Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0016400 | OGI:01046240 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:15244017-15252941 | ||||||||
| Gene Symbol | RLCK35, OsRLCK35 | ||||||||||
| DNA seq | ttgcagccatctaacatgtagggattgccgtcacttgagcattgacaagagtaaccttcgtttggCTcatcatagcaactgtaattgccacacgcatagctcttcttgtcccgctgagctgttaaacaatttggactgtcggtgataacggtagacaggtaagtcgaagcaccgatggtacttgcgttgatatctctggccagtagacgaggttttacatatatgccattaaaaaagatgaaccctgcctctgtgccactaaaaagttcgagcatccctctgtgccatcgttaaactttatcgcgccctccgaaccattccgtcatcatcgtcccccgccagtgccgtccccccgccgccgcgtcgacgacagcaccgccctgctcaccgccgcgtcgaaccgcctccacggccacgtcggggtgcacgacggccttctcttccaccggcgctgacgtcttcgccgagtcgagccagcgacgccgccggatgcctccccaatccccatccggcgcccgacctcctcctgcctggcgctccatcgacggtgctccccggtcgtcgcccaacccatgccgttgcaatcagacaccgcccatgtcggcgcGCCGgccgtctccgccgcgccaagcaccaggcgccgccgtgcccggccgtcgccgcttgtgtgcgctcgcgcgtgggagaaaaggggaaggagcgagaggaagaaaccggaagaaagtgcaatagggacaTtttttctgcccgggcccacatgtcagagctgccaaacgggtgaaccctaacagaatagcgacggaatggtgtagagggcgcgataaagttcgacgatggcatagagggaggctcgaattttttagtgccacacaGgcaggggtcatcttttttaatggcacacaggtaaaaacctctcagtagatcacccatgctaaaataatactggtacgagccatatccggtcgataggaaagccttgatagaagcattagcatgcaaagacggcatttgtactgcttcatcttcgatctgaatgacagtaaatctgaaggccctagtatttcttcggaaggagatactgcagcagcccatgccgctgcagctcactcctgtcgcctccttcttcatgactgcgatcactggtgaagaaaccatctttcctcccgattggtaacccattttagttctggttttctaaccgggagtagcaatccgggctatctttagtcccgggtgaaataaccggaactaaagatccatctttagtaccggttgttgttactaagatccatctttagtaccaaccgggacagagggatctttagtcccggttgttgttattcaccgggagtaaagagagaatagcggcagtatcagatggtccccttttcttttttttcctttttattttctcccgaatcaagtggcatgcaaatccccaaatcaaaccctaaatcccaaatcagaataacatcccaaattcacatcacaaatcttaaagttacacacaaatcaaatacatcacaaatcctaaaaaatcacacacaaatcaaatacatcacagatccatacaataaatcataaatttatacatctaagggaatcacaaattaataaaaaaaagaaaaacacaaagctgctcgccacggccgccacctgcagccccgctgccgctggccgatgggcgcggccccgccggcccgccggatgggaaggggagggggggagaagaggaggaaggggtggaggtggaggagaggggatgaggaagagaggataagattagttgagatctgtgtgagagaagaggaggagaaggtgagttgagaggataagtgatagggattatatactacatgttcaattttagttccggttggtaatacttgatctttactcccgattggtagtatcaactgggactaaagtggtaatctttagtctcggttggtagtatcaatcgggactaaagattctcggccctctgacatgcctctgacagggaatgaaccatctttagtcccggtttttaatggaatcgggactattgtggaatttggtcgaccgaccaaagatggtttatccaccagtggatgttgtcacacaagcttgaacaataccccaagacgtcatctgtatcggtgtcgaacatgtggaccttgtaagatcaacgtatgttttgattcttattatgtgatgaacaattggcatatgtgattattggttttgatatttggagattattgtcgaagtggttttggagataattgattttcaggtaatgaacagggtttactattttgtcgggaccggtcagaccgggcggtggttgccggtcagactggtgctatgtgagcggtcagaccggcttgctcacggtctaactggccgaCGCtgtgtcagtttcagttttaggttgtttctttggatatccgtgattgtttcatggttatggcttctagatggatactatacgtatgtaatactgttgtttgctaacaatgagtcaagttggagatagcttggtctcggaatatggtttctttgtttgtttgacgtgtaggtgactcgatgtctcgagagagtatttgcggtgatggaacgggagtcggcttggtggtaagacgatgtccgttgtggtcagatatcatgcgggatactaaggctagagttgatgcacgtggttgatggagattccatattacatacgatggatgtattgtgtgcgtgtgggatgcggagtcgaatttggaaggagtccaaatttggtacgattggttatgtaaagtttttttcttgtactagagggtttcctaaggtgtttaggactcttagtatgagtttagttcgtggctttaggctgcctacctcatgtacaaatagagggggagcgtgaggcttcccggtatcgctttttagagcaattgagttgctagattagttagggtttcgaatttagtcgagatttttgtaaggagtgctgttggtgtactttgtaaacacagagagaagtaataaagttgtcatctactttgagagttcttcgatttgtgtttcaccgggtttcgacggtctaaccagcatctcaccggcgatcagatcggcaacaggcggtggtcagaccggcggcgctagggcggtcagaccggcggcgcaggcaggcagcggcaggcgatttcggcggttcgaccgatcgatctacatcggtcagaccgacgttcatcaggcggtcagactggcgctactacttcggttagaccacgatccatcgatttcgagggtaacttttatttccgctaaaagtttttggtttttgggtatatcaaccattcacccccctctggttggcttagttcttgtgattcgatgctacaagtggtatcagagccacgtttgctcttttcgatctttaccgatcgtgagtttttgccagggctacttctaataagtttacaactaagcctcatattttcgatggaatggatttttctcattggtgtagtaggatgcaatcttacattatggttgagaattatgatatttagagaaaagtttctgttccgtatgtgattcctgaagttattaatactgctgctgaaaaaactacttttggactaaattgcaaagctcgcaatattcttttgagtgggatttctcgttcggattatgatcgtgttgctcattttcaaactgctcatgagatttgggttgctttgaataattttcatcaagctacaaataacaataaagaacttcgtcgtgatcttttaaaaaaggagtacattaaatttgagatgaaacctggagaagctttggatgactatctttctaggtttaataagattttgagtgatcttagatctgtttattcttcttatgatgctaattatccacaatctaagatttctcgtcacgttttgaatggtcttgacatgtctatttgggagatgaaagttacatctaatcaggagcctgtgaacatgtctactttgactttggattcgctttacacaaaactgaaaactcatgacatgaatattctttctcgtaaaggtgattctaagtctagtgctttggtttcgtcttcatcttctttggatgttggtgcttcttcatcgaagtcttctgttcttgctttatttaatgccatgtccgatgatcaactcgaacagtttgaggaggaggacttggttttgctatctaacaaattttctcgagctataaaaaatgttaggaacaggaaaagaggagaaccgaatcgttgttttgagtgtggagcacttgatcatcttcgttcgtattgtcctaagcttgggagaggaaagaaggaagatgatggtagagtcaaagatgatgacgtgaacaagaagaagaacatgaaggagaaagagaagaagaagcattgtatgcagtggttaattcaagaactcataaaagtttttgatgaatcggaaggtgaagatgaaagcaaaggtaagcaagatgttaatctagcttttattactcgtaatgcaagttctgatgttgatggatctgaagatggtaatgaagaaaagcttagttatgatcaattagaatatgctgcttacaaatttgctaagaaatttcaaacatgttctattacgcttgatgagaaggatcacactattgagattctaaatgctgaaattgataaattaaaatcttcgattcctgatgatgataattgtcaatcttgtgaagttttattttccgaaattaatgctttgcgagatgtcaattctgttaattgcAaaaaaattggaatttcagattgaaaaatctaaaaagttggaatcttcttttgctcctggatttgctttacatgctcgtgttgttgatgagttgattttgacaaagaatgtgttgaagaaatacaaagttactttttgtgcaagttctttgatcaatgcttcatgtgcaaataaggcaaagtaaaacaatggtgttttgatttctcaagattgttcaaagtgtgttttgaatgagaagaagttgaaagatgctttagggcgtgttaaacacatggaagaaattgttaaacaagatgaggtgttttcttgctcaacttgtagaaagcaaaaaggtcttttggatgcttgcaaaaattgtgctattcttactcaggaggtttcttacttgaaaagttctttgcaaagattttctgatggtaaaaagaacctcaacatgattcttgatccttatgcttataattctagacatcctcctactgttttgggtgttgctaggagaagtgaaattttgattgaatctgagcctaagaacactgtgtttaaatctgctggcatcatgtcttctttgaatgcatcttcttcgaaatcaaatgttgtgaatgcaaaaccttttattgttgcaaaaccatcaatttcaaaaccatctacttcacaaacttgtcgtgaaaagtacacttgttctttctgtggaaaagatggacatttggttggtttttattttagacttgcccataaatagaaaaaagaaaagagaaatttcttttgcaaaacgacgttggcaaaaatcaggttttaattcgaggaccacggttagaccgacactgaccagtcggtctgaccgcaggtgaaccggcggtcagaccggttgccaggctcggtcagatcacaggcacagcggcggtcagaccggcctcggggtgattttgcgcaaaattcaaatcggacttttgtgaagcaaaaaggtaatttttcaggtaagtctgattctgcttttgtcagtgcatatctacctactggttctactggttgtgtgactcagtgttggattccaaaatttcttatttctaaccccaacacagaggcctcgacatcttctcgtttgtaagtatttttgtggcatactccccatgtgcattcaacgttgagatgacgattacttttcaaggtaacatcaatttacttttggattgacatatttttggttctactctcttgtttattagctttttcatatgctagtatttgaggttgtagttttggttaatactattggatgtatgtcaattcttgagaattttggtgatatcgttggcaattgaatctctttttcaaaatctttgatttcttcttgatttttgttcggggagaattggaggttattttaaggaggagttagtgctttttatgaattccttttggcatgatttgagggggagtttgtaccttatggttttatcaagcaaaaatatgacaatgaaaaaattgagaaaagagagctttgttctatacatatgatattttcttgtgcatgctagtaatactttgaaggtttatttgtctctagcatagcttgtatgtattctagtcttttcatgagatttagattttgcttttaagggaaatgatgcatgacactaattctttcacttaaattaagaaaatatgcaatgttcatgctagcatatggtttgatttataaatcctttatatatatgctttattgacttgttattcctcaaatagctttaattgctcattgtgaaaaagagaataaaaatatggaaaaaaatgaataccgaatccttggaaacagtcttgacgacaaggacgtattcgatgtgagcacaataatgggtgtcgaatctctggaaacagtcttgacgacagggacgtacccggaataaaagagaaaaatatgagcaaaaatgctcaagaaaaagaaaaagtcaaattctcttggttgttttgtgcagtaggctaatttaagaaagagtgataaatgcaatagatatatgcgtttagtgtttatttttcaacttatgtgcttgttaagatgttgcattataaatcgtatgaaatcataaattttgattgtagattaaagcttaattgtaaaatctttggttcatggttctactttaatgcatgcttgttatgttatagatgggttcatcttctttttattgcaacacatgacatgatatgctatatgtatgttaagctcttatacattaatagacataattcctatgctcgatgaaatcattgtcaaaagggggagaagagataagttttggggagaagagatgagtttttaggagaagagaagagtttttgaagagcatgtttttgtttcaagtttttgagaagagcatgtttttggttcaattcatgtttttggttcaattgggaatttctatcttttaaaatggggagaaattttcttttggattttttagcacgatgtgtacatttgtacgaagtgtgctttttaccacttttgtttttatttttccaaacaccaaaacatttttaatgggtttgccaatgtgttcatcaagggggagattgtaagatcaacgtgtgttttgattcttattatgtgatgaacaattggcatctgtgattattggttttgatatttagagattactgtcgaagtggttttagagataattgattttcaggtgatgaacagggtttactgttttgtcgggactggtcagaccgggtggtggttgccggtcagaccggtgctatgggagcggtctgaccggccgacactgtgtcggttttggtttcgggttgtttctttggatattcgtgattgtttcatggttatggtttctagatggatactatacgtatgtaatactgttgtttgctaacaatgagtcaagttggagatagcttggtctcagaatatggtttctttgtttgtttcatgtgtaggtgactcgatgtctcgggagagtatttgcggtgatgtaccgggagtcggcttggtggtaagatgatgtccgtggtggtcagatatcatacgggatactaaggctagagttgatgcacgtggttgatggagattccatatggcatacgatggatgtattgtgtgcgtattggatgcggagtcgaatttggaagttcaaatttgatacgattggttatgtaaagtttctttcttgtactagagggtttcctaaggtgtttaggactcttagtatgagtttggttcgtgactttaggctgcctacctcatgtataaatAGagggggagcgtgaggcttcctgatatcgcttttgtatcgctttttagagcaattgagttgctagattagttagggtttcgagtttagtcgagatttttgtaaggagtgctgttggtgcactttgtaaacacagagagaagtaataaagttgtcatctactttgagagttcttcgatttgtgtttcaccGgcggTcagaccggcaacaggcggcggtcagaccggcggcgctagggcggtcagcggcagacgatttcggcggttcgaccgatcgatctacatcggtcagatcgacgttcatcaggcggtccgaccggcgctactattttggtcagaccgcgatccatcgatttcgagagtaacttttatttccgctaaaagtttttgatttttgggtatatcaaccattgaccccctctctgattggtttagttcttgtgattcaacactacagacctcgattccacagccgatgatgacgagttcgttgccgtatctgacggaaaggcgcctcctgctgggagctttattgtaggtgcgtaccacacgaggcgtggtactggtggcgatgttgaagatgacggaagcattaacatgcccgccttcagataatgtgtcgtgaatctccgtggtgttacccaagaagagcttgggaggatataggtggtggtgtcttcgcatgttaagctcaaaaccaccacctggtcggaagcagcccttcctgattccgaagggataggagatgttgggttccccacaggtcttggggcagtgagcaagatcctcggctgagggaggcggtcctcctgatggccaccggatggtgaggctcacatcatcacaagacgcatggtggctagtagcatatatagcagctgcacccat
