Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_11g0018930 OGI:11066220 | 5/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr11:24709803-24713005
Gene Symbol RYMV3, OsRYMV3, -
DNA seq

tcaggttgcaccaactcttcccatcttaagggtgggatggttgggatggacttgggctacatgcctcaatgcagcctctgcttcctccacttcaccattcgtgacttcataacaacgaattacaacgtcgatatgctcaagggacagcaggttccccaatccgaagtcaaaatcagcattaccaccatcttttgcttgctgcacactgaaactaaacctaatgttctcaacccttggcatggctcctagttgaaacattagatcacaagaaaatatccaaattttgaaaactttcaaacagtggaaaccatcagcaccaatgagcaacttatcctgatctgtaagatctagctcaagagatagaagagctggtaacctcccaaggatttgtagatcctcctgtgacagttccatgaactggatagttaagacagagaggttcgagagaagtgagggatctctctttatccatgtcggcatagcaaggaaaggcccatgtgcaaaaaatctacgcaaatatggtgggggaacccaactgttcccaattaaattcaaaagaggtggcaaagcttgcacatctagggtttcaattttttgcagcttgcacaaagactccaccagagtttccatcaaggccatgtccatttcaaatgccaacatggagagctcccgtagtcttgtcaaactctgcaactgtttcacaaagtttggggattcgtcgaggaaaactgtggacaacacttccagggatgccaggttccccatctcaccagggagccttgtgttctcgccaacacgtaggcacatcaattgtctgagctgaacaaatgcccatggcaattcttctacagcaagtccaatgatgtcgattgtctgtaagaactgtagatttcctatttctactgggagctcgccactctttagtggataattttttgaacgtaaccttagataccttagatgatataaattaccaacatacctaaggttgtgaagttcacaaccctctatatccagtacacgcagaacatggaagcttgaaagaggcggcatcagattaatagccggcatgaatacaataaccgacctcacttgtgacatgctcatggtaacctgaggcatggtgggctctaccacactgttttggagggccaacctgcgaaccttgatttgcgaagatgtttttcttttaataccatcaaatatagtaacaaaattttttgcagtcgacacgtggagtatgagatcaagcaccatatcatgtacacgacaagctctagccttaccttccacattgatgtctattggttggatcatgcttctatttatgagttcattgaagtaactgtctccaaagtcaaaaaggctagtttcatgtttttcacatttcacgaaaccttcagctatccatatccatatcaattggtctcttggaatctcgtaatcttctgggaatatgcttagatataataaacatgtctttaaatgagaaggtaaatcataataacttaaggacaataccttttgcatttcctccatactgtcaccttccgcaagaccatggccaatagaattgagcaaagcatcccatttatcatttgttttgctccgcataggactggacagaagactagcaatagtaatgatggctaatggtaccccaccacatttcttcaagatatctcgagatacttgtacaagctcatggggacacccatcctcatgtgaaaatattcttttataaaagagtctttgggagtcaacatcagaaagatgtttcattctgtaaattatatcatcacaggaagagcaacatgcttcagagacactgactttgcgagttgtcgtgattaatcgactacctagattgtttacggtgaatgcacacttgataaatccgcacaacttttcatcccatatgtcatcaattacaatcaggtacctatatcagtttgcgagtattagctagcagaacaatcaaaataaatattccctccgtgttttaatgtatgacgccgttgaccttttaacaaacgtttaacctttcgtcttattcaaaaaaattatgtaattatcatttattttattgtgacttgatctatcatcaaatgttctttaagcatgacataagtatttttgtatttgcataaaaaatttgaataagacgaatggtcaaatgttggttaaaaagtcaacggcgtcatacattaaaacggagggagtatctatttagctagccaagcaaaaaataatgcaccctaaaggatcacttaacaagaagaagaagaagaagaagaagggataagctagtatatatgttgttggctagcatgtctcaggaattaaaaaaatgagctagcgtataatgaagcataccttttatcctcaaggaaccttctcagttcatcaatgagctgcacttgatccctttctgcttcattgatatttgcataccttcctctctcaagttcgtagagtatcttcttgaaaatctttgtcacatcaggacttcgagacactgaaacgaaagccgtgcaatcaaattgcacctttatcttgtcatacactactttggcaagagttgtcttgcccagcccaccaaatccaacaattgaaatcgtcctcaatcggtgcttggacccttcttcccgatggaataacctctcgatgagctcgtcccttggttgctcgatgccaatcagctctgtctcatccttgtatagagccatcacacgagggtcaatggcagcgccagcgctgacgtcgtgcacatcaagctcgtacctttgacgcagctctgctagctgcttggcgagctcctgggcttcttctatggccctggcgatctgatggagatccttgcccttcctgtacaagccggtggtcttcttgagaaacttcttgactctgttcttctttaagctggagggctcacacccatccacacgcaccatgaaggagtcgatggcgtcctccatgtcgtaggacagctccctcaccttgcctgcccagatcctgacctgctcgtcgagctggtcaagtggcacactggctaccttgtcgagggccttgtgcatcatctccagctcagtctcgagggacataaggcctttcttcaccttcttccctagcccatactcattcctgatcagctcgccgagtttggccaggagaggacgcatggcccccgctgcggcctccat

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CDS seq

atggaggccgcagcgggggccatgcgtcctctcctggccaaactcggcgagctgatcaggaatgagtatgggctagggaagaaggtgaagaaaggccttatgtccctcgagactgagctggagatgatgcacaaggccctcgacaaggtagccagtgtgccacttgaccagctcgacgagcaggtcaggatctgggcaggcaaggtgagggagctgtcctacgacatggaggacgccatcgactccttcatggtgcgtgtggatgggtgtgagccctccagcttaaagaagaacagagtcaagaagtttctcaagaagaccaccggcttgtacaggaagggcaaggatctccatcagatcgccagggccatagaagaagcccaggagctcgccaagcagctagcagagctgcgtcaaaggtacgagcttgatgtgcacgacgtcagcgctggcgctgccattgaccctcgtgtgatggctctatacaaggatgagacagagctgattggcatcgagcaaccaagggacgagctcatcgagaggttattccatcgggaagaagggtccaagcaccgattgaggacgatttcaattgttggatttggtgggctgggcaagacaactcttgccaaagtagtgtatgacaagataaaggtgcaatttgattgcacggctttcgtttcagtgtctcgaagtcctgatgtgacaaagattttcaagaagatactctacgaacttgagagaggaaggtatgcaaatatcaatgaagcagaaagggatcaagtgcagctcattgatgaactgagaaggttccttgaggataaaagaatgaaacatctttctgatgttgactcccaaagactcttttataaaagaatattttcacatgaggatgggtgtccccatgagcttgtacaagtatctcgagatatcttgaagaaatgtggtggggtaccattagccatcattactattgctagtcttctgtccagtcctatgcggagcaaaacaaatgataaatgggatgctttgctcaattctattggccatggtcttgcggaaggtgacagtatggaggaaatgcaaaagacatgtttattatatctaagcatattcccagaagattacgagattccaagagaccaattgatatggatatggatagctgaaggtttcgtgaaatgtgaaaaacatgaaactagcctttttgactttggagacagttacttcaatgaactcataaatagaagcatgatccaaccaatagacatcaatgtggaaggtaaggctagagcttgtcgtgtacatgatatggtgcttgatctcatactccacgtgtcgactgcaaaaaattttgttactatatttgatggtattaaaagaaaaacatcttcgcaaatcaaggttcgcaggttggccctccaaaacagtgtggtagagcccaccatgcctcaggttaccatgagcatgtcacaagtgaggtcggttattgtattcatgccggctattaatctgatgccgcctctttcaagcttccatgttctgcgtgtactggatatagagggttgtgaacttcacaaccttaggtatgttggtaatttatatcatctaaggtatctaaggttacgttcaaaaaattatccactaaagagtggcgagctcccagtagaaataggaaatctacagttcttacagacaatcgacatcattggacttgctgtagaagaattgccatgggcatttgttcagctcagacaattgatgtgcctacgtgttggcgagaacacaaggctccctggtgagatggggaacctggcatccctggaagtgttgtccacagttttcctcgacgaatccccaaactttgtgaaacagttgcagagtttgacaagactacgggagctctccatgttggcatttgaaatggacatggccttgatggaaactctggtggagtctttgtgcaagctgcaaaaaattgaaaccctagatgtgcaagctttgccacctcttttgaatttaattgggaacagttgggttcccccaccatatttgcgtagattttttgcacatgggcctttccttgctatgccgacatggataaagagagatccctcacttctctcgaacctctctgtcttaactatccagttcatggaactgtcacaggaggatctacaaatccttgggaggttaccagctcttctatctcttgagctagatcttacagatcaggataagttgctcattggtgctgatggtttccactgtttgaaagttttcaaaatttggatattttcttgtgatctaatgtttcaactaggagccatgccaagggttgagaacattaggtttagtttcagtgtgcagcaagcaaaagatggtggtaatgctgattttgacttcggattggggaacctgctgtcccttgagcatatcgacgttgtaattcgttgttatgaagtcacgaatggtgaagtggaggaagcagaggctgcattgaggcatgtagcccaagtccatcccaaccatcccacccttaagatgggaagagttggtgcaacctga

