Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0019200 | OGI:06059270 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:22022317-22026935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acccccaacctcagctcgccgctcgcgaggaaaccggctccgcgacgaaaagaataatgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcagtgccgggcaaccgaatatctggctccatacccgcgtcgatcaggctgctggtgaagctcaactcgctcaacctgagcagcaaccggatctccggcgtgataccgccggcgagcttcgggacgctcccggcgctgaccatcctcgatctgtccggcaacgagctcaccggcgacatacctgccgatttggggtacctcaacttcaactcgctcaacgtgtcgtcgaaccggctcaccggcgaggtgccgctcacgctccagggcgcggcgtacgatcgcagcttcctcggcaacagtctctgcgccaggccgggctccggcacgaacctcccgacctgccccggtggaggcggcggcggaggcggccacgacgagctctccaagggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccaggtgagaaatctcatgttcatttcccaattcaagatccatttcaattcttgttcccaatttaatcaggttgactaattgaatgtaaccaagaacctcaaatttcttgttcattcatagattgaaattgaatgactaattggaggaaaacaaaattcacattttgcagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttagggggcaatcccggtgtgcactagcactgtagagcgagtacataggtagaggagctcatccatgatccatggtggagcttttgcagaggagtttttctctgatgacgtggcagctcggaaaacatgagcccttcagatctcagattgcagcagtaaggtaaatatccatcctgcaatctgtatgtaacataatcaagatgtttaacatgtaatcttgtaactgtatcataagacgatcttggatctttttcgatccttgtaatatattctaacagctagttatctattcttgcaggggttgtttggtttgcaatagcaccaagttgagagcttttgacaaggagcacatcacctagtagtgctcaaggaccaaacagatcacaggtaaatcatcatctccaagctaaacactgtcaggcagaatgcaatagtggattcgcatccaacattccaagttgcatttctgaaactctgaaacttgtgggcacatttggatgttctgaagaaaaccggagaaagtttcgtcggtctttggaatggactgcataaaatgggctgctggactctagtgctgctgctgctactgcacgcccgcatgatgaagcgaacttggtgtggttcgttgctactgaatgtgacatatggtgtgaaggtttttttcaaagtgggggcaggttggtctgcagaaacgaacaaatccattggatggaatcaactgaacattctgaagaaaacagtgtgcaagacaagagcatgactctgactcgtgtgcactgcagatcgtcaacatgctttggatctatctcatgtgcagccatactggcatccatccggtggccaacctttattacaaaacggtggcctgaagccctgaatgcaatgttgtacagttttctgaatgattacttactgttccatttgcatactactacggtacaaggctgccaacctgaaaaatgtcggtggtgaagaagtaaagatgatttttccaggaggagatcaagctttgtacatctcacagatgtctgctagtaccacaactgaacatcaatcttctagaacttttccatttggcaaagcgtttcttcactgaaaatgaaaagatctcagaaacatgagttttatcctcctagctgatgttagtacatggcagaagtaccgtatatggtctgcagtactgccagtgctcaccttgtttttagctagcattatcaccttgtaatgctcggttgaaaagctctcatctgctgactcaggatgacaaaaaaaaaa
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| CDS seq | atgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcaggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttag
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| Protein seq | MSNTYLPLLPALVAGVLLLAAGCAAAAGDRDTLVAIRKGWGNPRHLASWDPASAAAADHCSWEGVTCSNATNGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRCARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALRSLLLDTNRFTGAYPAAEIANLTALERLTLADNGFAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTELTLLDMSGNKLTGAIPAWVFRHQKLERLYLYENSLSGELPRNVTTANLVEIDLSSNQLGGEISEDFGNLKNLSLLFLYFNKVTGAIPASIGRLPNLTDLRLFGNELSGELPPELGKNSPLANFEVSNNNLSGALPETLCANGKLFDIVVFNNSFSGELPANLGDCVLLNNLMLYNNRFTGDFPEKIWSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGNNMFSGSIPTSATKLTVFRAENNLLAGELPADMSNLTDLTDFSGLIVLFSMLAGIVLVGSAGIAWLLLRRRKDSQDVTDWKMTQFTPLDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATATAGRMVAVKKIWNARKLDAKLDKEFEAEVTVLGNIRHNNIVKLLCCISSQDAKLLVYEYMENGSLDRWLHHRDRDGAPAPLDWPTRLAIAVDAARGLSYMHHDCAQAIVHRDVKSSNILLDPEFQAKIADFGLARMLVKSGEPESVSAIGGTFGYMAPEYGYSKRVNEKVDVYSFGVVLLELTTGKVANDAAADFCLAEWAWRRYQKGPPFDDVIDADIREQASLPDIMSVFTLGVICTGENPPARPSMKEVLHHLIRCDRMSAQGPEACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFVVHVV |
