Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0011080 | OGI:09025750 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:16128972-16132066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagttagttaagatgatgaagatggcagttagatgggggatggccgccttggacgatggcaagtgtagtgttttgctggcttttggcgtctatgggaaagaatcagttgtaggataaagactttcttttggtgtacatatagctggaatagcctagtccaactatgtgatgtggacttgaactctattaagatgacttatgttgctgaacctaatgtttatatgcaagtaatgtggacttatgttgctgatgccttggtgatgaagtgaactgaagtcaattgctatgtacatagtggtcaacctttatttatttacattaacatgtccattattttgttgacattgaaccatgggcaccattgttgaccttattgctactagaacaattgaagctgtcattgacatgacctttatttaagtagacaacttgtgtagccaccttatttaactaccttatttaactagccttatttaactagctaggcttattgaatttatttaactagacttatttaatttatttagctaggcttattgaatttatttaactaggcttattgaactaagtaaactagacttattcaacttatttaactacttggtcaaaatgaccttatttgttttgaccttacttgctcaacttgtcgagaggatagcatacttctgctcctagctgccacttgtgcttcccctatggtaggtccatatgtgctccattaaatctttcttcagtctgttgtgtacagaagcatcatgaacttcacaatcagtagatatcacttgagcaaatgctcgtggcacgctgttggtgtactccggcgattgaacttcaaattcacccggatcgtcatttaaatcgagcacatccatatccctctcgtcttcgataatcatgttgtgcattatgatgcacgccctcattatcagcccaatgtcagactctttccataatttacatggcacagcaataattttgaaccgggccttgagtatgccaaaagcgcattcgacatcctttctttgggactcttgccatcttgcaaatagttgttgtttccttgtttgtggaagcttgatggacttcacaagagtcgcccattctgggtaaattccatcggcgaggtagtatcccttgttatactggtgaccattgacaatgaagttgattctcggagctctaccccacaacaaatccgtgaaaaccggagattggtttatcacgttgatgtcgttattggaacccgctgcaccaaaatatgcatgccaaatccagcgatcataagatgcaacggcctccaaaataattgtagcagtcccatagtcaccccttgtatacatccctttccacccgttagggcaattcttccacttccaatgcatgcagtcaatgcttcctagcataccgggaaatccatttgcaccatgcatttgcaagagacgctcagtgtcatcaaccgttggggatctcatatattctcctcaagcttctcctcagacagcttctgctggaactccttcatctcagctgtctcatcttcttgctttgcatgggacttgcacagagacttgatcagctctttcacctcttcagagtagtcagtctgcttgcccatcttggccctcttgatactcataggcctgacctgagccggctgctcctcaaccggtggtgcattcacatcaaactcagccctaatcttggtagttccatgacccagcagagtaacatgagcattccactttggggaatcacacacggccttccaccaatacatcagtgcgaatggctgaccaactcgactctcatacattgtcaaagcttgctcaatcagcatctcttcagaccttccactctgatagttatctctcagctgaacatataccccattgaaggcagagaccttcttggtgttcttgtgccaatggcccttgaggtgcttggggtccctcttcctctcttcttctgtggtcgagttgtatgtagctgcaacttgcttccaataagtgtcaccttttcttgaattaccctcaattacatcagtagaattctccagccaagcacttacctgcataccataaattgctcaagctatatacaacaaattttttctacatgctaataacatcacaagtcattaacataaaacaatgatgttctatcagccataaggaaacaagtttcatcaacaaaaagccaactttaacccacaatcagtaaataacaatgctacatacatatccttagctgttccatacatacccttgtttaacccacaatcaataaataacaatgctacatacatatccttaactgttccatacatacccttgataaaacataactcagcacatcaagccacaagatatttgcctaccacaaacatttcatttatagctgggacacatcacaactaccaaagaacatatacatatacaacctgcatgaatcacaatggaaatttgtacttccttgccaccaaaatatagatcttgtgctaccatggatcattcatgttctctaaacagcatacaaatcaatttttctgtacgcataacaatctattcatgtactctaaaccgcatgcaaatcaatttttctataccattccaatgcatatcaaccagtatcacaacattttcatccatcttttctccatgtccccatacaacacaattttttctacatctagttcagatctgagaatgaaaaaaattagatgagaccaaagattcttaccaggcgtaggtcctcatcccgagtgtagtacatcctacccctcccatcatcttgtccagcaggatttgcttgcacacgctgcctcaccctggatctggtggctgcagtccggccaccattcactgctactgttgttggtggctgcgtcgagaagagcgggaactggccatgagcataggggaagtcctcactgggttgagaaaaatctccttgggttgctgcttcaccgaaaggatgggccagatctggatccttcaagaaatcatagtacccacttgagcgcatcggatccatgaagctgcaagacaaagaaatcaaaacccatcaatacaaccaccaagaacatgcggtccat
More
|
||||||||||
| CDS seq | atggaccgcatcttcatggatccgatgcgctcaagtgggtactatgatttcttgaaggatccagatctggcccatcctttcggtgaagcagcaacccaaggagatttttctcaacccagtgaggacttcccctatgctcatggccagttcccgctcttctcgacgcagccaccaacaacagtagcagtgaatggtggccggactgcagccaccagatccagggtgaggcagcgtgtgcaagcaaatcctgctggacaagatgatgggaggggtaggatgtactacactcgggatgaggacctacgcctgctgagagataactatcagagtggaaggtctgaagagatgctgattgagcaagctttgacaatgtatgagagtcgagttggtcagccattcgcactgatgtattggtggaaggccgtgtgtgattccccaaagtggaatgctcatgttactctgctgggtcatggaactaccaagattagggctgagtttgatgtgaatgcaccaccggttgaggagcagccggctcaggtcaggcctatgagtatcaagagggccaagatgggcaagcagactgactactctgaagagacgccaaaagccagcaaaacactacacttgccatcgtccaaggcggccatcccccatctaactgccatcttcatcatcttaactaactga
More
|
||||||||||
| Protein seq | MDRIFMDPMRSSGYYDFLKDPDLAHPFGEAATQGDFSQPSEDFPYAHGQFPLFSTQPPTTVAVNGGRTAATRSRVRQRVQANPAGQDDGRGRMYYTRDEDLRLLRDNYQSGRSEEMLIEQALTMYESRVGQPFALMYWWKAVCDSPKWNAHVTLLGHGTTKIRAEFDVNAPPVEEQPAQVRPMSIKRAKMGKQTDYSEETPKASKTLHLPSSKAAIPHLTAIFIILTN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0011080 | OsLima_09g0011080.01 | Chr09 | 16128972 | 16132066 | - | NAM | ||
| CDS seq | atggaccgcatcttcatggatccgatgcgctcaagtgggtactatgatttcttgaaggatccagatctggcccatcctttcggtgaagcagcaacccaaggagatttttctcaacccagtgaggacttcccctatgctcatggccagttcccgctcttctcgacgcagccaccaacaacagtagcagtgaatggtggccggactgcagccaccagatccagggtgaggcagcgtgtgcaagcaaatcctgctggacaagatgatgggaggggtaggatgtactacactcgggatgaggacctacgcctgctgagagataactatcagagtggaaggtctgaagagatgctgattgagcaagctttgacaatgtatgagagtcgagttggtcagccattcgcactgatgtattggtggaaggccgtgtgtgattccccaaagtggaatgctcatgttactctgctgggtcatggaactaccaagattagggctgagtttgatgtgaatgcaccaccggttgaggagcagccggctcaggtcaggcctatgagtatcaagagggccaagatgggcaagcagactgactactctgaagagacgccaaaagccagcaaaacactacacttgccatcgtccaaggcggccatcccccatctaactgccatcttcatcatcttaactaactga
More
|
|||||||
| Protein seq | MDRIFMDPMRSSGYYDFLKDPDLAHPFGEAATQGDFSQPSEDFPYAHGQFPLFSTQPPTTVAVNGGRTAATRSRVRQRVQANPAGQDDGRGRMYYTRDEDLRLLRDNYQSGRSEEMLIEQALTMYESRVGQPFALMYWWKAVCDSPKWNAHVTLLGHGTTKIRAEFDVNAPPVEEQPAQVRPMSIKRAKMGKQTDYSEETPKASKTLHLPSSKAAIPHLTAIFIILTN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004810 | SBH | 0.364004 | 4.181863 | 1.880294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0260100 | RBH | 0.0156275 | 0 | 0.01738 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0249100 | RBH | 0 | 0 | 0.039835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011190 | RBH | 0.0 | 0.0 | 0.0 |