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Protein seq

MEAAAGAMRPLLAKLGELIRNEYGLGKKVKKGLMSLETELEMMHKALDKVASVPLDQLDEQVRIWAGKVRELSYDMEDAIDSFMVRVDGCEPSSLKKNRVKKFLKKTTGLYRKGKDLHQIARAIEEAQELAKQLAELRQRYELDVHDVSAGAAIDPRVMALYKDETELIGIEQPRDELIERLFHREEGSKHRLRTISIVGFGGLGKTTLAKVVYDKIKVQFDCTAFVSVSRSPDVTKIFKKILYELERGRYANINEAERDQVQLIDELRRFLEDKRMKHLSDVDSQRLFYKRIFSHEDGCPHELVQVSRDILKKCGGVPLAIITIASLLSSPMRSKTNDKWDALLNSIGHGLAEGDSMEEMQKTCLLYLSIFPEDYEIPRDQLIWIWIAEGFVKCEKHETSLFDFGDSYFNELINRSMIQPIDINVEGKARACRVHDMVLDLILHVSTAKNFVTIFDGIKRKTSSQIKVRRLALQNSVVEPTMPQVTMSMSQVRSVIVFMPAINLMPPLSSFHVLRVLDIEGCELHNLRYVGNLYHLRYLRLRSKNYPLKSGELPVEIGNLQFLQTIDIIGLAVEELPWAFVQLRQLMCLRVGENTRLPGEMGNLASLEVLSTVFLDESPNFVKQLQSLTRLRELSMLAFEMDMALMETLVESLCKLQKIETLDVQALPPLLNLIGNSWVPPPYLRRFFAHGPFLAMPTWIKRDPSLLSNLSVLTIQFMELSQEDLQILGRLPALLSLELDLTDQDKLLIGADGFHCLKVFKIWIFSCDLMFQLGAMPRVENIRFSFSVQQAKDGGNADFDFGLGNLLSLEHIDVVIRCYEVTNGEVEEAEAALRHVAQVHPNHPTLKMGRVGAT

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0018930 OsLaMu_11g0018930.01 Chr11 24709803 24713005 - NAM
CDS seq

atggaggccgcagcgggggccatgcgtcctctcctggccaaactcggcgagctgatcaggaatgagtatgggctagggaagaaggtgaagaaaggccttatgtccctcgagactgagctggagatgatgcacaaggccctcgacaaggtagccagtgtgccacttgaccagctcgacgagcaggtcaggatctgggcaggcaaggtgagggagctgtcctacgacatggaggacgccatcgactccttcatggtgcgtgtggatgggtgtgagccctccagcttaaagaagaacagagtcaagaagtttctcaagaagaccaccggcttgtacaggaagggcaaggatctccatcagatcgccagggccatagaagaagcccaggagctcgccaagcagctagcagagctgcgtcaaaggtacgagcttgatgtgcacgacgtcagcgctggcgctgccattgaccctcgtgtgatggctctatacaaggatgagacagagctgattggcatcgagcaaccaagggacgagctcatcgagaggttattccatcgggaagaagggtccaagcaccgattgaggacgatttcaattgttggatttggtgggctgggcaagacaactcttgccaaagtagtgtatgacaagataaaggtgcaatttgattgcacggctttcgtttcagtgtctcgaagtcctgatgtgacaaagattttcaagaagatactctacgaacttgagagaggaaggtatgcaaatatcaatgaagcagaaagggatcaagtgcagctcattgatgaactgagaaggttccttgaggataaaagaatgaaacatctttctgatgttgactcccaaagactcttttataaaagaatattttcacatgaggatgggtgtccccatgagcttgtacaagtatctcgagatatcttgaagaaatgtggtggggtaccattagccatcattactattgctagtcttctgtccagtcctatgcggagcaaaacaaatgataaatgggatgctttgctcaattctattggccatggtcttgcggaaggtgacagtatggaggaaatgcaaaagacatgtttattatatctaagcatattcccagaagattacgagattccaagagaccaattgatatggatatggatagctgaaggtttcgtgaaatgtgaaaaacatgaaactagcctttttgactttggagacagttacttcaatgaactcataaatagaagcatgatccaaccaatagacatcaatgtggaaggtaaggctagagcttgtcgtgtacatgatatggtgcttgatctcatactccacgtgtcgactgcaaaaaattttgttactatatttgatggtattaaaagaaaaacatcttcgcaaatcaaggttcgcaggttggccctccaaaacagtgtggtagagcccaccatgcctcaggttaccatgagcatgtcacaagtgaggtcggttattgtattcatgccggctattaatctgatgccgcctctttcaagcttccatgttctgcgtgtactggatatagagggttgtgaacttcacaaccttaggtatgttggtaatttatatcatctaaggtatctaaggttacgttcaaaaaattatccactaaagagtggcgagctcccagtagaaataggaaatctacagttcttacagacaatcgacatcattggacttgctgtagaagaattgccatgggcatttgttcagctcagacaattgatgtgcctacgtgttggcgagaacacaaggctccctggtgagatggggaacctggcatccctggaagtgttgtccacagttttcctcgacgaatccccaaactttgtgaaacagttgcagagtttgacaagactacgggagctctccatgttggcatttgaaatggacatggccttgatggaaactctggtggagtctttgtgcaagctgcaaaaaattgaaaccctagatgtgcaagctttgccacctcttttgaatttaattgggaacagttgggttcccccaccatatttgcgtagattttttgcacatgggcctttccttgctatgccgacatggataaagagagatccctcacttctctcgaacctctctgtcttaactatccagttcatggaactgtcacaggaggatctacaaatccttgggaggttaccagctcttctatctcttgagctagatcttacagatcaggataagttgctcattggtgctgatggtttccactgtttgaaagttttcaaaatttggatattttcttgtgatctaatgtttcaactaggagccatgccaagggttgagaacattaggtttagtttcagtgtgcagcaagcaaaagatggtggtaatgctgattttgacttcggattggggaacctgctgtcccttgagcatatcgacgttgtaattcgttgttatgaagtcacgaatggtgaagtggaggaagcagaggctgcattgaggcatgtagcccaagtccatcccaaccatcccacccttaagatgggaagagttggtgcaacctga