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| Function | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 [UniProtKB/Swiss-Prot:Q9M2Z1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0019200 | OsARC_06g0019200.04 | Chr06 | 22022317 | 22026721 | + | NAM | ||
| CDS seq | atgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcaggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttag
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| Protein seq | MSNTYLPLLPALVAGVLLLAAGCAAAAGDRDTLVAIRKGWGNPRHLASWDPASAAAADHCSWEGVTCSNATNGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRCARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALRSLLLDTNRFTGAYPAAEIANLTALERLTLADNGFAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTELTLLDMSGNKLTGAIPAWVFRHQKLERLYLYENSLSGELPRNVTTANLVEIDLSSNQLGGEISEDFGNLKNLSLLFLYFNKVTGAIPASIGRLPNLTDLRLFGNELSGELPPELGKNSPLANFEVSNNNLSGALPETLCANGKLFDIVVFNNSFSGELPANLGDCVLLNNLMLYNNRFTGDFPEKIWSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGNNMFSGSIPTSATKLTVFRAENNLLAGELPADMSNLTDLTDFSGLIVLFSMLAGIVLVGSAGIAWLLLRRRKDSQDVTDWKMTQFTPLDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATATAGRMVAVKKIWNARKLDAKLDKEFEAEVTVLGNIRHNNIVKLLCCISSQDAKLLVYEYMENGSLDRWLHHRDRDGAPAPLDWPTRLAIAVDAARGLSYMHHDCAQAIVHRDVKSSNILLDPEFQAKIADFGLARMLVKSGEPESVSAIGGTFGYMAPEYGYSKRVNEKVDVYSFGVVLLELTTGKVANDAAADFCLAEWAWRRYQKGPPFDDVIDADIREQASLPDIMSVFTLGVICTGENPPARPSMKEVLHHLIRCDRMSAQGPEACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFVVHVV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0019200 | OsARC_06g0019200.03 | Chr06 | 22022317 | 22026935 | + | NAM | ||
| CDS seq | atgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcaggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttag
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| Protein seq | MSNTYLPLLPALVAGVLLLAAGCAAAAGDRDTLVAIRKGWGNPRHLASWDPASAAAADHCSWEGVTCSNATNGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRCARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALRSLLLDTNRFTGAYPAAEIANLTALERLTLADNGFAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTELTLLDMSGNKLTGAIPAWVFRHQKLERLYLYENSLSGELPRNVTTANLVEIDLSSNQLGGEISEDFGNLKNLSLLFLYFNKVTGAIPASIGRLPNLTDLRLFGNELSGELPPELGKNSPLANFEVSNNNLSGALPETLCANGKLFDIVVFNNSFSGELPANLGDCVLLNNLMLYNNRFTGDFPEKIWSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGNNMFSGSIPTSATKLTVFRAENNLLAGELPADMSNLTDLTDFSGLIVLFSMLAGIVLVGSAGIAWLLLRRRKDSQDVTDWKMTQFTPLDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATATAGRMVAVKKIWNARKLDAKLDKEFEAEVTVLGNIRHNNIVKLLCCISSQDAKLLVYEYMENGSLDRWLHHRDRDGAPAPLDWPTRLAIAVDAARGLSYMHHDCAQAIVHRDVKSSNILLDPEFQAKIADFGLARMLVKSGEPESVSAIGGTFGYMAPEYGYSKRVNEKVDVYSFGVVLLELTTGKVANDAAADFCLAEWAWRRYQKGPPFDDVIDADIREQASLPDIMSVFTLGVICTGENPPARPSMKEVLHHLIRCDRMSAQGPEACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFVVHVV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0019200 | OsARC_06g0019200.02 | Chr06 | 22022317 | 22026935 | + | NAM | ||
| CDS seq | atgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcaggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttag
