Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0002890 | OGI:02006740 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:2001803-2006883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaccctgcggattaacagagtaaactgcaacaaaccacgcgacccccaaacctctctctctctcctcgcctccgccgtcgccgtcgccgtcctcgactgctcctccggtgtgatccgatcacgcgcggcctctccgcctcccgctcgcccttctccgcttcgcgtgttgtactgttctcccgcggtcccgcccgagcagaggtaagaggaggaggaggtgggtgagagaccgcgtttgatccctgggccgaggcggcgcgggatcgggtgggggcgtggttggaggtgttgtttttgtttttcgggtggaatcagcttcgtgccgcgcgattgatggttgtttcgtgtgttgtggctgttattttttttttttaggtttgggttggccagcgagggaggttggctagggcagcgggctgatgagagaggcgtcaggcatgtccgggggagaagacgtccgcaaggtttctcgccaggacatacagctcgtgagcaccacaggaaccctgatccctaaccttttctctccccctcaattttttttgagcctaccttggttgtgcatgcgctgtgctgtttgtcccccttcttcacgacgattttcaagttatacgttatcattcagatgcaaggaataaccgaaacgcgtgttgtcgtagctaccatgttatcattcagatgcaaggaataaccgaaacgcatgttgtcatagctaccatgctatcattcagatgcaaggaataacagaaacgcatgttgtcgtagctaccatgctatcattcagatgcaaggaataaccgaaacgcatgttgtcgtagctacaatgctatcattcagatgcaaggaataaccgaaacgcatgttgtcgtatctaccatgttattaatcagatgcaaggaacaaccgaaatgcatgttgtcgttgctaccatgttgtcattcagatccaaggaataaccgaaacgcatgttgtcgtagctaccatgtttcctttatatgtatatttattagtaccttttatgcctttcataattgaatggattgacatggctggcgaatgtctgtgttgctttaatatgccctcatttgggcttttatgtactagggttagttcgttatttcagtatatgcgcgatcccgtgttggactttagttaaagatcatgtgctggagtcactgcaggacaaggttgtcggaaggagagagaaaggagagcaaaagagtttggggatgaagggaaaaggggaaagaaatttaaggaaaaacacgtggcccaatttattatttgaagctgaaaatctcataaagcagaattatgatgtctaacggcataattgaaaatttgaaactctttatgtgcgtttctttccttttcttcaagtcaaatgctgaataggcaaccgctcttgcttcaatatccaatgcttaaaaaagaacttctgaaaaaaaatcattgtagtgttcccttacctttccttttttaatatgcaagatatgctctcttttttttgtcggatgtcctttatcatttcttgtactttctcatttattttgactctgttaacacttttgtgtgaacatattggaaactctgtagttgtacttctctctgcatacttgaagcaataagtcctcatacaaaaattgttttacaggtccagaatcttattgaacgatgtcttcagctttatatgaaccagaaagaagtggttgagaccctatcattccaggcgaaaattgaacctagttttactgagcttggtaatacccttatacagattttctttttcttgttgtgcactgaatgtagcataactataacttggttgacttcccattgcatattgacatagcaatatagcattcatggtgcaccaagcctttgaatttttatgagccaatggttaatatcggacaggaatatgtgtgctttctaatacaatttggagggcattaatttcattccgtcgtaattcataaacaattggttctccgattgctgtttttaatggtaaaacacaaacacgtttgcctctatttctcactgttgtttttctccagtctggcagaaacttgaggaagagaatcgtgagttctttaaagcatattatgtgagacttatgcttaagaatcaaataatggtcttcaacaagctccttgaggatcagtatcggcttatgtgtaaagagcagccttctggagtaccttctatgcctcctactactaatggctccaacatgggcacatgtaagtatatgttgttttttttttcatcagctgtctatacaatgatgttaccttgcttactgttcaacaaatccctctaaactatttcattctaaattgatgctagaggttgtttaccctcttattcgggtaatatagctgttccgtctgtatatattaagacagtagtaaactagtagagtgatgtccgtttctttgtactagtgatacagtatgaagaatttatgggcttgccagtagtatatcttgggattaccatcgagtttagatgatttgcaagttgcaactttggtagtttggctctcctcaagatctaacatttcccgccttccaacgaaaatcataatatcatattaagttgattttaggccactttatgtttactagttactactgtgcttttagagttctctactggcagttttgttagatcagaacagtatttgagaaagtttgttccctagtcctgaatcctgatacatagcttattactaagtttgtaatttttgtgatgtccggaccaaattttattatgttctgacatagttcactgttgactctcagtgaatcaaaatgcatgctttttgccagacactactcccagcactgcaatgccagatagcttgctacccaatggaagttccagcggtattgtaaatggcactccatccagtgaccaatttatctatgctggtaaagtcattcatggtcttcctagcagtatggatgcttcatctagtctactggcagcacataactcaactgctgggaggtttaatggagacaatggaacaacaatcaagacagaagcaagctactcgggcaactctgattttggtttctgcaatgagagcgctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctctgagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggtttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaaagtgcaggtattattttctgtgatattaccTtttttttttttagttttccttttcttcagcattgctgtttgctgtgtaatgtatacatacaccttttattttgggttgtctgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataatttctcagagtctactcctggagaccatgcaggttaattatccccttccctccagttttctgtttcgttcttatccaccaccacagtacaccccacccccacaacatgtaaggcaagctagacaaggaaatattgacttgaacatacggcactgaggcattgatgtaacgctcaatctagctaatgtttctcttgctattgtcagaaataggaaatagacggctagataccatatccgagggtgttagttatgaagattttggaagcgattaatcagatattgatggtactgcttaaggtaatcaaactttaggcaaaatcacaactagacacatttccccttttcttccatttaattttctggtcttgcattggattggattgtgggggtttgtggcggaaaattaactctctaagtattcccgtgttgattggtatgcatatggcacttccatatttaagcggtaatttgtggaatgtcttcacatggctgtatgagaacattctgcagaagtctgccttggtgggattctgtctttcaggcccttgagtttacctgttgtttatcctaagcacaacaaaaaatgggtcgaagttattgcatcatgagacagttgatttgtgacagctaataaacagtgtttatcgaacactgttcttgcaccttagacattttgtccaccgtgagcttcctattcctcatgtgatgctgaagaagattgtagctggatgttagtccaatactccatccttaggcactcaactaggcatcagcatgcatactctactgttacatgggctcggtagttactagttgcattatttttcaacttaagagctagtctgagcatgaaaaactaaacagagaagtacataaatggaacggccagctgaataaagaaaattcatctgatgtattatcctttaggttgccacaatacactaactttagatggcacaaggattatttaatttaaaaacctgatgatggtgccatcagcctgtgaatatggtggtggtgtgtggcaaggggatgaagatggggggtttgcttagagcatgccctctctttttctattcttgaatagcaaaatagggtgttatctatatgctactggtttaactcttctaacttgattcatcgatctctatgtatgtgcaggttgagcagtgatgcataactttgtacatagtagtttgggcaagtgagtctatattcgtggccatggaactcagctaatttcatggaaactattgcttcgtcagttttaggtcttgttctgttggactaccagcttcggtgacttgtgtgagaatatttcatggcctaataatgtgtcgcattgactgatgcaagaaacctattgtccctgtgtcattgctgaagatattgtagaagttagcgttaatggtgactggaagctttacattgacatttcgtgctgttgcacttgatgtgtagtttgtacatgatgcttagttaacattttccctctgttgcacttgctgcggttggccatgtcgcgctctgcactcttcggttgttcagacatgagagtttacaataattcagtattggagaagttggtaaaactgtcagattgttgacgcttggtgaagtttgattctcaa
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| CDS seq | accctgcggattaacagagtaaactgcaacaaaccacgcgacccccaaacctctctctctctcctcgcctccgccgtcgccgtcgccgtcctcgactgctcctccggtgtgatccgatcacgcgcggcctctccgcctcccgctcgcccttctccgcttcgcgtgttgtactgttctcccgcggtcccgcccgagcagaggtttgggttggccagcgagggaggttggctagggcagcgggctgatgagagaggcgtcaggcatgtccgggggagaagacgtccgcaaggtttctcgccaggacatacagctccaataagtcctcatacaaaaattgttttacaggtccagaatcttattgaacgatgtcttcagctttatatgaaccagaaagaagtggttgagaccctatcattccaggcgaaaattgaacctagttttactgagcttgtctggcagaaacttgaggaagagaatcgtgagttctttaaagcatattatgtgagacttatgcttaagaatcaaataatggtcttcaacaagctccttgaggatcagtatcggcttatgtgtaaagagcagccttctggagtaccttctatgcctcctactactaatggctccaacatgggcacattgaatcaaaatgcatgctttttgccagacactactcccagcactgcaatgccagatagcttgctacccaatggaagttccagcggtattgtaaatggcactccatccagtgaccaatttatctatgctggtaaagtcattcatggtcttcctagcagtatggatgcttcatctagtctactggcagcacataactcaactgctgggaggtttaatggagacaatggaacaacaatcaagacagaagcaagctactcgggcaactctgattttggtttctgcaatgagagcgctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctctgagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggtttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaaagtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataatttctcagagtctactcctggagaccatgcagaaataggaaatagacggctagataccatatccgagggtgttagttatgaagattttggaagcgattaa
