Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_04g0015890 OGI:04069740 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr04:24717220-24722550
Gene Symbol OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2, SERK2
DNA seq

tccgtatcagccgttgcatatgccatggtccttgttttttcagataaagagttgagtttactaccagtatagtttttcaacgaagagtaacaagtagtacaggcgggcacagggtgacccgggagaccaaaaaagattgcctaggatgtttagcaccgtcaaaagagagagttgtacgtacaatacagcagagagaggcatcagttgttcagccattacagacgcagagccgccacaacaatgtgttgcaattccgcccggccatgcatttctaacgacaaccaagtgcagagcctacttgaaaattaccgaggcaccagggagggttacaagtaaaccatttttccctccagatttgccagctatcgatctgtctgtcatatacacaaacaagggcgaggaagccgtcgagcaaaggttggatgttttgtgattttgtctttcgtttcttttacctcgggccggacagctccattgcccgaagattgtaggtcgagtcgacgatccagtcgttgtggcggggggccagctccgcctcctgccggaccacctccaccttctgccactcctcccaccgctccgcgaggccgtcgccctccagcatcctcaccacctccgacatcttgggccggtccatcggggagccctgcgtgcagagcagagccacctggatgagtgactccacctcatgctccacgaagccgctctggaggtccgggtccaccagcatctccaccttcttctctttcaggagccctttcacctgaaaagacaaaaaccagtttagttacttgcctgtcagtttccaaatgtagtagtacaaaatttcgctaagtcatgcgtgcagatggatcatgtctcggtatcagaaatggcgaaaaactagctgccaatttgtcatggcgtgcatctccataattgatgacacatggagactgaactgccagctcgctttatcactgccaacagtccaataatttcaaccatttattctaattcttggactagaaccgagacacagctaagaaagatgtgtcctggaggacaactatcatgcacaaggaaaaacaaaaccaaaacttccatggttgccccaatatataaagatgtggtggtacttacccaatcaagcaacatcacatcgtcatcgtttgcaagacgagcaagatcaaatgccctttgtcctgtaatgagctcaagaagcatgattccatagccaaaaacatcagtcttctcagaggacttcccagtagagaggtactcaggagcaatgtgtccgatcgtcccacgaacagctgtggttacatgagtgtccttgtaatccataagtttggccagtccaaagtcacccacgactgcctcaaagtcttcatccaacagaatatttgcagctttgacatcacgatgaatgatcttgggatcacaatggtcgtgcaagtaggacaatcctctggcagatcccagcgcaatccgagttcttgtttgccattcaagtggtggatcatttggctgccgctctacaaaatcatataccacaagtcaaaaactgaaataattaatttatgggcgtgcattttttagatgaaggcatgtatttattccagattctgcagaaggcatgcactcaaccattcattattacggtcttaatcatagtcttaaatgaacaatgtgatatgtcaactgaaacaactaggtatatgctgtgagtagatgaaattaaaaaagtgcttaagtgatttcaataaccataatagctgtgccatttatgtttaagcatgcaaacaaacgtgtaagaaactattaatggattaactctaagaaaaagtaaggaagattaaggcacctcgcaatcgtgatgcgacactcccgttagccatgtagggatagacaagtaaccgttctgtaggcgtcatgcaaaatccacgaagccgaagcaggttcctatgcaccgccatgctaatcatttcaacttctgtttggaactggagctcaccaccaggggtacgttcttcttttaatcttttcactgctaccaacgagccatctgccaatctacccttgtacacctttccaaagccacctcttcccagaatattcttattgctaaagttatcagtagcaacttgaagctcccggagtgagaatctcttaagttggccaaggtgcacttccggatcctcctcagctgaatttaaaggagaatatagattatttaaatggataacataagtatcatgaactgcagtatgcaactataataccaaccagggacatcaaagaagtgttcttcaggtttacgccgccgccaccatgcaaatccaattgccggaaccgcaaacagcaatgcagcagctgcagcaacacctccagcaattgctccagttttggagtcacctgatggaatagaattaattccacccgaatatgtcaaatcccccgtctgcatcatttatgcatatgcatatcccaagcagtatcacaaatgtaacagaattaaaactatagagaatcaccttgtgatacagtaggtgttgggggattgaaaggaggtggtggagaaaaaggtggagctccagggcagggttttgtagtacccgggccacaaagatctttattattagcaaaactgcgacaatgaaataaccatttgtcagcctcacaagatgtagtaagcactaagaacctaaattctatctagaaaaagcaccttataggggtaaagagtgaaaaggagccagtagacggaacctctcctgagagattgttatttgagagatccctgcataaattattggacactttgttaatatgtatccatcttaaagtctattaccatgtaagcaataaattctacaggtagacaccaaatatgaattagcagaaagggaacttacagaacttgaagagtggtgatattggtcaaggattttggaattgaaccagaaagactgttgttgttaagacgactatccttacaagaagacatgcaaataaagaattatgttatgatcattcaaacaggaaggccttcaatgatatacacaatttataattctattcataatAaaaaaaaagtggagtacacttacaggaaacgcagcttgtagagttgccccaaggtttccggaataaaaccagtgaagttgttcaggtaaagatccaaactgaccaagttagttaagtttcccagttcattaggtattgtcccacttatgttgttgctgtaaagctccctgtaattagtcacaacataattaaatttcacaataaaaatgcaagaaagaaggtggcaacacaaccatcttcgccacaaggataagccatattccaagagttttgaaaaccaagcttctatgcagtggattatttcaaaaaccaagcttgtatgcagtatattgtgacaacttgaatagatacgctactgcatggtgtaactaaaagcataattctccaaagactgaaagtgtaaacttacagatattgcagatttttcaactgcccaagctggggaaccaatgcccctgacagttgtgcatttccaagatcactgcgaaaggaaaatagatcagtcaacacacaaaatgatcacatttcttacttttgacaagcctaaaaatgataattctgtcaaaaacttacactctgatcacgctgttgtcagggttacaagttacatggaaccatgtgcatggattgaccagagtgggatcccaactctgcagcacattgttagcatctttcagactttggcgcagactatatagggcatcacctgacatcgaacataccctcaacatcagcaacatagtatttaaggaagtagacaatagtgacagtagcttctcgtcaaaattttggcaaattcaatcgcctttttaggctaaagtatgcaagcatatattgagtacaagaaggtataagatacagtactttcatttcttacaatactatctgcataactcccaatctttctcaagattagtgtttgaacattagttagtttctacgctatagagtcaagacctaaatgtggaaaaggatagaacataaagttgcttaaaaagactgaaataattgcataaaaaacaactacaaagaacacttatcttagtcgtaatcactaattaaaacttgcaatagctaaggcaccttttgcaatctagtgtcataaacatcacaacgccaaaatcactaTtttttcttagaacgtggttactaccaaggatatatcaggaaatgcatgttgaggagcacgccaagcaattcggacattttaaagaggtgaaatttgttcggtgataacaaaggatgatgactttatttcccgtttgcgaaaagcttaaacttgatactaacgatggcccttgcctattgaagagcgatctctaacacatactcctaccataagaaaccaattagctatactagtcagtaattcagatttttttAaaaaaaaaatctcttttcacaagagaagattcaccactcacaagcaatattcttccatactcgaacctaatgaggaagccagttccattttcttcattcagagtggccaaaatagcacaccaaactcatcccagatattagcaatcccatttctctcaggatttattccattatctaaaaaaaaagctatcccatttctgtgcacatacaaatcacacctaccaaacttactcaagaaacgtttcctacctcggacaaatctccctgctgggagcaaattcacaacacaccatgagaggcagcaaaacaaagagctatagcctagataatccatcgagtctacaaaaggaaggtcggtgggcgtatgctccatccccttaaatgagtcaatccatccacgcccatatgtaccgagaagcaggtaacatgtactagtacccaaacggaatcacccgatgaccaatagattcatcgaatccgaaagcaagtccaaaaataggggtgggcgtaatccgccgaaaaacggagctgaattcgatgaaaaatcacactaaccctccgtgttggcgccgacccggctcacggccaccgccaccacccacacgaccgccaccgccaagcacagccgccgccgccgcagcagccgcgcctccgccatcccccgccgccgctcaccgctgccaagtggacccaacccggaggccgccggcgtcccctcggcaaagggggggaccgcccgatcagctccctctcctcgccgccgccgccgccggctcggtctcctctcctctcctctcctcttctccaatggaagcaggaagcgacctgtctctcctctctctctctctcctttttttttttaccagtgtttttattcag

