Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004530 | OGI:02002360 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3157693-3160018 | ||||||||
| Gene Symbol | RLCK62, OsRLCK62 | ||||||||||
| DNA seq | atgcagctcctcctagtgatcatcatattgtccacagtgatgatctcctcgtccgatgcttattatcaatcatgcagatgcttgggtgatggcaagaacaaccagacttcctgtgatcaagcgatcgacgactccatcaaaggttcaggtccgtctttttttgcagcaaaattctctctccaaccgaaccagtagtacactcattggggcaaccctttgcagggcagctaatttttcgacgcatacagccgccgatcactagcgtcgcctttaatgtgagcttcatcggaagcctcgccttcatcctccgcccagtcccagctggaggagaatatagcaataatagcgatgcctatggctccctcgtgttctccggcaacacttataataaaacgacgacgattattactcattctgactgctgcagcactggcgacagtagttccaacgtttttgttaagatgggtgcattaaaaaatgtttctacctttggtgtaaacattacaatctcacggaaggcctccaatattcaaatagtacaagggaacaactacaccatatctgtatggattgattacaatcgtgcagctgaagctgcagatcgcagcatatcggtcttcgttgccaaggcaggagagacgaaacctaaggaagccataatcgtcaacaaggacgacaatatcagcaaaggcgcaaccctgcaaggctgcatcttctcctcgatggacctgcaacgactccatcagatcagtgacatggatgtgacattcgcctatggccaacatgttagccatagcccatcgaggtcgttgccgaccatactggcatcagttctcggaccagcaggcggtgcagtcattgctgcagctgtgacatggttatacttcaactcctcctacaggaggtggaagaaggacttcgatcagctggccaagtccatgcaaagcctccccggggttcctgtcaagatcagcttcgccgatatccgcaaggccaccaacaacttccatgacaccatgaagctgggcagcggcgcatttggcgccgtctacagatgcaagctccagtccttgaacttgaaggggcaaccggtggaggtagcagtcaagaagtttacacgtgccgacacccggtcctaccaagactttctcgccgaggtcagcatcatcaatcgtctgcgccacaagagtattgtccctctcatcggttagtctcctccaattcttgtacagtttaattttctatttgtcaatcgcctaatttttcatatttatcggtcccctaatctaaatttgcgatcctagctagctacttcctctatttcataatgtaagactttctagcatatgtgtctagattcactaatatctatattaatgtgggcaatgctagaaagttttacattatgaaacggaggaagtagttgttagttttgtcgttaaatatacgtttccatacatacatacatttcattttgtgacaacaagttgacacatataaattattatatataggttggtcatacaacaaaggagagcccctacttatctatgagtacatgcccaatggtagcttagacaggcacatattcgctagaactgaccagctgcatggtggccaccatacaacgatccggcaatgggacacccgctacaacattgtcagggatattgccaccggcttgcactacgttcatcacgagtatgagcccaaggtgctccaccgcgacatcaaggctagcaacatcctgcttgactccaccttccgtgcccgccttggtgactttggtctcgcctgcaccgtcgccgtcggccggagctccgtctcgtgtggtgtcgcaggaacattcggctacatcgccccggactacgcaattaacctgaaagcaacgcagcagactgacgtctatgcgtttggggtgctggttcttgagattgttactggcaagaaggcgatgctgaatgacgcacaatttggccatatcacagattgggtctggcatctccaccaacgggggaggctccttgaagctgtagatggcgtgcttggcactgccggccatggtgagttcgataccgaagaggcaagacgcttgcttcttctaggcttggcgtgcagcaacccgaacccgtcagaccggccaacgatggtggtggcggtgcaggtgattgcaaaattagcaccggcaccggatgtgccacttgagaagccgactgttgtgtgctttcctcctctaactttgccagtagggtcttcatcatctgaatgcactgattattacgtcacggcaaagggtagtctgcagatcaagagctcaatggtatag