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| Protein seq | MSNTYLPLLPALVAGVLLLAAGCAAAAGDRDTLVAIRKGWGNPRHLASWDPASAAAADHCSWEGVTCSNATNGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRCARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALRSLLLDTNRFTGAYPAAEIANLTALERLTLADNGFAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTELTLLDMSGNKLTGAIPAWVFRHQKLERLYLYENSLSGELPRNVTTANLVEIDLSSNQLGGEISEDFGNLKNLSLLFLYFNKVTGAIPASIGRLPNLTDLRLFGNELSGELPPELGKNSPLANFEVSNNNLSGALPETLCANGKLFDIVVFNNSFSGELPANLGDCVLLNNLMLYNNRFTGDFPEKIWSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGNNMFSGSIPTSATKLTVFRAENNLLAGELPADMSNLTDLTDFSGLIVLFSMLAGIVLVGSAGIAWLLLRRRKDSQDVTDWKMTQFTPLDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATATAGRMVAVKKIWNARKLDAKLDKEFEAEVTVLGNIRHNNIVKLLCCISSQDAKLLVYEYMENGSLDRWLHHRDRDGAPAPLDWPTRLAIAVDAARGLSYMHHDCAQAIVHRDVKSSNILLDPEFQAKIADFGLARMLVKSGEPESVSAIGGTFGYMAPEYGYSKRVNEKVDVYSFGVVLLELTTGKVANDAAADFCLAEWAWRRYQKGPPFDDVIDADIREQASLPDIMSVFTLGVICTGENPPARPSMKEVLHHLIRCDRMSAQGPEACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFVVHVV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0019200 | OsARC_06g0019200.01 | Chr06 | 22022317 | 22026935 | + | NAM | ||
| CDS seq | atgtcgaacacctatctccccctcctccctgctctcgtcgccggcgtcctcctcctcgccgccggatgcgccgccgccgccggcgaccgcgacacgctcgttgccatcaggaaagggtgggggaacccgcggcacctcgcgtcgtgggaccccgcctcggcggcggcggcggaccactgcagctgggaaggcgtgacctgctctaatgccaccaacggcggcggcggcggcgccggcgtggtgacggagctgtccctgcacgacatgaacctcaccgggacggtgcccacggcggtgtgcgacctcgcgagcctgacgcggctcgacctctccaacaaccagctcaccggcgcgttccccgccgcggcgctgtcccggtgcgcccgcctccggttcctcgacctcgccaacaacgccctcgacggcgccctcccgcaacacgtcggcaggttgtccccggcgatggagcacctcaacctgtcgtcgaatcggctctccggcgccgtgccccccgaggtggcggcgctcccggcgctccggtcgctgctcctcgacaccaaccggttcactggggcgtacccagcggcggagattgccaacctcaccgccctcgagcgcctcacgctggccgacaacgggttcgcgccggcgcccgtgccgcccgcgttcgccaagctgaccaagctcacctacctctggatgtccaagatgaacatcaccggcgagattccggaggcgttctccagcctcacggagctgacgctgctcgacatgtcggggaacaagctcaccggcgcgattccggcgtgggtgttcaggcatcagaagctcgagaggctctacctgtacgagaactccctctccggcgagctgccgcgcaacgtcacgacggcgaacctggtcgagatcgacctgtcgtcgaaccagctcgggggcgagatatcggaggacttcggcaacctcaagaacctcagcttgctgttcctctacttcaacaaggtcaccggcgccatcccggcgagcatcgggcggctccccaatctcaccgacctccggctgttcggcaacgagctctccggcgagctcccgccggagctcgggaagaactcgccgctcgccaacttcgaggtctccaacaacaacctctccggcgcgctcccggagacgctctgcgccaacgggaagctgttcgacattgtcgtcttcaacaacagcttctccggcgagctcccggcgaacctcggcgactgcgtgctgctgaacaacctcatgctctacaacaaccgcttcaccggcgacttcccggagaagatttggtcgttccagaagctgaccacggtgatgatccagaacaacggcttcaccggagctctgcccgccgagatatccaccaacatctcccgcatcgagatggggaacaacatgttctccggctctatcccgacctcggcgaccaagctcaccgtgttccgggcggagaacaacctgctcgccggcgagctcccggccgacatgagcaatctcaccgacctcaccgatttttcaggcctgatcgtcctcttctcgatgctcgccggcattgtcctcgtcggcagcgccggcatcgcgtggctgctcctccggcggcggaaggacagccaggacgtcaccgactggaagatgacgcagttcaccccgctggacttcgccgagtccgacgtgctcggcaacatccgggaggagaacgtcatcggcagcggcgggtcgggcaaggtgtaccgcatccacctcacctcccgcggcggcggcgccaccgccaccgccggcaggatggtggccgtgaagaagatctggaacgcgaggaagctggacgcgaagctggacaaggagttcgaggcggaggtgacggtgctcggcaacatccggcacaacaacatcgtcaagctgctgtgctgcatctccagccaggacgccaagctgctggtgtacgagtacatggagaacggcagcctcgaccggtggctgcaccaccgcgaccgcgacggcgcgccggcgccgctggactggccgacgaggctggccatcgccgtcgacgccgccagggggctcagctacatgcaccacgactgcgcgcaggcgatcgtgcaccgggacgtcaagtccagcaacatcctgctcgacccggagttccaggccaagatcgccgactttggcctcgcccggatgctcgtcaagtcaggcgagcctgagtccgtgtcggccatcggcggcacgtttgggtacatggcgccagagtatgggtacagcaagagggtgaatgagaaggtggacgtctacagcttcggcgtcgtgttgctggagctgacgaccggcaaggtcgcgaacgacgccgcagccgacttctgcctggccgagtgggcgtggcggcggtaccagaaaggccctccgttcgatgacgtcatcgacgccgacatccgggagcaggccagtctgccggacatcatgtcggtgttcacgctcggcgtgatctgcacgggggagaacccgccggcgaggccgtccatgaaggaggtcctgcaccacctcatccggtgcgaccggatgtcggcccagggacccgaggcgtgccagctggactatgtcgacggcgccgctccgctgctggaggcgaagaaggggagccggcggaggagctcggagtctggcaggtgggacgacgacgacgacgatgacagcggcaatttcgtggtgcacgttgtttag
