Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007920 | OGI:11019850 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7028913-7031929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagttgagcagcgcggcattccaggcattccgctgctgcagatagtcgtccattgtataaagttcggttggatcaatttcaatatcatgagggaaatctcttcttcactttcagacattgctatgtacatgcaagcaaaatttgtgtaaattaacgcaacatataaatgaaattgtgcacaataacccaacatagcaaaaatgtgcacaacccacaaagtaaaattgcgcacatacgaactcagtacttcatatcctagtaaatgaagtgaaagcatgcatgaagcatattgtcgtctgaatgaagcaaatagtagtattcctaggagactagtgctacacaaaatcaaggggacaaatggtacacaaagtcatgcacttcacatagtataggagacaagaacatgcattgtcacatcatatttaatatacaaaaatgaaatacaaatgtagtaccttatcaaattgattaatcccaccacacagatatgattaatcccaacagctaacaataatccagaacaatgttaatatcagaacaatttcacaatgaaaattccatcacaatttcacaacaccaataccagagcaatttcacaatatcaatccaagagcaattcactcatagcacatcacatatatagtagttcctccaagcatcaatacagcagttgttcaaagtcataattatcaagtaccatactactggtctgaattttctattacaccataatttaaagtgtcaactaccaccagcttgcaaacagttcttgtaggacaacacaaaataacttgcagtaaagagtaagatcctccatctacatgtagcactgacatgtatgctatatcacccattaacaagtaaccctcatctacaagtaaccctcacatgactcatctaactctcccccatccacaagtaaagaccattaactaaaagcctacaaaaaaggtgccattgcactgcatcagagattgacatgcatcatgtactaactcccaactcgacaagtaattccacacaagatttcacatgaagcttccaaaaaggtgcccttgcactccatcctgcagcaaacaatgtgaacacaaatgcaaaagattttagtcccctaacaatgtgaacacaaatgcaacagattttagtccacctaacaatgtgaacacaaatgcaaaagatctgaaatgatccaacttatttacttacccttcactcctcagtagcccccttgccccacagctggtctgacatcagtgtacatgccttgatatgagcctctctagcccatgtctccatacggcttgtgtccacagaaatcatctgtgtaaacctctcaagcaacttagtatgctgctcaatcaacctgccctttgtcttctcctgagcagccttgagtaggacgttggctgcctcaagcttctcctcagacagcttctgctggaactccttcatctcagctgtctcatcttcttgctttgcatgggacttgcacagagacttgatcagctctttcacctcttcagagtagtcagtctgcttgcccatcttggccctcttgatacccataggcctgacctgagccggctgctcaaccggtggtgcattcacatcaaactcagccctaatcttggtagttccatgacccagcagagtaacatgagcattccactttggggaatcacacacggccttccaccaatacatcagtgcgaatggctgaccaactcgactctcatacattgtcaaagcttgctcaatcagcatctcttcagaccttccactctgatagttatctctcagctgaacatataccccattgaaggcagagaccttcttggtgttcttgtgccaatggcccttgaggtgcttggggtccctcttcctctcttcttctgtggttgagttgtatgtagctgcaacttgcttccaataagtgtcacctttccttgaattaccctcaattacatcagtagaattctccagccaagcacttacctgcacaccataaattgctcaagctatatacaacaaattaattcatcatgctaataacatcacaagtcattaacataaaacaatgatgttctatcagccataaggaaacaagtttcatcaacaaaaagccaactttaacccacaatcagtaaataacaatgctacatacatatccttagctGttccatacatacccttgtttaacccacaatcaataaataacaatgctacatacatatccttaactgttccatacatacccttgataaaacataactcagcacatcaagccacaagatatttgcctaccacaaacatttcatttatagctgggacacatcacaaccaaagaacatatacatatacaacctgcatgaatcacaatggaaatttgtacttccttgccaccaaaatagagatcttgtgctaccatggatcattcatgttctctaaacagcatacaaatcaatttttctgtacgcataacaatctattcatgtactctaaaccacatgcaaatcaatttttctataccattctaatgcatatcaaccagtatcacaacatttcatccatcttttctccatgtccccatacaacacaattttttctacatctagttcagatctgagaatgaaaaaattagatgagaccaaagattcttaccaggcgtaggtcctcatcccgagtgtagtacatcctacccctcccatcatcttgtccagcaggatttgcttgcacacgctgcctcaccctggatctggtggctgcagtccggccaccattcactgctactgttgttggtggctgcgtcgagaagagcgggaaCtggccatgagcataggggaagtcctcactgggttgagaaaaatctccttgggttgctgcttcaccgaaaggatgggccagatctggatccttcaagaaatcatagtacccacttgagcgcatcggatccatgaagctgcaagacaaagaaatcaaaacccatcaatacaaccaccaagaacatgcggtccat
