Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0016610 | OGI:01046210 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:15422866-15431774 | ||||||||
| Gene Symbol | RLCK35, OsRLCK35, - | ||||||||||
| DNA seq | ctaccgccgcggcggtcctcgtccaccctggccacggtcctcgtccacggccaccgccgttgagttcttcgtccatggctcgtccaccacgctagcagcgccatatccgccgctgctgccctcgtccaccgcgggcgttgccatcgccatcaccgtcaccctgtccctgctgcaggtccgcagctggcatccacgtccaccgcagccaccgtgggcgccgccatcgtccacttccttgttaggaatttcccaagcgatcgctagcaggaaaccagacgaacacaacgcacgcgtactgtggctaaacctgcaaattcgcagaacagaggaaacagagcaaattttgtgcaacgcttaactcagctgcttttctgtttacttccatatataaaggaacgaatacaacggaaacaactaaccaccaagaccacttctcacgccatgctctagctgcgtccatccccacaaccacacgacgtgatccgagctcccagcacaagacgcgggcaacgagctaaactcggataccctcataacagactccacacgatggctatcacacaacacgtgagctcatgcgtttattcagAaaaaaacggaaacatgcagataactaatcaactaactaaccgtggcacacaagattactgctaacaaaactctccctaagcttgatgtgccgattatacaggaaacataccaatttgttcccgcagctcctgaaacttgattcgagaaagtggcttcgtcaggatatctgcaagttgcccttctgtgccgatgtaactcggtgtgatttccccattctccacggcttcacgaatgaaatgaaattttgtttgaatgtgcttacttcgatcgtgaaaaacagggttcttcatcagggctagagcggattggttgtccaccctgagatcgacgacttcagttgctgcattcctgaggtcaccgaggagccgggcaagccaaatgccctggcatgcagctgttgcagctgcaatatactcagattcacaggaggagagtgctacaactctctgtttttgagactgccagctaacaggatttttgccgagaaagaaaattactcctgtggtgctcttgcgagtgtcaatgtctccagccatatcactgtcactgtaaccctgcagtcctccttcaccttccttcacatagcggcacccaagatgaatggtaccagcaacataccttatgatgcgcttcactgccgccaagtgttcgtccgtgggtttctccatgaaacgactgacataaccaaccgaatatgcaaggtctggtcgggtgttcaccagatagcgcaagcttcccactagacttctgtatactgtcgcatcaactagcgatcctgcactttccttgctcagctttagacgtggttccatcggtgttgcacaggggttgcagccggtgagcccagccttctccacaatacgcgacgcatacgctgcttgctttaaagtgatgattccagcttcttgatgtacctcgatcccaagataaaaactcaaaggaccaagatcactcatcttaaattcagccttcatctgctctttgaatcccttgatcatgccactgtcacccccgacaattaccagatcatccacatacacaccgacgagcagtcgcccactgccatcgccgcgcgcgtacagcccatgctccaacgggctctgcttgaagccaagtttcttcagtgtgcagtctagcttggtgttccaagctctgggtgcttggcgaagtccatacagcgccttatcaagcctgtaaaccttgttctcctgtccatcgatctcaaaccccggtggctgaacaacatacacctcctcaatcagttccccattgaggaatgctgatttaacgtccatatgatgcaccatccaaccttcctgcgcagcgagagcgagcaacaaacgaatagaatcaagacgagcaacaggagcgaatacctcatcaaagtcaattccagccctctgcacgtagccctttgccaccaatctcgccttgtgtttgacgacgacgccctgagcatctttcttcagtttatacacccatttcagcccaattggccgatgccccgaaggcagatcgacgagcctccaggtcttgttctcctctatcgaagagatttcatcgagcattgcccgacgccaatcctcgtcgcgttcagcttgagcgaacgttgccggttcttctccgctcaccatcatcagctcttcctggacctcacgattagcgagacctggcagcatggccggccccagcacattgtccatcgtgcggaaacggagtggtgcgtcgtcgtggtctgcatcaagattagcagctgctccagttggtggcgacacaaattcaaccgccggcgcatcgccatgcaccgaaggtgttcggccggctgtcggtgagtctgatggcgttcgcggcgatgatgaagatcgagcaggcggctccccagcgtcttggcgtgttcctgacagcgagccaggatggtacaccgtggtgtactcaacgacgaagtcggtgtcgagatcagcggccgcctcagcatcccagtcccactgggccgcttcgtcgaagacgatgtcacgggagatgtgaacacgccgagtagccggatcataggcgcgatacgccttggaccccggctcgtagccgacaaagatcattggacgactcctgtcatccagtttcttcaggttcggggtggtcgtcttcacgtgtgccacacacccaaacgtgcgcagatggtgcacggccggcggaacgccgttccacagcgcgtacggggtcttgccgccgatacccttggacgacgacctgttgagcagatacacggcggtatttatcgcctctccccaaaacatacctggcagccccttcgccttgagcatactccgcgccgtgcccaccacggattggtttcgccgctcgacaacgccgttctgttgcggagagtagggcgccgtgagctcgcgccgcattcccagctcggcgcagtactcggcgaactgtgtagacgtgaattctcccccgcgatccgtccgcaacgcgcggagcttgcgtccactcttcctttctgccgccgcctgaatacgcttgatggcagccggcgccgcatctttggtggagaggagggcgacccacatgtaccggctgtagtcgtcgacgagtagaaggaaatagcggttgccactgggtgtcgccggcgtgatcggtccacagagatctccatgcagcagtgccagcggctcgtcagaccggcaaagtgcctgccgcgggaacggcgacctccggtgtttcccggcgagacaggcctcacagacctgatcaacctgcgacaaacatggtagaccacgtaccagctcctccttgcccatcttgcagagcgccctgaagTttatgtgcccgaggcgagcatgccagcgccacgcgtcttcgtcggcgtgtgccgccaaacagaccgggcgcgccaggttgatgtcaagcatgtacagtcgccctggggtgcgagggacccgggcaagcagacgccgctgctcatcccagacccgcatgatgccatcctccgccagcactttgaagccggtctcatccaattgcccaatgctgataatattggcagcaagacggggaagataataggtgttcgacagagtgcggtgctcaccattcttgcaggcaaagagaattgtgccccgtcctgcgatccggaccacggatccatcgccgagtcgcacgttcccggtgatgttcgtgtcgaggtcggcgaacgccatcctgctgcccgtcatatggtttgacgcgccggaatccataatccagcgcccgggatcatggtcagccgcgtcgtcgagcgctgcaaatactttcatctccacgagttccaccacggcttggtggggcgatgtgggcatgtcgccctccggcgccgccgcgtcgaccgtgtcaacgcagccgccggtgagcaacatcaaggtgtgctcttcttcatcctcctgggcgacgtgagcctgttcttcgcgcttggacttgctcctgcagtccttcgcccagtgcccaagtttgccgcaatttcggcatttgtctcccttgcgcgccgaaccagagttcgtgctctcggggctcgcagtcccgccgccaccagtgcgccctctcccgccacggcgcttgccgcggccgccagagccgcccgagtcaccccgctttgcctcttgatccttcttcttctgacgttcagcccactcctcctcagttaggtacagcttcccaccggcggtgtgcgacgaggattgcccagaatcctcagcggctttcaatctgccagtaacttcctccatggacagagtagagatatcgagaagagtttcaatagacaagatgagttgattgaacctgggacgagctacccgaaggtacttttcgacgactttatcagcaggttcaggatcaccgagggttgcaagctggttgacgatggttgtgagtcgtagagcaaaatcttccacggtctcgtcaccgcggaacgcaagcgattcatactcagcgcgcactttctgtgcactcgccttgcgaatccggtcgttgccgactcgcattgtcttgatgcattcccaggcttcccgggccgacgctttggtcgccagggtgccaatcatctccggcggcacggcactgcagatagcgtcaagagccatccggtcctcatgcagagggacgtccacgccgtcgggctcgatcgccgcccacaggcagcgagcctgcagcttgatcttcatcagtagcgcccagtcgttgtagttggtcttggtcagcagcgggtagttcaccgagccgcctccttctttcaccacgcggtggatcaccagcccgcggtcacccccgccgctgcccgtggcgcggccgccggagtcatgaggagtgcgcacgatcggtgacgacgagcgacgacgcggcatgaagacgccttccaatgcgcggtcacgagtccacttcctaaaccgtgctctgataccaattgttaggaatttcccaagcgatcgctagcaggaaaccagacgaacacaacgcacgcgtactgtggctaaacctgcaaattcgcagaacagaggaaacagagcaaattttgtgcaacgcttaactcagctgcttttctgtttacttccatatataaaggaacgaatacaacggaaacaactaaccaccaagaccacttctcacgccatgctctagctgcgtccatccccacaaccacacgacgtgatccgagctcccagcacaagacgcgggcaacgagctaaactcggataccctcataacagactccacacgatggctatcacacaacacgtgagctcatgcgtttattcagaaaaaaacggaaacatgcagataactaatcaactaactaaccgtggcacacaagattactgctaacattcctttatgtgcagtcgccgtcatcggaagagaagataagaagaagagatggagaaagagggagaaagatggtgggtcccacaaaaagaataaaatattgggctgtctatataggatttgcatggttttttaggcttccatcatacagtgtttcactaagtagatcgaaaatgtttcacaaagtagataaaaaatgtttcaatcttttaaaaaagttagaacacaatcaaatcaccctatgaaacattttgctacaatgtatgaaacaacggttattgaaacatgaaacaaatccgagtacatcaaggaaaagtctatttgggattcaaatgattttttaggcttccgttatgcagattttgaagccaatcggacgctgtttcagcaagtagatcgaaaatatttcaccaagtagatcaaaaatgtttcaatcttttaaaaagctgaaacacaatcaaatcaccctgtgaaacattttgctacaacgtatgaaacaacggttctgaatatattgaaacatgaatgatgtagctatcaaagatcattctgcagccatttagcctttccgtaaaatatttatgttaccaaTatttctatttagacattagcttactataaatgacatgcaggcaggctctaaagagctaaaggcagtcccgttaacatatggtatttaatcggagctaaaggcaggctctcttattgcccttgctctaaagaagtatagcaacaggaggctatacgcgcattgttgcaaggcaccagcatgtggctgctgctccgtagccggtgaacagatgtcagtgttactcactttatgttctttgatttggctcgtttgtgagctggtctgaacttgggttttctttggcgtcgatgttcaatagcgacaatatgccgccgccgtcaggaagacacatcttctctcatcattggaggagggctaggacgagaaggtggctgcactggctaaggggatcttgagtttgaggatttttttttTgGaaaaatctgtggatctaatgtttatcggagttcagtttgtcccgttgcaacacacaggtatttttttctaataacaaaaaaatgcgtaactttaatgttgatctgatgcaacttctatgttttgttttttttttacaaatgcattttatttcttatgtaaattatcatgcattattggctattattggccaatcactatgggtaacaagtatggtccacaaatatattcatgccgagagagaaatagcatcactatgaacaaattagtactccatccgtcccaaaatagaaggtaatttaatcggataataatatggatcagccaaatccattcacacgtaatctgattgttacacatgtatgcaaggttaaagctatgcttaactacaaatcatgttgttttcttttagaaaggttactacttgccttgtatgattgtaggttaaagcatagagttgactcggattgtttactcaagcaaagtaatcgtgcaccactcttgccatcatatgaacataaaccatcaattggactagtgtcaccatctcgaggatcgactatgctacaacgtaccaattaaactacgacaaaaggttaacttattttttgttgaatttaattttgtactatctaaatggtgtacattttcatttttcaagtttatgtacaaggatcatgtcgctgctacaacaatgaattactgcatcaaagatgagatggattacgtagaagatgaagtgacaattgctaaagtcaagatgattcacgacaacgagcagatcgttcacgcgcaaatgctccaatttccaaaggacgtacgacctagctagccaactttctctatacataatatatatggttagaaagataatcaaatcttatttcacctccaacaaatatcttgtcgtttcgactttccataagtgcaatgtctattttagtagggattgcacagaagatcaaagggcctagcgaacttacatgggaatgacacatggagacctttgagctagcccacatcttgaatttagcagccattttatccccatctagaaggattgtttctagtataaatatcgatatgttttatcatttggaggactcttgacaatgagaatatgaacccctttgtttagctgtgtgttaacaaattcagaaagagatctctacccctttgctcttgtgatatcattgtgggattagagaagcggcattcgtcgtcccaattggtgctcctgctaccttcgaggTttttcttgattgattgcaggttgcgttagttgataacttagtgtggttggacgaaccctcgattcaggttaccataatagagatggtggttagtttcgaatacgatcgttaggttgcaatgttctttcgaatgcttgcagctagttatcttggttgttgatcctacaccgtgaatatgggacaccacccttatttagtcgtattagatagcacatgctaatactacgaatctgacaaatgtgtttcatctagtcaaagtatcttatatttggggcggaggtagtatgtttgtaagtaaacatgcagttagagttaccttggtcgcagtcaccgtcgaggtagggattgctattagtatatttattgatgcatgcacaacggtagcctccattttcatcatccgcatccaaacatttgttatcaccacaagcataccgctcaggatccttctgcgctattgtacagtttggttggtctgcgataatggttaataggtacgccgaagtagatgcaacagtggtttcatttatctcatcggagaggagatctcctattgtaaaattgtagtggtaggtcgtatactcttctgataagaaaaccttgatagtactagcattggcaacttggaaaggctgcgttgcttctctctgagtgatggaaactctgaaagcccggacaggtctccggaaggtgacgacgcagcagcccatgccactgcaagctttcccctctgcttccttgtgcatcatcgccatgtcagtacacatgctgaagcaatagcccagcatatcttccgtatcagggtcgaccaagtagacctcaattccgcaaccgacagccaccaaagcataataatccggcctgatgctaaggattctccctggggactcccatgtcctgttgtaggtgccgagcacacccggtgtggtggctatgttgaaagaaacataggcttgaacatacccatctctatattgatccacgatcttggtggtggtggtgttagtgttggtggcaacacccaataagaggagctttgggggtttggtggaatggtcgcaagtgagctcgaagccggggcggaaacagccggccccaacgccataaggataggagatgttggcgcccccgcaggatttgaggcagtgagcaagcttggcggccgtgggaggcgctcctgatgcagcctgcatctgcat
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| CDS seq | atgcagatgcaggctgcatcaggagcgcctcccacggccgccaagcttgctcactgcctcaaatcctgcgggggcgccaacatctcctatccttatggcgttggggccggctgtttccgccccggcttcgagctcacttgcgaccattccaccaaacccccaaagctcctcttattgggtgttgccaccaacactaacaccaccaccaccaagatcgtggatcaatatagagatgggtatgttcaagcctatgtttctttcaacatagccaccacaccgggtgtgctcggcacctacaacaggacatgggagtccccagggagaatccttagcatcaggccggattattatgctttggtggctgtcggttgcggaattgaggtctacttggtcgaccctgatacggaagatatgctgggctattgcttcagcatgtgtactgacatggcgatgatgcacaaggaagcagaggggaaagcttgcagtggcatgggctgctgcgtcgtcaccttccggagacctgtccgggctttcagagtttccatcactcagagagaagcaacgcagcctttccaagttgccaatgctagtactatcaaggttttcttatcagaagagtatacgacctaccactacaattttacaataggagatctcctctccgatgagataaatgaaaccactgttgcatctacttcggcgtacctattaaccattatcgcagaccaaccaaactgtacaatagcgcagaaggatcctgagcgcagggacagggtgacggtgatggcgatggcaacgcccgcggtggacgagggcagcagcggcggatatggcgctgctagcgtggtggacgagccatggacgaagaactcaacggcggtggccgtggacgaggaccgtggccagggtggacgaggaccgccgcggcggtag
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| Protein seq | MQMQAASGAPPTAAKLAHCLKSCGGANISYPYGVGAGCFRPGFELTCDHSTKPPKLLLLGVATNTNTTTTKIVDQYRDGYVQAYVSFNIATTPGVLGTYNRTWESPGRILSIRPDYYALVAVGCGIEVYLVDPDTEDMLGYCFSMCTDMAMMHKEAEGKACSGMGCCVVTFRRPVRAFRVSITQREATQPFQVANASTIKVFLSEEYTTYHYNFTIGDLLSDEINETTVASTSAYLLTIIADQPNCTIAQKDPERRDRVTVMAMATPAVDEGSSGGYGAASVVDEPWTKNSTAVAVDEDRGQGGRGPPRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0016610 | OsGoSa_01g0016610.01 | Chr01 | 15422866 | 15431774 | - | NAM | ||