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| Protein seq | TLRINRVNCNKPRDPQTSLSLLASAVAVAVLDCSSGVIRSRAASPPPARPSPLRVLYCSPAVPPEQRFGLASEGGWLGQRADERGVRHVRGRRRPQGFSPGHTAPISPHTKIVLQVQNLIERCLQLYMNQKEVVETLSFQAKIEPSFTELVWQKLEEENREFFKAYYVRLMLKNQIMVFNKLLEDQYRLMCKEQPSGVPSMPPTTNGSNMGTLNQNACFLPDTTPSTAMPDSLLPNGSSSGIVNGTPSSDQFIYAGKVIHGLPSSMDASSSLLAAHNSTAGRFNGDNGTTIKTEASYSGNSDFGFCNESAFLEPCQSIGDASGGSFSSSELNGQPLGDPIMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFIPSEPNNFSESTPGDHAEIGNRRLDTISEGVSYEDFGSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0002890 | OsLima_02g0002890.03 | Chr02 | 2001805 | 2006881 | + | NAM | ||
| CDS seq | accctgcggattaacagagtaaactgcaacaaaccacgcgacccccaaacctctctctctctcctcgcctccgccgtcgccgtcgccgtcctcgactgctcctccggtgtgatccgatcacgcgcggcctctccgcctcccgctcgcccttctccgcttcgcgtgttgtactgttctcccgcggtcccgcccgagcagaggtttgggttggccagcgagggaggttggctagggcagcgggctgatgagagaggcgtcaggcatgtccgggggagaagacgtccgcaaggtttctcgccaggacatacagctccaataagtcctcatacaaaaattgttttacaggtccagaatcttattgaacgatgtcttcagctttatatgaaccagaaagaagtggttgagaccctatcattccaggcgaaaattgaacctagttttactgagcttgtctggcagaaacttgaggaagagaatcgtgagttctttaaagcatattatgtgagacttatgcttaagaatcaaataatggtcttcaacaagctccttgaggatcagtatcggcttatgtgtaaagagcagccttctggagtaccttctatgcctcctactactaatggctccaacatgggcacattgaatcaaaatgcatgctttttgccagacactactcccagcactgcaatgccagatagcttgctacccaatggaagttccagcggtattgtaaatggcactccatccagtgaccaatttatctatgctggtaaagtcattcatggtcttcctagcagtatggatgcttcatctagtctactggcagcacataactcaactgctgggaggtttaatggagacaatggaacaacaatcaagacagaagcaagctactcgggcaactctgattttggtttctgcaatgagagcgctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctctgagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggtttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaaagtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataatttctcagagtctactcctggagaccatgcagaaataggaaatagacggctagataccatatccgagggtgttagttatgaagattttggaagcgattaa
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| Protein seq | TLRINRVNCNKPRDPQTSLSLLASAVAVAVLDCSSGVIRSRAASPPPARPSPLRVLYCSPAVPPEQRFGLASEGGWLGQRADERGVRHVRGRRRPQGFSPGHTAPISPHTKIVLQVQNLIERCLQLYMNQKEVVETLSFQAKIEPSFTELVWQKLEEENREFFKAYYVRLMLKNQIMVFNKLLEDQYRLMCKEQPSGVPSMPPTTNGSNMGTLNQNACFLPDTTPSTAMPDSLLPNGSSSGIVNGTPSSDQFIYAGKVIHGLPSSMDASSSLLAAHNSTAGRFNGDNGTTIKTEASYSGNSDFGFCNESAFLEPCQSIGDASGGSFSSSELNGQPLGDPIMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFIPSEPNNFSESTPGDHAEIGNRRLDTISEGVSYEDFGSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0002890 | OsLima_02g0002890.02 | Chr02 | 2001803 | 2005439 | + | NAM | ||
| CDS seq | atgagagaggcgtcaggcatgtccgggggagaagacgtccgcaaggtttctcgccaggacatacagctcgtccagaatcttattgaacgatgtcttcagctttatatgaaccagaaagaagtggttgagaccctatcattccaggcgaaaattgaacctagttttactgagcttgtctggcagaaacttgaggaagagaatcgtgagttctttaaagcatattatgtgagacttatgcttaagaatcaaataatggtcttcaacaagctccttgaggatcagtatcggcttatgtgtaaagagcagccttctggagtaccttctatgcctcctactactaatggctccaacatgggcacattgaatcaaaatgcatgctttttgccagacactactcccagcactgcaatgccagatagcttgctacccaatggaagttccagcggtattgtaaatggcactccatccagtgaccaatttatctatgctggtaaagtcattcatggtcttcctagcagtatggatgcttcatctagtctactggcagcacataactcaactgctgggaggtttaatggagacaatggaacaacaatcaagacagaagcaagctactcgggcaactctgattttggtttctgcaatgagagcgctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctctgagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggtttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaaagtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataatttctcagagtctactcctggagaccatgcaggttaa
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| Protein seq | MREASGMSGGEDVRKVSRQDIQLVQNLIERCLQLYMNQKEVVETLSFQAKIEPSFTELVWQKLEEENREFFKAYYVRLMLKNQIMVFNKLLEDQYRLMCKEQPSGVPSMPPTTNGSNMGTLNQNACFLPDTTPSTAMPDSLLPNGSSSGIVNGTPSSDQFIYAGKVIHGLPSSMDASSSLLAAHNSTAGRFNGDNGTTIKTEASYSGNSDFGFCNESAFLEPCQSIGDASGGSFSSSELNGQPLGDPIMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFIPSEPNNFSESTPGDHAG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0002890 | OsLima_02g0002890.01 | Chr02 | 2001803 | 2006883 | + | NAM | ||