More
CDS seq

atggcggaggcgcggctgctgcggcggcggcggctgtgcttggcggtggcggtcgtgtgggtggtggcggtggccgtgagccgggtcggcgccaacacggagggtgatgccctatatagtctgcgccaaagtctgaaagatgctaacaatgtgctgcagagttgggatcccactctggtcaatccatgcacatggttccatgtaacttgtaaccctgacaacagcgtgatcagagttgatcttggaaatgcacaactgtcaggggcattggttccccagcttgggcagttgaaaaatctgcaatatctggagctttacagcaacaacataagtgggacaatacctaatgaactgggaaacttaactaacttggtcagtttggatctttacctgaacaacttcactggttttattccggaaaccttggggcaactctacaagctgcgtttccttcgtcttaacaacaacagtctttctggttcaattccaaaatccttgaccaatatcaccactcttcaagttctggatctctcaaataacaatctctcaggagaggttccgtctactggctccttttcactctttacccctataagttttgctaataataaagatctttgtggcccgggtactacaaaaccctgccctggagctccacctttttctccaccacctcctttcaatcccccaacacctactgtatcacaaggtgactccaaaactggagcaattgctggaggtgttgctgcagctgctgcattgctgtttgcggttccggcaattggatttgcatggtggcggcggcgtaaacctgaagaacacttctttgatgtccctgctgaggaggatccggaagtgcaccttggccaacttaagagattctcactccgggagcttcaagttgctactgataactttagcaataagaatattctgggaagaggtggctttggaaaggtgtacaagggtagattggcagatggctcgttggtagcagtgaaaagattaaaagaagaacgtacccctggtggtgagctccagttccaaacagaagttgaaatgattagcatggcggtgcataggaacctgcttcggcttcgtggattttgcatgacgcctacagaacggttacttgtctatccctacatggctaacgggagtgtcgcatcacgattgcgagagcggcagccaaatgatccaccacttgaatggcaaacaagaactcggattgcgctgggatctgccagaggattgtcctacttgcacgaccattgtgatcccaagatcattcatcgtgatgtcaaagctgcaaatattctgttggatgaagactttgaggcagtcgtgggtgactttggactggccaaacttatggattacaaggacactcatgtaaccacagctgttcgtgggacgatcggacacattgctcctgagtacctctctactgggaagtcctctgagaagactgatgtttttggctatggaatcatgcttcttgagctcattacaggacaaagggcatttgatcttgctcgtcttgcaaacgatgacgatgtgatgttgcttgattgggtgaaagggctcctgaaagagaagaaggtggagatgctggtggacccggacctccagagcggcttcgtggagcatgaggtggagtcactcatccaggtggctctgctctgcacgcagggctccccgatggaccggcccaagatgtcggaggtggtgaggatgctggagggcgacggcctcgcggagcggtgggaggagtggcagaaggtggaggtggtccggcaggaggcggagctggccccccgccacaacgactggatcgtcgactcgacctacaatcttcgggcaatggagctgtccggcccgaggtaa

More
Protein seq

MAEARLLRRRRLCLAVAVVWVVAVAVSRVGANTEGDALYSLRQSLKDANNVLQSWDPTLVNPCTWFHVTCNPDNSVIRVDLGNAQLSGALVPQLGQLKNLQYLELYSNNISGTIPNELGNLTNLVSLDLYLNNFTGFIPETLGQLYKLRFLRLNNNSLSGSIPKSLTNITTLQVLDLSNNNLSGEVPSTGSFSLFTPISFANNKDLCGPGTTKPCPGAPPFSPPPPFNPPTPTVSQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRKPEEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKVEMLVDPDLQSGFVEHEVESLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRQEAELAPRHNDWIVDSTYNLRAMELSGPR