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| Protein seq | MSNTYLPLLPALVAGVLLLAAGCAAAAGDRDTLVAIRKGWGNPRHLASWDPASAAAADHCSWEGVTCSNATNGGGGGAGVVTELSLHDMNLTGTVPTAVCDLASLTRLDLSNNQLTGAFPAAALSRCARLRFLDLANNALDGALPQHVGRLSPAMEHLNLSSNRLSGAVPPEVAALPALRSLLLDTNRFTGAYPAAEIANLTALERLTLADNGFAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTELTLLDMSGNKLTGAIPAWVFRHQKLERLYLYENSLSGELPRNVTTANLVEIDLSSNQLGGEISEDFGNLKNLSLLFLYFNKVTGAIPASIGRLPNLTDLRLFGNELSGELPPELGKNSPLANFEVSNNNLSGALPETLCANGKLFDIVVFNNSFSGELPANLGDCVLLNNLMLYNNRFTGDFPEKIWSFQKLTTVMIQNNGFTGALPAEISTNISRIEMGNNMFSGSIPTSATKLTVFRAENNLLAGELPADMSNLTDLTDFSGLIVLFSMLAGIVLVGSAGIAWLLLRRRKDSQDVTDWKMTQFTPLDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATATAGRMVAVKKIWNARKLDAKLDKEFEAEVTVLGNIRHNNIVKLLCCISSQDAKLLVYEYMENGSLDRWLHHRDRDGAPAPLDWPTRLAIAVDAARGLSYMHHDCAQAIVHRDVKSSNILLDPEFQAKIADFGLARMLVKSGEPESVSAIGGTFGYMAPEYGYSKRVNEKVDVYSFGVVLLELTTGKVANDAAADFCLAEWAWRRYQKGPPFDDVIDADIREQASLPDIMSVFTLGVICTGENPPARPSMKEVLHHLIRCDRMSAQGPEACQLDYVDGAAPLLEAKKGSRRRSSESGRWDDDDDDDSGNFVVHVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 22026047 | 22026656 | + | OsARC_06g0019200.01 | OsARC_06g0019200.04,OsARC_06g0019200.01 | All |
| RI | Chr06 | 22025959 | 22026935 | + | OsARC_06g0019200.02 | OsARC_06g0019200.01,OsARC_06g0019200.02 | All |
| RI | Chr06 | 22025195 | 22026935 | + | OsARC_06g0019200.03 | OsARC_06g0019200.02,OsARC_06g0019200.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.177428 | 0.377186 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0557100 | RBH | 2.966755 | 3.056689 | 3.144203 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36270 | RBH | 1.888547 | 1.836191 | 0.743730 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0557100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019480 | RBH | 0.168680 | 14.927708 | 4.342372 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019350 | RBH | 0.100373 | 7.631242 | 1.199780 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019410 | RBH | 0.616311 | 12.548592 | 3.171643 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009000 | RBH | 0.047857 | 0.018573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019600 | RBH | 2.594246 | 29.308929 | 7.226939 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0336700 | SBH | 0.483078 | 2.3404795 | 0.082032 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019080 | RBH | 0.047072 | 0.639242 | 0.192520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0310300 | RBH | 3.273149 | 36.7661075 | 2.40943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019530 | RBH | 0.533183 | 1.133854 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019510 | RBH | 0.538192 | 17.879303 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019160 | RBH | 0.0 | 25.848269 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019860 | RBH | 0.127404 | 0.776734 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019310 | RBH | 0.090552 | 7.453484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019190 | RBH | 0.133482 | 1.892876 | 1.161817 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019370 | RBH | 0.929209 | 12.939723 | 2.550692 |