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| CDS seq | atgcagctcctcctagtgatcatcatattgtccacagtgatgatctcctcgtccgatgcttattatcaatcatgcagatgcttgggtgatggcaagaacaaccagacttcctgtgatcaagcgatcgacgactccatcaaaggttcagggcagctaatttttcgacgcatacagccgccgatcactagcgtcgcctttaatgtgagcttcatcggaagcctcgccttcatcctccgcccagtcccagctggaggagaatatagcaataatagcgatgcctatggctccctcgtgttctccggcaacacttataataaaacgacgacgattattactcattctgactgctgcagcactggcgacagtagttccaacgtttttgttaagatgggtgcattaaaaaatgtttctacctttggtgtaaacattacaatctcacggaaggcctccaatattcaaatagtacaagggaacaactacaccatatctgtatggattgattacaatcgtgcagctgaagctgcagatcgcagcatatcggtcttcgttgccaaggcaggagagacgaaacctaaggaagccataatcgtcaacaaggacgacaatatcagcaaaggcgcaaccctgcaaggctgcatcttctcctcgatggacctgcaacgactccatcagatcagtgacatggatgtgacattcgcctatggccaacatgttagccatagcccatcgaggtcgttgccgaccatactggcatcagttctcggaccagcaggcggtgcagtcattgctgcagctgtgacatggttatacttcaactcctcctacaggaggtggaagaaggacttcgatcagctggccaagtccatgcaaagcctccccggggttcctgtcaagatcagcttcgccgatatccgcaaggccaccaacaacttccatgacaccatgaagctgggcagcggcgcatttggcgccgtctacagatgcaagctccagtccttgaacttgaaggggcaaccggtggaggtagcagtcaagaagtttacacgtgccgacacccggtcctaccaagactttctcgccgaggtcagcatcatcaatcgtctgcgccacaagagtattgtccctctcatcgacaggcacatattcgctagaactgaccagctgcatggtggccaccatacaacgatccggcaatgggacacccgctacaacattactgacgtctatgcgtttggggtgctggttcttgagattgttactggcaagaaggcgatgctgaatgacgcacaatttggccatatcacagattgggtctggcatctccaccaacgggggaggctccttgaagctgtagatggcgtgcttggcactgccggccatggtgagttcgataccgaagaggcaagacgcttgcttcttctaggcttggcgtgcagcaacccgaacccgtcagaccggccaacgatggtggtggcggtgcaggtgattgcaaaattagcaccggcaccggatgtgccacttgagaagccgactgttgtgtgctttcctcctctaactttgccagtagggtcttcatcatctgaatgcactgattattacgtcacggcaaagggtagtctgcagatcaagagctcaatggtatag
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| Protein seq | MQLLLVIIILSTVMISSSDAYYQSCRCLGDGKNNQTSCDQAIDDSIKGSGQLIFRRIQPPITSVAFNVSFIGSLAFILRPVPAGGEYSNNSDAYGSLVFSGNTYNKTTTIITHSDCCSTGDSSSNVFVKMGALKNVSTFGVNITISRKASNIQIVQGNNYTISVWIDYNRAAEAADRSISVFVAKAGETKPKEAIIVNKDDNISKGATLQGCIFSSMDLQRLHQISDMDVTFAYGQHVSHSPSRSLPTILASVLGPAGGAVIAAAVTWLYFNSSYRRWKKDFDQLAKSMQSLPGVPVKISFADIRKATNNFHDTMKLGSGAFGAVYRCKLQSLNLKGQPVEVAVKKFTRADTRSYQDFLAEVSIINRLRHKSIVPLIDRHIFARTDQLHGGHHTTIRQWDTRYNITDVYAFGVLVLEIVTGKKAMLNDAQFGHITDWVWHLHQRGRLLEAVDGVLGTAGHGEFDTEEARRLLLLGLACSNPNPSDRPTMVVAVQVIAKLAPAPDVPLEKPTVVCFPPLTLPVGSSSSECTDYYVTAKGSLQIKSSMV |
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| Function | Probable L-type lectin-domain containing receptor kinase S.5 [UniProtKB/Swiss-Prot:Q9FG33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004530 | OsLima_02g0004530.01 | Chr02 | 3157693 | 3160018 | + | NAM | ||