| CDS seq | atgcagatgcaggctgcatcaggagcgcctcccacggccgccaagcttgctcactgcctcaaatcctgcgggggcgccaacatctcctatccttatggcgttggggccggctgtttccgccccggcttcgagctcacttgcgaccattccaccaaacccccaaagctcctcttattgggtgttgccaccaacactaacaccaccaccaccaagatcgtggatcaatatagagatgggtatgttcaagcctatgtttctttcaacatagccaccacaccgggtgtgctcggcacctacaacaggacatgggagtccccagggagaatccttagcatcaggccggattattatgctttggtggctgtcggttgcggaattgaggtctacttggtcgaccctgatacggaagatatgctgggctattgcttcagcatgtgtactgacatggcgatgatgcacaaggaagcagaggggaaagcttgcagtggcatgggctgctgcgtcgtcaccttccggagacctgtccgggctttcagagtttccatcactcagagagaagcaacgcagcctttccaagttgccaatgctagtactatcaaggttttcttatcagaagagtatacgacctaccactacaattttacaataggagatctcctctccgatgagataaatgaaaccactgttgcatctacttcggcgtacctattaaccattatcgcagaccaaccaaactgtacaatagcgcagaaggatcctgagcgcagggacagggtgacggtgatggcgatggcaacgcccgcggtggacgagggcagcagcggcggatatggcgctgctagcgtggtggacgagccatggacgaagaactcaacggcggtggccgtggacgaggaccgtggccagggtggacgaggaccgccgcggcggtag
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| Protein seq | MQMQAASGAPPTAAKLAHCLKSCGGANISYPYGVGAGCFRPGFELTCDHSTKPPKLLLLGVATNTNTTTTKIVDQYRDGYVQAYVSFNIATTPGVLGTYNRTWESPGRILSIRPDYYALVAVGCGIEVYLVDPDTEDMLGYCFSMCTDMAMMHKEAEGKACSGMGCCVVTFRRPVRAFRVSITQREATQPFQVANASTIKVFLSEEYTTYHYNFTIGDLLSDEINETTVASTSAYLLTIIADQPNCTIAQKDPERRDRVTVMAMATPAVDEGSSGGYGAASVVDEPWTKNSTAVAVDEDRGQGGRGPPRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0364400 | RBH | 0.703322 | 1.131324 | 0.945223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g26240 | RBH | 0.299334 | 0.325837 | 0.135796 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0364400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016990 | RBH | 0.319395 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016690 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016890 | SBH | 1.403351 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016350 | RBH | 0.043340 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016390 | RBH | 0.867338 | 0.0 | 1.817355 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0253200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016560 | RBH | 1.524353 | 0.0 | 0.318660 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0252200 | SBH | 0.2386955 | 1.5255565 | 0.0538805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016390 | SBH | 0.182340 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016440 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016250 | RBH | 0.071538 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016650 | RBH | 1.331603 | 0.0 | 0.297437 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016460 | RBH | 0.0 | 0.0 | 0.0 |