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| CDS seq | atgggtgcagctgctatatatgctactagccaccatgcgtcttgtgatgatgtgagcctcaccatccggtggccatcaggaggaccgcctccctcagccgaggatcttgctcactgccccaagacctgtggggaacccaacatctcctatcccttcggaatcaggaagggctgcttccgaccaggtggtggttttgagcttaacatgcgaagacaccaccacctatatcctcccaagctcttcttgggtaacaccacggagattcacgacacattatctgaaggcgggcatgttaatgcttccgtcatcttcaacatcgccaccagtaccacgcctcgtgtgctcagcgggacaagaagagctatgcgtgtggcaattacagttgctatgatgAGccaaacgaaggttactcttgtcaatgctcaagtgacggcaatccctacatgttag
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| Protein seq | MGAAAIYATSHHASCDDVSLTIRWPSGGPPPSAEDLAHCPKTCGEPNISYPFGIRKGCFRPGGGFELNMRRHHHLYPPKLFLGNTTEIHDTLSEGGHVNASVIFNIATSTTPRVLSGTRRAMRVAITVAMMSQTKVTLVNAQVTAIPTC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0016400 | OsLima_01g0016400.01 | Chr01 | 15244017 | 15252941 | - | NAM | ||
| CDS seq | atgggtgcagctgctatatatgctactagccaccatgcgtcttgtgatgatgtgagcctcaccatccggtggccatcaggaggaccgcctccctcagccgaggatcttgctcactgccccaagacctgtggggaacccaacatctcctatcccttcggaatcaggaagggctgcttccgaccaggtggtggttttgagcttaacatgcgaagacaccaccacctatatcctcccaagctcttcttgggtaacaccacggagattcacgacacattatctgaaggcgggcatgttaatgcttccgtcatcttcaacatcgccaccagtaccacgcctcgtgtgctcagcgggacaagaagagctatgcgtgtggcaattacagttgctatgatgAGccaaacgaaggttactcttgtcaatgctcaagtgacggcaatccctacatgttag
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| Protein seq | MGAAAIYATSHHASCDDVSLTIRWPSGGPPPSAEDLAHCPKTCGEPNISYPFGIRKGCFRPGGGFELNMRRHHHLYPPKLFLGNTTEIHDTLSEGGHVNASVIFNIATSTTPRVLSGTRRAMRVAITVAMMSQTKVTLVNAQVTAIPTC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0365000 | SBH | 0.000000 | 0.089934 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g26310 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0365000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017030 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016690 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016890 | SBH | 1.403351 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016380 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016440 | SBH | 0.0 | 0.0 | 1.587021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0253900 | SBH | 0.0769765 | 2.025989 | 0.00554 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0248600 | SBH | 0.876706 | 0 | 0.0154385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016610 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016250 | SBH | 0.071538 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016460 | SBH | 0.0 | 0.0 | 0.0 |