| CDS seq | atgcagctcctcctagtgatcatcatattgtccacagtgatgatctcctcgtccgatgcttattatcaatcatgcagatgcttgggtgatggcaagaacaaccagacttcctgtgatcaagcgatcgacgactccatcaaaggttcagggcagctaatttttcgacgcatacagccgccgatcactagcgtcgcctttaatgtgagcttcatcggaagcctcgccttcatcctccgcccagtcccagctggaggagaatatagcaataatagcgatgcctatggctccctcgtgttctccggcaacacttataataaaacgacgacgattattactcattctgactgctgcagcactggcgacagtagttccaacgtttttgttaagatgggtgcattaaaaaatgtttctacctttggtgtaaacattacaatctcacggaaggcctccaatattcaaatagtacaagggaacaactacaccatatctgtatggattgattacaatcgtgcagctgaagctgcagatcgcagcatatcggtcttcgttgccaaggcaggagagacgaaacctaaggaagccataatcgtcaacaaggacgacaatatcagcaaaggcgcaaccctgcaaggctgcatcttctcctcgatggacctgcaacgactccatcagatcagtgacatggatgtgacattcgcctatggccaacatgttagccatagcccatcgaggtcgttgccgaccatactggcatcagttctcggaccagcaggcggtgcagtcattgctgcagctgtgacatggttatacttcaactcctcctacaggaggtggaagaaggacttcgatcagctggccaagtccatgcaaagcctccccggggttcctgtcaagatcagcttcgccgatatccgcaaggccaccaacaacttccatgacaccatgaagctgggcagcggcgcatttggcgccgtctacagatgcaagctccagtccttgaacttgaaggggcaaccggtggaggtagcagtcaagaagtttacacgtgccgacacccggtcctaccaagactttctcgccgaggtcagcatcatcaatcgtctgcgccacaagagtattgtccctctcatcgacaggcacatattcgctagaactgaccagctgcatggtggccaccatacaacgatccggcaatgggacacccgctacaacattactgacgtctatgcgtttggggtgctggttcttgagattgttactggcaagaaggcgatgctgaatgacgcacaatttggccatatcacagattgggtctggcatctccaccaacgggggaggctccttgaagctgtagatggcgtgcttggcactgccggccatggtgagttcgataccgaagaggcaagacgcttgcttcttctaggcttggcgtgcagcaacccgaacccgtcagaccggccaacgatggtggtggcggtgcaggtgattgcaaaattagcaccggcaccggatgtgccacttgagaagccgactgttgtgtgctttcctcctctaactttgccagtagggtcttcatcatctgaatgcactgattattacgtcacggcaaagggtagtctgcagatcaagagctcaatggtatag
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| Protein seq | MQLLLVIIILSTVMISSSDAYYQSCRCLGDGKNNQTSCDQAIDDSIKGSGQLIFRRIQPPITSVAFNVSFIGSLAFILRPVPAGGEYSNNSDAYGSLVFSGNTYNKTTTIITHSDCCSTGDSSSNVFVKMGALKNVSTFGVNITISRKASNIQIVQGNNYTISVWIDYNRAAEAADRSISVFVAKAGETKPKEAIIVNKDDNISKGATLQGCIFSSMDLQRLHQISDMDVTFAYGQHVSHSPSRSLPTILASVLGPAGGAVIAAAVTWLYFNSSYRRWKKDFDQLAKSMQSLPGVPVKISFADIRKATNNFHDTMKLGSGAFGAVYRCKLQSLNLKGQPVEVAVKKFTRADTRSYQDFLAEVSIINRLRHKSIVPLIDRHIFARTDQLHGGHHTTIRQWDTRYNITDVYAFGVLVLEIVTGKKAMLNDAQFGHITDWVWHLHQRGRLLEAVDGVLGTAGHGEFDTEEARRLLLLGLACSNPNPSDRPTMVVAVQVIAKLAPAPDVPLEKPTVVCFPPLTLPVGSSSSECTDYYVTAKGSLQIKSSMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0106500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054200 | RBH | 0.013093 | 2.2930885 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004220 | SBH | 0.034492 | 0.108827 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008490 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008800 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0007700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008540 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008680 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030860 | SBH | 0.0 | 49.859478 | 0.779717 |
