Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0016500 | OGI:01046570 | 1/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:15292889-15293461 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTGCAGCTGCTATGCTACTAGCCACCATGCGCCTTGTGATGATGAGCCTCACCATCCGGTGGCCATCAAGAGGAGCGCCTCCCTCAGCCGAGGATCTTGCTCACTGCCCCAAGACCTGTGGGGAAGCCAACATCTCCTATCCCTTCGGAATCGGGAAGGCTGCTTCCGACCAGGTGGTGGTTTCGAGCTAACATGCGAACACACCACCACCTATCCTCCCAAGCTCCTCTTGGGTAGCACCACGCGGAGATTCACGACGCATTGTCTGAAGGCGGGCACGTTAATGCTTCCGTCATCTTCAACATCGCCACCAGTACCACGCCTGGTGTGGTACGCACCTACAATAGGTCATGGGAAGCTCCCAGCAGGAGTCTTTCCGTCAGATACGGCAACGAACTCGTCATCATCGGCTGTGGAATCGAGGTCCACATGTTCGACACCGATACCGACGACCTCTTGGGGTATTGTTCAAGCTTGTGTGACGGCATCGCGGTCATGGAGAAGGAGGCGGTGGGAGTGAGCTGCAGCGGCATGGGCTACTGCAGTATCTCCTTCCGAAGAACTACTAG
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| CDS seq | ATGGGTGCAGCTGCTATGCTACTAGCCACCATGCGCCTTGTGATGATGAGCCTCACCATCCGGTGGCCATCAAGAGGAGCGCCTCCCTCAGCCGAGGATCTTGCTCACTGCCCCAAGACCTGTGGGGAAGCCAACATCTCCTATCCCTTCGGAATCGGGAAGGCTGCTTCCGACCAGCACCACGCGGAGATTCACGACGCATTGTCTGAAGGCGGGCACGTTAATGCTTCCGTCATCTTCAACATCGCCACCAGTACCACGCCTGGTGTGGTACGCACCTACAATAGGTCATGGGAAGCTCCCAGCAGGAGTCTTTCCGTCAGATACGGCAACGAACTCGTCATCATCGGCTGTGGAATCGAGGTCCACATGTTCGACACCGATACCGACGACCTCTTGGGGTATTGTTCAAGCTTGTGTGACGGCATCGCGGTCATGGAGAAGGAGGCGGTGGGACGGCATGGGCTACTGCAGTATCTCCTTCCGAAGAACTACTAG
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| Protein seq | MGAAAMLLATMRLVMMSLTIRWPSRGAPPSAEDLAHCPKTCGEANISYPFGIGKAASDQHHAEIHDALSEGGHVNASVIFNIATSTTPGVVRTYNRSWEAPSRSLSVRYGNELVIIGCGIEVHMFDTDTDDLLGYCSSLCDGIAVMEKEAVGRHGLLQYLLPKNY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0016500 | OsIR64_01g0016500.01 | Chr01 | 15292889 | 15293461 | + | NAM | ||
| CDS seq | ATGGGTGCAGCTGCTATGCTACTAGCCACCATGCGCCTTGTGATGATGAGCCTCACCATCCGGTGGCCATCAAGAGGAGCGCCTCCCTCAGCCGAGGATCTTGCTCACTGCCCCAAGACCTGTGGGGAAGCCAACATCTCCTATCCCTTCGGAATCGGGAAGGCTGCTTCCGACCAGCACCACGCGGAGATTCACGACGCATTGTCTGAAGGCGGGCACGTTAATGCTTCCGTCATCTTCAACATCGCCACCAGTACCACGCCTGGTGTGGTACGCACCTACAATAGGTCATGGGAAGCTCCCAGCAGGAGTCTTTCCGTCAGATACGGCAACGAACTCGTCATCATCGGCTGTGGAATCGAGGTCCACATGTTCGACACCGATACCGACGACCTCTTGGGGTATTGTTCAAGCTTGTGTGACGGCATCGCGGTCATGGAGAAGGAGGCGGTGGGACGGCATGGGCTACTGCAGTATCTCCTTCCGAAGAACTACTAG
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| Protein seq | MGAAAMLLATMRLVMMSLTIRWPSRGAPPSAEDLAHCPKTCGEANISYPFGIGKAASDQHHAEIHDALSEGGHVNASVIFNIATSTTPGVVRTYNRSWEAPSRSLSVRYGNELVIIGCGIEVHMFDTDTDDLLGYCSSLCDGIAVMEKEAVGRHGLLQYLLPKNY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0364400 | SBH | 0.703322 | 1.131324 | 0.945223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g26310 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0365000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016890 | SBH | 1.403351 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016340 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016380 | SBH | 2.479559 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0251600 | SBH | 0.888267 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0248600 | SBH | 0.876706 | 0 | 0.0154385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016390 | SBH | 0.182340 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016350 | SBH | 0.070616 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016600 | SBH | 1.865435 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016250 | SBH | 0.071538 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016690 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016440 | SBH | 0.280651 | 0.0 | 0.518803 |
