACAGATTCTCAGGTCCCATTCCAACATTGGCAGGCAAAATGAAAGTATTCAGAGCAGCAAACAACTTGCTCTCTGTGGCTGGTTTCATGCTCTTAAGAAGGAAAAAGCATCTACAAGATCACTTGTCATGGAAGTTAACACCCTTCCACGTATTGCATTTCACCGCAAATGACATTCTTTCTGGGCTCTGCGAGCAGAATTGGATTGGAAGTGGCAGGTCTGGCAAGGTGTACCGGGTTTATGCTGGAGATAGAACAAGTGGTGGCAGGATGATGGCTGTCAAAAAGATATGGAACATGCAAAATATTGATAACAAGCTGGAGAAGGACTTCCTTGCAGAGGTTCAGATATTGGGAGAGATCAGGCACACAAACATTGTCAAGCTTCTATGCTGCATCTCAAGTTCAGAGGCAAAGCTTCTGATCTACGAGTACATGGAAAACGGCAGCCTACATCAATGGCTTCACCAGAGGGAAAGAATTGGTGTGCCAGGACCTCTGGATTGGCCAACAAGATTGCAAATTGCCATCGACTCAGCGAGAGGCCTTTGCTACATGCATCACCATTGCTCGCCTCCCATAGTGCATCGAGATGTCAAGTGTGCCAACATCCTTCTGGATCACAACTTCAGAGCAAAGATGGCAGATTTTGGGCTTGCAAAGATTCTTCTCAAAGCTGGAGACGACGAGTCATTTTCTGCTATAGCTGGAACTTTTGGCTACATGGCACCAGTTGATCTTCTCGATGAGGGAATCAGAGACCCAACCCATGTTGAGGACGCATTGGAGGTGTTTACACTTGCTGTGATTTGTACTGGGGAGCATCCTTCAATGCGGCCATCAATGAAAGACGTACTGAATATTCTTATCCAATTTGACCGTAAATCTACAAGGATTCAGGGTAGCTTGAAACATGCTGTCTCTGATGAAACAACACTTCTTGAATCCTAG
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| Protein seq | MANKRYASFFLFFMMPFSLLHKSYPQLVNQSSDEHQILLEIKRHWGSSPVLGRWSSNSAAHCNWGGITCTDGVVTGISLPNQTFIKPIPPSICLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPALLEHLNLSSNHFTGRIPPSIGLFPRLKSLLLDTNQFDGRYPAEDISNLADLERLTLAVNPFVPAPFPMEFGRLTRLTYLWLSNMNITGEIPESLSSLRELNVLDLSSNKIQGKIPRWIWQHKKLQILYLYANRFTGEIESNITALNLVEIDVSANELTGTIPDGFGKMTNLTLLFLYFNKLSGSIPPSVGLLPKLTDIRLFNNMLSGSLPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYSIVVFNNSFSGKLPSSLDGCYPLQNLMLYNNNFSGEFPRSLWSVVTDQLSVVMIQNNNFSGTFPKQLPWNFTRLDISNNRFSGPIPTLAGKMKVFRAANNLLSVAGFMLLRRKKHLQDHLSWKLTPFHVLHFTANDILSGLCEQNWIGSGRSGKVYRVYAGDRTSGGRMMAVKKIWNMQNIDNKLEKDFLAEVQILGEIRHTNIVKLLCCISSSEAKLLIYEYMENGSLHQWLHQRERIGVPGPLDWPTRLQIAIDSARGLCYMHHHCSPPIVHRDVKCANILLDHNFRAKMADFGLAKILLKAGDDESFSAIAGTFGYMAPVDLLDEGIRDPTHVEDALEVFTLAVICTGEHPSMRPSMKDVLNILIQFDRKSTRIQGSLKHAVSDETTLLES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.047857 | 0.018573 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0228300 | SBH | 10.363595 | 7.968159 | 5.053669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12910 | RBH | 0.164886 | 0.396880 | 0.191521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0228300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009290 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009380 | SBH | 0.064417 | 1.386626 | 0.318442 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009240 | SBH | 0.481091 | 3.183494 | 1.572112 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019200 | RBH | 0.177428 | 0.377186 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009140 | RBH | 0.0 | 1.062159 | 2.847494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0120100 | SBH | 0.033817 | 0.273829 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0118200 | SBH | 0.4509785 | 0.7482055 | 2.069717 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009400 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009050 | RBH | 0.085155 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009360 | RBH | 0.115681 | 0.100729 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009280 | RBH | 0.034140 | 0.877182 | 0.343852 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009160 | RBH | 0.0 | 0.0 | 0.0 |
