Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g14160 | OGI:11022850 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:7899834-7901863 | ||||||||
| Gene Symbol | MSL38, OsMSL38 | ||||||||||
| DNA seq | TATATTAAAAACATACCTCAATTATCTTTAGCAAACAAAGCCAATCTCATACACTCCAATGTTTTGGATCTCTCAGCCAAAGCTTCTTCACTAAGAGCAGGTACAATAGCAGGCTATTAGCCAGCTATAAATATATTTTAATGAGATAAATAATAAGAGAGAAGAGCAGCAGACTACAGATTTGTAGCCAGCTGTAGCACAGGCTCCAAGATGCAATATGTGTATGGCAGGTGGGACCATATATTAATATTATAGGAAGCAACATTGTATAAATTAGCTATTAGATTGGCTATAGATGAATTGGAGCTAGTAGTGGGCTATAGTATTGAACTTTCTCTAAGATCACTTGTGGGAGCTAGCAGTAAGTCTTTGTAAAGGTCAATCATTTTACTCTTTGTTTGTTCCTGAGCTGCTTTATGATTAAGGTTGGCTACTTCTAGCTTCTTATTTGCCAAACTTTGTTGTACCTCTCCTATCTTCTCAGCCTTGCTGCTTGCTTCAATGAATTTATCTAGTTTCTGGTCAATAACAGAAATAGCCTCTGATGCCAGACGTTTTCCGCTGCGTTCATCTTTGGCCTTCTTATGCCTAATAGGACGCAGTTTTGGAGCATCTTCGACATTCACAACATGAGTTGGGTTAGAAGTTATACTCTTGTACTTTTCCTTGTTAATTTTCTTCAAATATGTAGACCACTTTTTCTCATGCCGTAATATCCTCCATACATGCACCATTGTGAAAGGCTTGTCATTATGTTCAGAGGCATATAGCTGGAATGCTTGGTCCATCTTTTGGTCTTCACTCATACCACTTTGATGTATTTTAGTGATTCTTGCATAGCAACCATTGAATTCGGAGACTGGTTTCTTAATGCGCTCCCAACGTTGCTTCAACTGGTTACGATTTCTCATACGGTTACTCTTAGTGGTACTGTTGTATGTAGCAGTAACATCTAACCAATATTGATATGACTTCTTATCATTTCCATTGATCGGGTCAATTGAATTGTGCAGCCAAGCACTAGCCTACAATTAGGAGAAGAATAAACCGTACCTTTAATGAAGTGCAAATAATTTTAAATGCATACAGACTGAAATCTTCAAAAAGAAACAAAGAAAATTAACTTACCAATCTAATGTCTTCTTCATTTGACCAATTCAATCGCTTCTCGGACCTAGCATCGGATCTAGCAGGCTCGATGGTGTCATCGTCCTCAATATCAATTGTTTCTTTATCTTGTGAACCTATTTGTGCTGCAGCACACCTCCCAGTTGGTGACGGTATCGCTTTAGAACATGGAGTTGTAGGTGACATTGTAGAATAACTCATTGGTGCACCAACAAAGTGGAAATTTTCTGGCAGCTGACTTGCATTATGATAGTTCACAAATGGATGTGTCTGGGTAAATGGAGAGATCTTATTACTCTGTAAATAATTTAGGAAACCACCTGGTGGATACATCTTGAAAAAGAAAACAACAAAAAAAATTAATATCTGTGTCAAGAACAGAAGTGGTGAAATACAAGCACAATATATTTCAGAAAAAAATCAGTCCCCATAAACTAGCATATATGAGTTTGACTTAAATTAATCAGGTGAATACAAGTAATTAGCAGTACCAGCTATACATCTTGCCACCGAGGCTAGCAAAAAATTCTTTAAAGTAAAAAAGTGCCAGCTATACAACACTAGATTAGCAATTCTCTGAAGCAAAAAGTTGTCAGCCTAATATAACCCATTAATTTACTAATAACATTGATTAACCTAAATCTTTGCATACAAAAATTTGCACCTTACCATTCCGAGCTACCGGGAGATGATTCCTGCCACCATGCACTGGCGGCATGAGCACCTACGGTAGGAAAGCCAGCGCCTAGAGCACTAGCTCGTAGAGCACCACAAGCAACAACAGTAGAATCTGGAGCACCGTCGGCTCCCACAACACTAGCGGCATCTGGATCAAGGGCAGTCGATTCACCGGCAGCCTGATTGGATTTGGATCGACGCATCTTCGATTCCGTCAGATTCAT
