Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0019700 | OGI:06079200 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg156:117645-119988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTATTTCCACTATGGAATATAGAGCGGACTAGTAGAAGAAAAAAAATCCTATTTAGGATAATAATTGGATAACAGAGCCTCTACCCTGTCAACGGATAGCGAGAGAACAAAATCTGGATAAATACCGATTCCTATTACTGGTAAAAAGATACAGATTAAAAGAAAGAGTTCTCGCGGGCCGGAATCCTCAAAATTTTCGTTTGGAACATGAAATAGCTTGTATCCATAGAACATCTGTCGTAACATAGATAATAAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTAATTAGCATTTTTGGCATTAACAGAAATTTTGGACTAGTAATTAGTCCAAAAAATACTACTAATTCCGCAACAAAACCACTCATTCCTGGTAAGGCAAGAGAAGCCATTGAAAAGCTACTAAACATGGTAAAAATTTTTGGCATTGGGATAGAAACCCCTCCCAGTTCTTCGAGATAAACAAGGCGCATTCTATCACAAGCCGTTCCCGCTAAGAAAAAAAGTGTAGCCCCAATAAATCCATGGGATAATATTTGTAAAATAGCTCCATTGAGTCCAATGTTGGTTATGGAACCAATTCCTATAATAATGAAACCCATGTGAGAGACGGAGGAGTAGGCTATTCTTTTTTTGAAATTGCGTTGGCCAAGAGAAGTTGAAGCTGCATAGATTATTTGCATCGCTCCTATTATTACTAACCAAGGGGAAAATAGATAATGAGCATGAGGTAACAATTCCATATTGATCCGAATCAATCCGTATGCTCCCATCTTTAATAGGATTCCCGCTAAAAGCATACATGTACTGTAATGCGCTTCCCCATGGGTATCTGGTAACCACGTATGTAGGGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATAAAATAGTATTTCCAATGTTGCAGGGTATGATTGATTAATTAATCTTTCCAAATCTAATCTTGGTTCGTTGGAACCGTATAAGCCCATACCTAGAACTCCGATTAAGAAAAAAATGGAACCACCTGCAGTATACAAAATAAACTTTGTAGCTGAATAGAGACGCCTCTTCCCCCCCCACATGGATAAAAGTAAGTAAACAGGAATTAATTCTAACTCCCACATGATAAAAAAAAGTAAAAGGTCTCGCGAAGAAAATAATCCTATTTGACCGCTATACATTGCTAGCATCAGGAAATAGAATAATCGGGAATTCCGGGTAACCGGCCAAGCTGCTAAAGTAGCTAAAGTAGTCATAAATCCTGTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATTGAAGACATCTATCCATTTAGAATCCTCTTTTAATTGGATTAAGGGATCCTCCAATTGGAAATGATAACAGAATGCATAAGTCATTAGAAGGAATTCTAATAAACAAATAGACATAGTATACCACCTAACGATTTTGTTTCCCCTATGAGGTAAAAAGAAAATTAATGAACCCGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAAGAACTCATGATAAAGTGATAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCGATTATTTTGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAATTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTCTCAGGTCCTAAATAAACGCGGACACTTAAAAAATCTGTTGGGCAGGCGGATTCGCATCTCTTACAACCCACACAATCTTCGGTTCTTGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCATTTCTAATACATCTGTTGGACAAGCTCGTACACATTGAGTGCATCCTATACATGTATCATAAATTTTTACGGAATGTGACATTGGATCTATAAATTTTCCTTTTCAACATAAAAATTTTCGATCTGGTCAAAATGAAATTAGTACTATATCAATCAAATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAACAAATAATGCAATATATTTCTTAATCCGTTTGTGAGAAAGCATGAAAAGAGCCAAGAGACTTTAATTTTGGGCTTCAACAATCATAATTATACGAATTGTATATACGAATTCGAATTAGCCAATAAATTGGCTATCGTCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATTCAACTAAGTAAAAAAGAATACTATGGAATAACCTACTCAAAAAATAGATATTCTCAAATAATAAATAGTATTCATGTTAATATTTCATATTATTATTATATGTGTCCCTT
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| CDS seq | ATGAGTTCTTTTCCTTGGTTAACAATACTTGTTGTTTTGCCGATATTTGCGGGTTCATTAATTTTCTTTTTACCTCATAGGGGAAACAAAATCGTTAGGTGGTATACTATGTCTATTTGTTTATTAGAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
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| Protein seq | MSSFPWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTMSICLLEFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK |
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| Function | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic [UniProtKB/Swiss-Prot:P0C325] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0019700 | OsLiXu_Ung0019700.01 | ChrUN-Ctg156 | 117645 | 119988 | - | NAM | ||
| CDS seq | ATGAGTTCTTTTCCTTGGTTAACAATACTTGTTGTTTTGCCGATATTTGCGGGTTCATTAATTTTCTTTTTACCTCATAGGGGAAACAAAATCGTTAGGTGGTATACTATGTCTATTTGTTTATTAGAATTCCTTCTAATGACTTATGCATTCTGTTATCATTTCCAATTGGAGGATCCCTTAATCCAATTAAAAGAGGATTCTAAATGGATAGATGTCTTCAATTTCCACTGGAGATTGGGAATCGATGGACTTTCATTAGGATCTATTTTATTGACAGGATTTATGACTACTTTAGCTACTTTAGCAGCTTGGCCGGTTACCCGGAATTCCCGATTATTCTATTTCCTGATGCTAGCAATGTATAGCGGTCAAATAGGATTATTTTCTTCGCGAGACCTTTTACTTTTTTTTATCATGTGGGAGTTAGAATTAATTCCTGTTTACTTACTTTTATCCATGTGGGGGGGGAAGAGGCGTCTCTATTCAGCTACAAAGTTTATTTTGTATACTGCAGGTGGTTCCATTTTTTTCTTAATCGGAGTTCTAGGTATGGGCTTATACGGTTCCAACGAACCAAGATTAGATTTGGAAAGATTAATTAATCAATCATACCCTGCAACATTGGAAATACTATTTTATTTTGGCTTCCTTATTGCTTATGCTGTCAAATTGCCGATTATACCCCTACATACGTGGTTACCAGATACCCATGGGGAAGCGCATTACAGTACATGTATGCTTTTAGCGGGAATCCTATTAAAGATGGGAGCATACGGATTGATTCGGATCAATATGGAATTGTTACCTCATGCTCATTATCTATTTTCCCCTTGGTTAGTAATAATAGGAGCGATGCAAATAATCTATGCAGCTTCAACTTCTCTTGGCCAACGCAATTTCAAAAAAAGAATAGCCTACTCCTCCGTCTCTCACATGGGTTTCATTATTATAGGAATTGGTTCCATAACCAACATTGGACTCAATGGAGCTATTTTACAAATATTATCCCATGGATTTATTGGGGCTACACTTTTTTTCTTAGCGGGAACGGCTTGTGATAGAATGCGCCTTGTTTATCTCGAAGAACTGGGAGGGGTTTCTATCCCAATGCCAAAAATTTTTACCATGTTTAGTAGCTTTTCAATGGCTTCTCTTGCCTTACCAGGAATGAGTGGTTTTGTTGCGGAATTAGTAGTATTTTTTGGACTAATTACTAGTCCAAAATTTCTGTTAATGCCAAAAATGCTAATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTATGTTACGACAGATGTTCTATGGATACAAGCTATTTCATGTTCCAAACGAAAATTTTGAGGATTCCGGCCCGCGAGAACTCTTTCTTTTAATCTGTATCTTTTTACCAGTAATAGGAATCGGTATTTATCCAGATTTTGTTCTCTCGCTATCCGTTGACAGGGTAGAGGCTCTGTTATCCAATTATTATCCTAAATAG
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| Protein seq | MSSFPWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTMSICLLEFLLMTYAFCYHFQLEDPLIQLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWPVTRNSRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIGVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYLEELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDFVLSLSVDRVEALLSNYYPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 183.357758 | 0.0 | 60.051617 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g067809A | SBH | 57.876099 | 62.991142 | 36.943836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46435 | SBH | 48.658710 | 48.207439 | 11.176375 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026300 | SBH | 154.927185 | 28.674225 | 193.346512 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006780 | SBH | 15.564863 | 8.975279 | 37.378174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007730 | SBH | 58.976830 | 9.181514 | 48.375618 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009960 | SBH | 126.473465 | 2.146509 | 44.857071 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021420 | RBH | 192.702103 | 0.0 | 63.500420 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015401 | SBH | 322.471252 | 5.319046 | 260.323944 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004730 | RBH | 249.024536 | 100.564789 | 261.998260 |