Function LRR receptor kinase SERK2 [UniProtKB/Swiss-Prot:Q7XV05]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0015890 OsLiXu_04g0015890.01 Chr04 24717220 24722550 - NAM
CDS seq

atggcggaggcgcggctgctgcggcggcggcggctgtgcttggcggtggcggtcgtgtgggtggtggcggtggccgtgagccgggtcggcgccaacacggagggtgatgccctatatagtctgcgccaaagtctgaaagatgctaacaatgtgctgcagagttgggatcccactctggtcaatccatgcacatggttccatgtaacttgtaaccctgacaacagcgtgatcagagttgatcttggaaatgcacaactgtcaggggcattggttccccagcttgggcagttgaaaaatctgcaatatctggagctttacagcaacaacataagtgggacaatacctaatgaactgggaaacttaactaacttggtcagtttggatctttacctgaacaacttcactggttttattccggaaaccttggggcaactctacaagctgcgtttccttcgtcttaacaacaacagtctttctggttcaattccaaaatccttgaccaatatcaccactcttcaagttctggatctctcaaataacaatctctcaggagaggttccgtctactggctccttttcactctttacccctataagttttgctaataataaagatctttgtggcccgggtactacaaaaccctgccctggagctccacctttttctccaccacctcctttcaatcccccaacacctactgtatcacaaggtgactccaaaactggagcaattgctggaggtgttgctgcagctgctgcattgctgtttgcggttccggcaattggatttgcatggtggcggcggcgtaaacctgaagaacacttctttgatgtccctgctgaggaggatccggaagtgcaccttggccaacttaagagattctcactccgggagcttcaagttgctactgataactttagcaataagaatattctgggaagaggtggctttggaaaggtgtacaagggtagattggcagatggctcgttggtagcagtgaaaagattaaaagaagaacgtacccctggtggtgagctccagttccaaacagaagttgaaatgattagcatggcggtgcataggaacctgcttcggcttcgtggattttgcatgacgcctacagaacggttacttgtctatccctacatggctaacgggagtgtcgcatcacgattgcgagagcggcagccaaatgatccaccacttgaatggcaaacaagaactcggattgcgctgggatctgccagaggattgtcctacttgcacgaccattgtgatcccaagatcattcatcgtgatgtcaaagctgcaaatattctgttggatgaagactttgaggcagtcgtgggtgactttggactggccaaacttatggattacaaggacactcatgtaaccacagctgttcgtgggacgatcggacacattgctcctgagtacctctctactgggaagtcctctgagaagactgatgtttttggctatggaatcatgcttcttgagctcattacaggacaaagggcatttgatcttgctcgtcttgcaaacgatgacgatgtgatgttgcttgattgggtgaaagggctcctgaaagagaagaaggtggagatgctggtggacccggacctccagagcggcttcgtggagcatgaggtggagtcactcatccaggtggctctgctctgcacgcagggctccccgatggaccggcccaagatgtcggaggtggtgaggatgctggagggcgacggcctcgcggagcggtgggaggagtggcagaaggtggaggtggtccggcaggaggcggagctggccccccgccacaacgactggatcgtcgactcgacctacaatcttcgggcaatggagctgtccggcccgaggtaa

More
Protein seq

MAEARLLRRRRLCLAVAVVWVVAVAVSRVGANTEGDALYSLRQSLKDANNVLQSWDPTLVNPCTWFHVTCNPDNSVIRVDLGNAQLSGALVPQLGQLKNLQYLELYSNNISGTIPNELGNLTNLVSLDLYLNNFTGFIPETLGQLYKLRFLRLNNNSLSGSIPKSLTNITTLQVLDLSNNNLSGEVPSTGSFSLFTPISFANNKDLCGPGTTKPCPGAPPFSPPPPFNPPTPTVSQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRKPEEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKVEMLVDPDLQSGFVEHEVESLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRQEAELAPRHNDWIVDSTYNLRAMELSGPR