| CDS seq | atgagagaggcgtcaggcatgtccgggggagaagacgtccgcaaggtttctcgccaggacatacagctcgtccagaatcttattgaacgatgtcttcagctttatatgaaccagaaagaagtggttgagaccctatcattccaggcgaaaattgaacctagttttactgagcttgtctggcagaaacttgaggaagagaatcgtgagttctttaaagcatattatgtgagacttatgcttaagaatcaaataatggtcttcaacaagctccttgaggatcagtatcggcttatgtgtaaagagcagccttctggagtaccttctatgcctcctactactaatggctccaacatgggcacattgaatcaaaatgcatgctttttgccagacactactcccagcactgcaatgccagatagcttgctacccaatggaagttccagcggtattgtaaatggcactccatccagtgaccaatttatctatgctggtaaagtcattcatggtcttcctagcagtatggatgcttcatctagtctactggcagcacataactcaactgctgggaggtttaatggagacaatggaacaacaatcaagacagaagcaagctactcgggcaactctgattttggtttctgcaatgagagcgctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctctgagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggtttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaaagtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataatttctcagagtctactcctggagaccatgcagaaataggaaatagacggctagataccatatccgagggtgttagttatgaagattttggaagcgattaa
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| Protein seq | MREASGMSGGEDVRKVSRQDIQLVQNLIERCLQLYMNQKEVVETLSFQAKIEPSFTELVWQKLEEENREFFKAYYVRLMLKNQIMVFNKLLEDQYRLMCKEQPSGVPSMPPTTNGSNMGTLNQNACFLPDTTPSTAMPDSLLPNGSSSGIVNGTPSSDQFIYAGKVIHGLPSSMDASSSLLAAHNSTAGRFNGDNGTTIKTEASYSGNSDFGFCNESAFLEPCQSIGDASGGSFSSSELNGQPLGDPIMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFIPSEPNNFSESTPGDHAEIGNRRLDTISEGVSYEDFGSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 2002291 | 2003458 | + | OsLima_02g0002890.03 | OsLima_02g0002890.02,OsLima_02g0002890.03,OsLima_02g0002890.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.210006 | 0.686634 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0137100 | RBH | 1.742719 | 2.223786 | 4.765030 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04450 | RBH | 1.127206 | 1.589719 | 1.467687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0137100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002890 | RBH | 1.040461 | 27.564034 | 8.607719 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002970 | RBH | 0.135236 | 8.972445 | 3.443527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002910 | RBH | 4.146942 | 24.454168 | 10.384855 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002880 | RBH | 0.245900 | 0.618790 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002910 | RBH | 6.941238 | 16.239717 | 18.152382 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002820 | RBH | 0.717730 | 1.629428 | 1.610757 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0034400 | RBH | 8.9232475 | 59.2251645 | 21.780398 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028390 | RBH | 0.153788 | 0.185298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002820 | RBH | 0.428285 | 14.381923 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002890 | RBH | 8.050609 | 41.849411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0002980 | RBH | 1.023833 | 3.276208 | 2.312601 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002940 | RBH | 0.990987 | 20.193205 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002920 | RBH | 0.907162 | 4.360154 | 1.592274 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002870 | RBH | 2.039359 | 66.375038 | 8.682402 |