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| CDS seq | ATGAATCTGACGGAATCGAAGATGCGTCGATCCAAATCCAATCAGGCTGCCGGTGAATCGACTGCCCTTGATCCAGATGCCGCTAGTGTTGTGGGAGCCGACGGTGCTCCAGATTCTACTGTTGTTGCTTGTGGTGCTCTACGAGCTAGTGCTCTAGGCGCTGGCTTTCCTACCATGTATCCACCAGGTGGTTTCCTAAATTATTTACAGAGTAATAAGATCTCTCCATTTACCCAGACACATCCATTTGTGAACTATCATAATGCAAGTCAGCTGCCAGAAAATTTCCACTTTGTTGGTGCACCAATGAGTTATTCTACAATGTCACCTACAACTCCATGTTCTAAAGCGATACCGTCACCAACTGGGAGGTGTGCTGCAGCACAAATAGGTTCACAAGATAAAGAAACAATTGATATTGAGGACGATGACACCATCGAGCCTGCTAGATCCGATGCTAGGTCCGAGAAGCGATTGAATTGGTCAAATGAAGAAGACATTAGATTGGCTAGTGCTTGGCTGCACAATTCAATTGACCCGATCAATGGAAATGATAAGAAGTCATATCAATATTGGTTAGATGTTACTGCTACATACAACAGTACCACTAAGAGTAACCGTATGAGAAATCGTAACCAGTTGAAGCAACGTTGGGAGCGCATTAAGAAACCAGTCTCCGAATTCAATGGTTGCTATGCAAGAATCACTAAAATACATCAAAGTGGTATGAGTGAAGACCAAAAGATGGACCAAGCATTCCAGCTATATGCCTCTGAACATAATGACAAGCCTTTCACAATGGTGCATGTATGGAGGATATTACGGCATGAGAAAAAGTGGTCTACATATTTGAAGAAAATTAACAAGGAAAAGTACAAGAGTATAACTTCTAACCCAACTCATGTTGTGAATGTCGAAGATGCTCCAAAACTGCGTCCTATTAGGCATAAGAAGGCCAAAGATGAACGCAGCGGAAAACGTCTGGCATCAGAGGCTATTTCTGTTATTGACCAGAAACTAGATAAATTCATTGAAGCAAGCAGCAAGGCTGAGAAGATAGGAGAGGTACAACAAAGTTTGGCAAATAAGAAGCTAGAAGTAGCCAACCTTAATCATAAAGCAGCTCAGGAACAAACAAAGAGTAAAATGATTGACCTTTACAAAGACTTACTGCTAGCTCCCACAAGTGATCTTAGAGAAAGTTCAATACTATAG
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| Protein seq | MNLTESKMRRSKSNQAAGESTALDPDAASVVGADGAPDSTVVACGALRASALGAGFPTMYPPGGFLNYLQSNKISPFTQTHPFVNYHNASQLPENFHFVGAPMSYSTMSPTTPCSKAIPSPTGRCAAAQIGSQDKETIDIEDDDTIEPARSDARSEKRLNWSNEEDIRLASAWLHNSIDPINGNDKKSYQYWLDVTATYNSTTKSNRMRNRNQLKQRWERIKKPVSEFNGCYARITKIHQSGMSEDQKMDQAFQLYASEHNDKPFTMVHVWRILRHEKKWSTYLKKINKEKYKSITSNPTHVVNVEDAPKLRPIRHKKAKDERSGKRLASEAISVIDQKLDKFIEASSKAEKIGEVQQSLANKKLEVANLNHKAAQEQTKSKMIDLYKDLLLAPTSDLRESSIL |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g14160 | LOC_Os11g14160.1 | Chr11 | 7899834 | 7901863 | - | MSU_osa1r7 | ||
| CDS seq | ATGAATCTGACGGAATCGAAGATGCGTCGATCCAAATCCAATCAGGCTGCCGGTGAATCGACTGCCCTTGATCCAGATGCCGCTAGTGTTGTGGGAGCCGACGGTGCTCCAGATTCTACTGTTGTTGCTTGTGGTGCTCTACGAGCTAGTGCTCTAGGCGCTGGCTTTCCTACCATGTATCCACCAGGTGGTTTCCTAAATTATTTACAGAGTAATAAGATCTCTCCATTTACCCAGACACATCCATTTGTGAACTATCATAATGCAAGTCAGCTGCCAGAAAATTTCCACTTTGTTGGTGCACCAATGAGTTATTCTACAATGTCACCTACAACTCCATGTTCTAAAGCGATACCGTCACCAACTGGGAGGTGTGCTGCAGCACAAATAGGTTCACAAGATAAAGAAACAATTGATATTGAGGACGATGACACCATCGAGCCTGCTAGATCCGATGCTAGGTCCGAGAAGCGATTGAATTGGTCAAATGAAGAAGACATTAGATTGGCTAGTGCTTGGCTGCACAATTCAATTGACCCGATCAATGGAAATGATAAGAAGTCATATCAATATTGGTTAGATGTTACTGCTACATACAACAGTACCACTAAGAGTAACCGTATGAGAAATCGTAACCAGTTGAAGCAACGTTGGGAGCGCATTAAGAAACCAGTCTCCGAATTCAATGGTTGCTATGCAAGAATCACTAAAATACATCAAAGTGGTATGAGTGAAGACCAAAAGATGGACCAAGCATTCCAGCTATATGCCTCTGAACATAATGACAAGCCTTTCACAATGGTGCATGTATGGAGGATATTACGGCATGAGAAAAAGTGGTCTACATATTTGAAGAAAATTAACAAGGAAAAGTACAAGAGTATAACTTCTAACCCAACTCATGTTGTGAATGTCGAAGATGCTCCAAAACTGCGTCCTATTAGGCATAAGAAGGCCAAAGATGAACGCAGCGGAAAACGTCTGGCATCAGAGGCTATTTCTGTTATTGACCAGAAACTAGATAAATTCATTGAAGCAAGCAGCAAGGCTGAGAAGATAGGAGAGGTACAACAAAGTTTGGCAAATAAGAAGCTAGAAGTAGCCAACCTTAATCATAAAGCAGCTCAGGAACAAACAAAGAGTAAAATGATTGACCTTTACAAAGACTTACTGCTAGCTCCCACAAGTGATCTTAGAGAAAGTTCAATACTATAG
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| Protein seq | MNLTESKMRRSKSNQAAGESTALDPDAASVVGADGAPDSTVVACGALRASALGAGFPTMYPPGGFLNYLQSNKISPFTQTHPFVNYHNASQLPENFHFVGAPMSYSTMSPTTPCSKAIPSPTGRCAAAQIGSQDKETIDIEDDDTIEPARSDARSEKRLNWSNEEDIRLASAWLHNSIDPINGNDKKSYQYWLDVTATYNSTTKSNRMRNRNQLKQRWERIKKPVSEFNGCYARITKIHQSGMSEDQKMDQAFQLYASEHNDKPFTMVHVWRILRHEKKWSTYLKKINKEKYKSITSNPTHVVNVEDAPKLRPIRHKKAKDERSGKRLASEAISVIDQKLDKFIEASSKAEKIGEVQQSLANKKLEVANLNHKAAQEQTKSKMIDLYKDLLLAPTSDLRESSIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0246300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0246300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008860 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008700 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008800 | RBH | 7.593043 | 37.862740 | 60.696316 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0119500 | RBH | 1.4879825 | 3.436806 | 0.0465375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008820 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0123600 | RBH | 4.477366 | 13.308994 | 0.0402155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008890 | RBH | 0.0 | 0.193319 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008750 | RBH | 0.0 | 0.0 | 0.749391 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008900 | RBH | 0.0 | 1.424430 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008940 | RBH | 0.000000 | 0.0 | 1.419479 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008800 | RBH | 0.0 | 0.0 | 0.0 |