More
Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0015890 OsLiXu_04g0015890.02 Chr04 24718096 24722550 - NAM
CDS seq

atggcggaggcgcggctgctgcggcggcggcggctgtgcttggcggtggcggtcgtgtgggtggtggcggtggccgtgagccgggtcggcgccaacacggagggtgatgccctatatagtctgcgccaaagtctgaaagatgctaacaatgtgctgcagagttgggatcccactctggtcaatccatgcacatggttccatgtaacttgtaaccctgacaacagcgtgatcagagttgatcttggaaatgcacaactgtcaggggcattggttccccagcttgggcagttgaaaaatctgcaatatctggagctttacagcaacaacataagtgggacaatacctaatgaactgggaaacttaactaacttggtcagtttggatctttacctgaacaacttcactggttttattccggaaaccttggggcaactctacaagctgcgtttccttcgtcttaacaacaacagtctttctggttcaattccaaaatccttgaccaatatcaccactcttcaagttctggatctctcaaataacaatctctcaggagaggttccgtctactggctccttttcactctttacccctataagttttgctaataataaagatctttgtggcccgggtactacaaaaccctgccctggagctccacctttttctccaccacctcctttcaatcccccaacacctactgtatcacaaggtgactccaaaactggagcaattgctggaggtgttgctgcagctgctgcattgctgtttgcggttccggcaattggatttgcatggtggcggcggcgtaaacctgaagaacacttctttgatgtccctgctgaggaggatccggaagtgcaccttggccaacttaagagattctcactccgggagcttcaagttgctactgataactttagcaataagaatattctgggaagaggtggctttggaaaggtgtacaagggtagattggcagatggctcgttggtagcagtgaaaagattaaaagaagaacgtacccctggtggtgagctccagttccaaacagaagttgaaatgattagcatggcggtgcataggaacctgcttcggcttcgtggattttgcatgacgcctacagaacggttacttgtctatccctacatggctaacgggagtgtcgcatcacgattgcgagagcggcagccaaatgatccaccacttgaatggcaaacaagaactcggattgcgctgggatctgccagaggattgtcctacttgcacgaccattgtgatcccaagatcattcatcgtgatgtcaaagctgcaaatattctgttggatgaagactttgaggcagtcgtgggtgactttggactggccaaacttatggattacaaggacactcatgtaaccacagctgttcgtgggacgatcggacacattgctcctgagtacctctctactgggaagtcctctgagaagactgatgtttttggctatggaatcatgcttcttgagctcattacaggacaaagggcatttgatcttgctcgtcttgcaaacgatgacgatgtgatgttgcttgattgggtaagtaccaccacatctttatatattggggcaaccatggaagttttggttttgtttttccttgtgcatgatagttgtcctccaggacacatctttcttagctgtgtctcggttctagtccaagaattagaataa

More
Protein seq

MAEARLLRRRRLCLAVAVVWVVAVAVSRVGANTEGDALYSLRQSLKDANNVLQSWDPTLVNPCTWFHVTCNPDNSVIRVDLGNAQLSGALVPQLGQLKNLQYLELYSNNISGTIPNELGNLTNLVSLDLYLNNFTGFIPETLGQLYKLRFLRLNNNSLSGSIPKSLTNITTLQVLDLSNNNLSGEVPSTGSFSLFTPISFANNKDLCGPGTTKPCPGAPPFSPPPPFNPPTPTVSQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRKPEEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVSTTTSLYIGATMEVLVLFFLVHDSCPPGHIFLSCVSVLVQELE

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.614269 3.574955 2.632005

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0457800 RBH 9.310103 12.806160 10.170617
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g38480 RBH 5.131497 7.405272 2.273780
Nipponbare | IRGSP 1.0 | RAP-db Os04g0457800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0015720 RBH 0.414794 17.685368 9.510224
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0016460 RBH 0.567575 6.861198 2.105632
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0016190 RBH 3.646673 21.686275 7.888460
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0015920 RBH 0.525840 0.853207 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0016160 RBH 11.741917 22.834911 26.941164
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0356600 RBH 5.4914475 27.2443905 8.332405
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0014960 RBH 0.552619 2.386018 1.946765
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0355300 RBH 7.4336265 27.6290615 12.096069
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0015480 RBH 0.926235 0.429352 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0015390 RBH 1.156154 22.539864 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0015350 RBH 2.299966 36.353168 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0020740 RBH 0.000000 0.052192 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0015980 RBH 0.663214 22.082521 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G015200 RBH 1.314978 9.649262 6.230430
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0015260 RBH 3.963027 39.110256 13.401776
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.