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Protein seq

MEAAAGAMRPLLAKLGELIRNEYGLGKKVKKGLMSLETELEMMHKALDKVASVPLDQLDEQVRIWAGKVRELSYDMEDAIDSFMVRVDGCEPSSLKKNRVKKFLKKTTGLYRKGKDLHQIARAIEEAQELAKQLAELRQRYELDVHDVSAGAAIDPRVMALYKDETELIGIEQPRDELIERLFHREEGSKHRLRTISIVGFGGLGKTTLAKVVYDKIKVQFDCTAFVSVSRSPDVTKIFKKILYELERGRYANINEAERDQVQLIDELRRFLEDKRMKHLSDVDSQRLFYKRIFSHEDGCPHELVQVSRDILKKCGGVPLAIITIASLLSSPMRSKTNDKWDALLNSIGHGLAEGDSMEEMQKTCLLYLSIFPEDYEIPRDQLIWIWIAEGFVKCEKHETSLFDFGDSYFNELINRSMIQPIDINVEGKARACRVHDMVLDLILHVSTAKNFVTIFDGIKRKTSSQIKVRRLALQNSVVEPTMPQVTMSMSQVRSVIVFMPAINLMPPLSSFHVLRVLDIEGCELHNLRYVGNLYHLRYLRLRSKNYPLKSGELPVEIGNLQFLQTIDIIGLAVEELPWAFVQLRQLMCLRVGENTRLPGEMGNLASLEVLSTVFLDESPNFVKQLQSLTRLRELSMLAFEMDMALMETLVESLCKLQKIETLDVQALPPLLNLIGNSWVPPPYLRRFFAHGPFLAMPTWIKRDPSLLSNLSVLTIQFMELSQEDLQILGRLPALLSLELDLTDQDKLLIGADGFHCLKVFKIWIFSCDLMFQLGAMPRVENIRFSFSVQQAKDGGNADFDFGLGNLLSLEHIDVVIRCYEVTNGEVEEAEAALRHVAQVHPNHPTLKMGRVGAT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.539979 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0588600 SBH 7.568878 7.147371 7.533903
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g43700 SBH 0.338432 0.094341 0.064541
Nipponbare | IRGSP 1.0 | RAP-db Os11g0588600 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0018790 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0022650 SBH 0.107532 1.313498 0.726294
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0022380 SBH 0.469252 1.244121 1.933624
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0018420 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0019120 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0349100 RBH 0.1837835 0.667904 0.4400575
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0019270 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0362000 SBH 0 0 0.0127895
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0019020 SBH 0.831603 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0014710 SBH 0.604820 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0018710 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0018790 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0018910 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G017650 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0019390 RBH 0.0 0.0 0.0
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Huazhong Agricultural University

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