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| CDS seq | atggaccgcatcttcatggatccgatgcgctcaagtgggtactatgatttcttgaaggatccagatctggcccatcctttcggtgaagcagcaacccaaggagatttttctcaacccagtgaggacttcccctatgctcatggccaGttcccgctcttctcgacgcagccaccaacaacagtagcagtgaatggtggccggactgcagccaccagatccagggtgaggcagcgtgtgcaagcaaatcctgctggacaagatgatgggaggggtaggatgtactacactcgggatgaggacctacgcctgagtggaaggtctgaagagatgctgattgagcaagctttgacaatgtatgagagtcgagttggtcagccattcgcactgatgtattggtggaaggccgtgtgtgattccccaaagtggaatgctcatgttactctgctgggtcatggaactaccaagattagggctgagtttgatgtgaatgcaccaccggttgagcagccggctcaggtcaggcctatgggtatcaagagggccaagatgggcaagcagactgactactctgaagaggtgaaagagctgatcaagtctctgtgcaagtcccatgcaaagcaagaagatgagacagctgagatgaaggagttccagcagaagctgtctgaggagaagcttgaggcagccaacgtcctactcaaggctgctcaggagaagacaaagggcagaagagatttccctcatgatattgaaattgatccaaccgaactttatacaatggacgactatctgcagcagcggaatgcctggaatgccgcgctgctcaactag
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| Protein seq | MDRIFMDPMRSSGYYDFLKDPDLAHPFGEAATQGDFSQPSEDFPYAHGQFPLFSTQPPTTVAVNGGRTAATRSRVRQRVQANPAGQDDGRGRMYYTRDEDLRLSGRSEEMLIEQALTMYESRVGQPFALMYWWKAVCDSPKWNAHVTLLGHGTTKIRAEFDVNAPPVEQPAQVRPMGIKRAKMGKQTDYSEEVKELIKSLCKSHAKQEDETAEMKEFQQKLSEEKLEAANVLLKAAQEKTKGRRDFPHDIEIDPTELYTMDDYLQQRNAWNAALLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007920 | OsLiXu_11g0007920.01 | Chr11 | 7028913 | 7031929 | - | NAM | ||
| CDS seq | atggaccgcatcttcatggatccgatgcgctcaagtgggtactatgatttcttgaaggatccagatctggcccatcctttcggtgaagcagcaacccaaggagatttttctcaacccagtgaggacttcccctatgctcatggccaGttcccgctcttctcgacgcagccaccaacaacagtagcagtgaatggtggccggactgcagccaccagatccagggtgaggcagcgtgtgcaagcaaatcctgctggacaagatgatgggaggggtaggatgtactacactcgggatgaggacctacgcctgagtggaaggtctgaagagatgctgattgagcaagctttgacaatgtatgagagtcgagttggtcagccattcgcactgatgtattggtggaaggccgtgtgtgattccccaaagtggaatgctcatgttactctgctgggtcatggaactaccaagattagggctgagtttgatgtgaatgcaccaccggttgagcagccggctcaggtcaggcctatgggtatcaagagggccaagatgggcaagcagactgactactctgaagaggtgaaagagctgatcaagtctctgtgcaagtcccatgcaaagcaagaagatgagacagctgagatgaaggagttccagcagaagctgtctgaggagaagcttgaggcagccaacgtcctactcaaggctgctcaggagaagacaaagggcagaagagatttccctcatgatattgaaattgatccaaccgaactttatacaatggacgactatctgcagcagcggaatgcctggaatgccgcgctgctcaactag
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| Protein seq | MDRIFMDPMRSSGYYDFLKDPDLAHPFGEAATQGDFSQPSEDFPYAHGQFPLFSTQPPTTVAVNGGRTAATRSRVRQRVQANPAGQDDGRGRMYYTRDEDLRLSGRSEEMLIEQALTMYESRVGQPFALMYWWKAVCDSPKWNAHVTLLGHGTTKIRAEFDVNAPPVEQPAQVRPMGIKRAKMGKQTDYSEEVKELIKSLCKSHAKQEDETAEMKEFQQKLSEEKLEAANVLLKAAQEKTKGRRDFPHDIEIDPTELYTMDDYLQQRNAWNAALLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0303800 | SBH | 0.095997 | 0.279061 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14160 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0303800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005110 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004810 | SBH | 0.364004 | 4.181863 | 1.880294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005130 | SBH | 0.032445 | 0.152369 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011160 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0274600 | SBH | 0 | 0 | 0.0298045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015170 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0306200 | SBH | 0 | 0 | 0.5092935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011000 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010870 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011380 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011190 | SBH | 0.0 | 0.0 | 0.0 |
