Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0022650 | OGI:11074750 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:27553839-27557915 | ||||||||
| Gene Symbol | RYMV3, OsRYMV3 | ||||||||||
| DNA seq | tctctgtcgtcagtaatgaagattaagcaccggagaaccatgtttgcaaaggattgttgatcaagacgtttgattaaaaaaaacattcttgatcaagaggagacactgcaaatgaatttgggaaatgttttattgctcactgctgaatgttcagaggttgtctggaactaggtatactcgattccgtactgatatttttgcggagttctgtcagacaaaataacccaatctaacattcgatcaacatgtggtccattgcaaaatacaacatgcatatgatgatctgagagtactatgtacacaccttttgcacagccccatcataacaaagaaaaaaaaagatgtaaaggtgagcactgagtagatagaaagatgaactcaacacaagtttgtctgaactgtacatctttcatgttctgcttgattttggatcccctctcattcaagttgtaaacgtgaatgattcaagaactttcactggccatgctgtctggtgccctgTtttcttccatgtcggagtcttccataggatcctctgactggaaatttgaaataaagtacttgttaacaCaaatagatatataaaaatcatggtaagacaggtatagtaggtagctggacaaggcaactagtaaataaaaatgaacctttgtaaggtatatgtatatatatgtacctgttgctcctcttcatcatccaagaccattttatcttcatccgatctgcgcatttcaagggttggatgcttgggatggatgtcggctacgtgcctcagcacattctcaacctcctccacctcccattctacagcatcctcacacaacagatcaatggtgacttcctcgatcgaagccaggttccccaagccaacatcaaaattgatatcctcagaatctaccacgttgattttgaactccagttttctaacctttggcattgctcctggttggaacaccagcccacaatattgaatgaatgtgcagtctgtcagagatgggaatgcaccagcgccaatcacaagccattcactttctctgttgatctgtatccaaagaacctgaagagccggcaacctcccaagtttctcgacatgctcctgacgcatgtcgcagatggacaagtccagaaaggaaaggtatgggagatctatcggggaattgaaccacacaggtagtacagtgaagaaatacatgggttttatcccaagtacatgaatgtgttggggaaggtccaagaactctggtagggaatccaaatggacgattctatgtactccctgcagaattagacggcggagtttgtgtagattgcacaatacctcaccgagaattctcccgatgctcgagacctcagacgaccacacctgaattgtaagatctcttagttctgtcaggttacccaatgcttttagcaagctgaaggagtcaccattaacatcaatagaggatgttcttcgaaaaacatctaccggggacaactccagcagtgatgtcaattcaccaatcctgtctgacagtgatatattttcatgaaaatataggaacatcaatcttcttagctgataaatagccggtggcagttcttttatactaagacttctatgcacgtctagagtctgcaaaaactgaagatttcctatctcatttgggagcttagtgatacatccacagtgtagtctcaggtaccttaggtgaaataagttcccaagatgcttaaggtggtagctctcctcaaaatgacaattatataaatccaacacacgtaaaattggaaacattgtaattgccggcgtcatatgaacatctgcgcgaagaagagagaggaaccttacttttggcacagtagcctctggtatagtgtgcactacattgcaatctcggagggatatccggtgagctttactgagtgaagatgcgcctcgctcctgatccaatatggtaacaaaattctcctcatttgagagggaaaggatgaggtcaagcaccatgtcatgcactcgacaagatattattgcgttgtcatacccatctttgtaatacataaagtcattttcatcccaaggttgaatcatgcttctatttatgagctcatagaaataattctctcctagctcaaccagcacatcgtccttttgatttgttgttttttggacaacaccttcggctatccacatccgtaccaaatggtctctactaattataaaatcttctggaaatatacttagatacagtaaacatgtcttgaggtgacacggtagatcataatagctaaaagacaatatctttgtcatgtcctcaaccttgggctctttggtaagtccgcgaccaatagaattaaacacatcatgccattgatcccTtgtttgtacctgcttgttggctaagagactagctatagttataatggctaacggcatcccagcacatttcttcaatatacctattgatacttgttccagttctggaggacacccattatcatgcttaaatatcattttgtagaatagccTtttggaggcatcatcagaaagaggcttcatcctataaattgcatcatcatgagagcaacatgctttagaaactgtaactttgcgtgtcgtggttattattcgactgcaaagcttgtttctgtagaaagcacacttgatatattcccacagtttttcatcccatatatcatcaattatgatgatgtacctgtatgttattttgtcaagcatatatagttagcaatatgaaggcatatataactaatttgttttcaatttttgtagtaagctgttagtaagttatctttgggaatgtgtataccAacactaataccactacaacttaatttgttgttgctggagaagaaggggacctcaccagtttcctcatgtgcatgaatctttgaggaaagttaagtgttgcgaatgcgagaaactgcagattgtttcaaattctttcccttaattcatttgcgctagtacctcaatcatggaaattaaaatggacactactgtatttgtgtggagtgatgactagctactattgtgtagcagagtacataccttttgttctgaacaaaatctcgaagttcattaataaggaggcgttcatccatccttgagttatgaatgctaatataccgctgcctatcaaggtcatatatcatgtccgtcaaaactttcttcaagtcaggattttgacccaccgaaacaaaagccgcgcagtcgaattggcctctgagcttgtcatacacaaccttagcaagagtcgtcttgcccaatcctccaaatccaacaacggacacgatattcagttggtcgtcgtctgcaggcctagacaacatgccgatcagctcatctctggcctcttcgatgccaacaagctctgtgatatccttgtaaagagcaaggatccggggatccacggtggccgtagccggagtcgttgcagcagctgctgcatcgaacttgtaccttgctcgcagctctgccacctcatctgcaagctccttgatgtcacagatcccttcggcgatctcacggcgagctttccctttcctgatcagatcactcgtcttgcgaaggatcctcttgaagaatccctggttgataggatcgacaaggttgctgccctctgcgacacgcacgacaaaggcgtcgatggcatcctcgatggcatatgatagctccctgacattagaggcccagagcttgacatcgagctctaccatctcccttggaaccttggcaactctctcgagggcgatgtgcatcgctgcgagctcccgggagagggactcgacgtcgttcttgacgcccttctgtagcttgtactcctccttgagaagctcagctagccttGggagcacgctgcctatggcacccatggcgagctccatgctggtgggagaaggagctttgcttgtggagtgaggaaagtgaatgcctggagctggaggaagaagaaggaagaaaattggtggtggatggaatcttggcaaagtgagagtgcctgcgagatgttgctgagaaacttcattttttctatcactttgtggaaagttgttagaaagagacatgcactgcat
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| CDS seq | atgcagtgcatgtctctttctaacaactttccacaaagtgatagaaaaaatgaagtttctcagcaacatctcgcaggcactctcactttgccaagattccatccaccaccaattttcttccttcttcttcctccagctccaggcattcactttcctcactccacaagcaaagctccttctcccaccagcatggagctcgccatgggtgccataggcagcgtgctccCaaggctagctgagcttctcaaggaggagtacaagctacagaagggcgtcaagaacgacgtcgagtccctctcccgggagctcgcagcgatgcacatcgccctcgagagagttgccaaggttccaagggagatggtagagctcgatgtcaagctctgggcctctaatgtcagggagctatcatatgccatcgaggatgccatcgacgcctttgtcgtgcgtgtcgcagagggcagcaaccttgtcgatcctatcaaccagggattcttcaagaggatccttcgcaagacgagtgatctgatcaggaaagggaaagctcgccgtgagatcgccgaagggatctgtgacatcaaggagcttgcagatgaggtggcagagctgcgagcaaggtacaagttcgatgcagcagctgctgcaacgactccggctacggccaccgtggatccccggatccttgctctttacaaggatatcacagagcttgttggcatcgaagaggccagagatgagctgatcggcatgttgtctaggcctgcagacgacgaccaactgaatatcgtgtccgttgttggatttggaggattgggcaagacgactcttgctaaggttgtgtatgacaagctcagaggccaattcgactgcgcggcttttgtttcggtgggtcaaaatcctgacttgaagaaagttttgacggacatgatatatgaccttgataggcagcggtatattagcattcataactcaaggatggatgaacgcctccttattaatgaacttcgagattttgttcagaacaaaaggtacatcatcataattgatgatatatgggatgaaaaactgtgggaatatatcaagtgtgctttctacagaaacaagctttgcagtcgaataataaccacgacacgcaaagttacagtttctaaagcatgttgctctcatgatgatgcaatttataggatgaagcctctttctgatgatgcctccaaaAggctattctacaaaatgatatttaagcatgataatgggtgtcctccagaactggaacaagtatcaataggtatattgaagaaatgtgctgggatgccgttagccattataactatagctagtctcttagccaacaagcaggtacaaacaAgggatcaatggcatgatgtgtttaattctattggtcgcggacttaccaaagagcccaaggttgaggacatgacaaagatattgtcttttagctattatgatctaccgtgtcacctcaagacatgtttactgtatctaagtatatttccagaagattttataattagtagagaccatttggtacggatgtggatagccgaaggtgttgtccaaaaaacaacaaatcaaaaggacgatgtgctggttgagctaggagagaattatttctatgagctcataaatagaagcatgattcaaccttgggatgaaaatgactttatgtattacaaagatgggtatgacaacgcaataatatcttgtcgagtgcatgacatggtgcttgacctcatcctttccctctcaaatgaggagaattttgttaccatattggatcaggagcgaggcgcatcttcactcagtaaagctcaccggatatccctccgagattgcaatgtagtgcacactataccagaggctactgtgccaaaagtaaggttcctctctcttcttcgcgcagatgttcatatgacgccggcaattacaatgtttccaattttacgtgtgttggatttatataattgtcattttgaggagagctaccaccttaagcatcttgggaacttatttcacctaaggtacctgagactacactgtggatgtatcactaagctcccaaatgagataggaaatcttcagtttttgcagactctagacgtgcatagaagtcttagtataaaagaactgccaccggctatttatcagctaagaagattgatgttcctatattttcatgaaaatatatcactgtcagacaggattggtgaattgacatcactgctggagttgtccccggtagatgtttttcgaagaacatcctctattgatgttaatggtgactccttcagcttgctaaaagcattgggtaacctgacagaactaagagatcttacaattcaggtgtggtcgtctgaggtctcgagcatcgggagaattctcggtgaggtattgtgcaatctacacaaactccgccgtctaattctgcagggagtacatagaatcgtccatttggattccctaccagagttcttggaccttccccaacacattcatgtacttgggataaaacccatgtatttcttcactgtactacctgtgtggttcaattccccgatagatctcccatacctttcctttctggacttgtccatctgcgacatgcgtcaggagcatgtcgagaaacttgggaggttgccggctcttcaggttctttggatacagatcaacagagaaagtgaatggcttgtgattggcgctggtgcattcccatctctgacagactgcacattcattcaatattgtgggctggtgttccaaccaggagcaatgccaaaggttagaaaactggagttcaaaatcaacgtggtagattctgaggatatcaattttgatgttggcttggggaacctggcttcgatcgaggaagtcaccattgatctgttgtgtgaggatgctgtagaatgggaggtggaggaggttgagaatgtgctgaggcacgtagccgacatccatcccaagcatccaacccttgaaatgcgcagatcggatgaagataaaatggtcttggatgatgaagaggagcaacagtcagaggatcctatggaagactccgacatggaagaaaAcagggcaccagacagcatggccagtgaaagttcttga
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| Protein seq | MQCMSLSNNFPQSDRKNEVSQQHLAGTLTLPRFHPPPIFFLLLPPAPGIHFPHSTSKAPSPTSMELAMGAIGSVLPRLAELLKEEYKLQKGVKNDVESLSRELAAMHIALERVAKVPREMVELDVKLWASNVRELSYAIEDAIDAFVVRVAEGSNLVDPINQGFFKRILRKTSDLIRKGKARREIAEGICDIKELADEVAELRARYKFDAAAAATTPATATVDPRILALYKDITELVGIEEARDELIGMLSRPADDDQLNIVSVVGFGGLGKTTLAKVVYDKLRGQFDCAAFVSVGQNPDLKKVLTDMIYDLDRQRYISIHNSRMDERLLINELRDFVQNKRYIIIIDDIWDEKLWEYIKCAFYRNKLCSRIITTTRKVTVSKACCSHDDAIYRMKPLSDDASKRLFYKMIFKHDNGCPPELEQVSIGILKKCAGMPLAIITIASLLANKQVQTRDQWHDVFNSIGRGLTKEPKVEDMTKILSFSYYDLPCHLKTCLLYLSIFPEDFIISRDHLVRMWIAEGVVQKTTNQKDDVLVELGENYFYELINRSMIQPWDENDFMYYKDGYDNAIISCRVHDMVLDLILSLSNEENFVTILDQERGASSLSKAHRISLRDCNVVHTIPEATVPKVRFLSLLRADVHMTPAITMFPILRVLDLYNCHFEESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQTLDVHRSLSIKELPPAIYQLRRLMFLYFHENISLSDRIGELTSLLELSPVDVFRRTSSIDVNGDSFSLLKALGNLTELRDLTIQVWSSEVSSIGRILGEVLCNLHKLRRLILQGVHRIVHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNSPIDLPYLSFLDLSICDMRQEHVEKLGRLPALQVLWIQINRESEWLVIGAGAFPSLTDCTFIQYCGLVFQPGAMPKVRKLEFKINVVDSEDINFDVGLGNLASIEEVTIDLLCEDAVEWEVEEVENVLRHVADIHPKHPTLEMRRSDEDKMVLDDEEEQQSEDPMEDSDMEENRAPDSMASESS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0022650 | OsKeNa_11g0022650.01 | Chr11 | 27553839 | 27557915 | - | NAM | ||
| CDS seq | atgcagtgcatgtctctttctaacaactttccacaaagtgatagaaaaaatgaagtttctcagcaacatctcgcaggcactctcactttgccaagattccatccaccaccaattttcttccttcttcttcctccagctccaggcattcactttcctcactccacaagcaaagctccttctcccaccagcatggagctcgccatgggtgccataggcagcgtgctccCaaggctagctgagcttctcaaggaggagtacaagctacagaagggcgtcaagaacgacgtcgagtccctctcccgggagctcgcagcgatgcacatcgccctcgagagagttgccaaggttccaagggagatggtagagctcgatgtcaagctctgggcctctaatgtcagggagctatcatatgccatcgaggatgccatcgacgcctttgtcgtgcgtgtcgcagagggcagcaaccttgtcgatcctatcaaccagggattcttcaagaggatccttcgcaagacgagtgatctgatcaggaaagggaaagctcgccgtgagatcgccgaagggatctgtgacatcaaggagcttgcagatgaggtggcagagctgcgagcaaggtacaagttcgatgcagcagctgctgcaacgactccggctacggccaccgtggatccccggatccttgctctttacaaggatatcacagagcttgttggcatcgaagaggccagagatgagctgatcggcatgttgtctaggcctgcagacgacgaccaactgaatatcgtgtccgttgttggatttggaggattgggcaagacgactcttgctaaggttgtgtatgacaagctcagaggccaattcgactgcgcggcttttgtttcggtgggtcaaaatcctgacttgaagaaagttttgacggacatgatatatgaccttgataggcagcggtatattagcattcataactcaaggatggatgaacgcctccttattaatgaacttcgagattttgttcagaacaaaaggtacatcatcataattgatgatatatgggatgaaaaactgtgggaatatatcaagtgtgctttctacagaaacaagctttgcagtcgaataataaccacgacacgcaaagttacagtttctaaagcatgttgctctcatgatgatgcaatttataggatgaagcctctttctgatgatgcctccaaaAggctattctacaaaatgatatttaagcatgataatgggtgtcctccagaactggaacaagtatcaataggtatattgaagaaatgtgctgggatgccgttagccattataactatagctagtctcttagccaacaagcaggtacaaacaAgggatcaatggcatgatgtgtttaattctattggtcgcggacttaccaaagagcccaaggttgaggacatgacaaagatattgtcttttagctattatgatctaccgtgtcacctcaagacatgtttactgtatctaagtatatttccagaagattttataattagtagagaccatttggtacggatgtggatagccgaaggtgttgtccaaaaaacaacaaatcaaaaggacgatgtgctggttgagctaggagagaattatttctatgagctcataaatagaagcatgattcaaccttgggatgaaaatgactttatgtattacaaagatgggtatgacaacgcaataatatcttgtcgagtgcatgacatggtgcttgacctcatcctttccctctcaaatgaggagaattttgttaccatattggatcaggagcgaggcgcatcttcactcagtaaagctcaccggatatccctccgagattgcaatgtagtgcacactataccagaggctactgtgccaaaagtaaggttcctctctcttcttcgcgcagatgttcatatgacgccggcaattacaatgtttccaattttacgtgtgttggatttatataattgtcattttgaggagagctaccaccttaagcatcttgggaacttatttcacctaaggtacctgagactacactgtggatgtatcactaagctcccaaatgagataggaaatcttcagtttttgcagactctagacgtgcatagaagtcttagtataaaagaactgccaccggctatttatcagctaagaagattgatgttcctatattttcatgaaaatatatcactgtcagacaggattggtgaattgacatcactgctggagttgtccccggtagatgtttttcgaagaacatcctctattgatgttaatggtgactccttcagcttgctaaaagcattgggtaacctgacagaactaagagatcttacaattcaggtgtggtcgtctgaggtctcgagcatcgggagaattctcggtgaggtattgtgcaatctacacaaactccgccgtctaattctgcagggagtacatagaatcgtccatttggattccctaccagagttcttggaccttccccaacacattcatgtacttgggataaaacccatgtatttcttcactgtactacctgtgtggttcaattccccgatagatctcccatacctttcctttctggacttgtccatctgcgacatgcgtcaggagcatgtcgagaaacttgggaggttgccggctcttcaggttctttggatacagatcaacagagaaagtgaatggcttgtgattggcgctggtgcattcccatctctgacagactgcacattcattcaatattgtgggctggtgttccaaccaggagcaatgccaaaggttagaaaactggagttcaaaatcaacgtggtagattctgaggatatcaattttgatgttggcttggggaacctggcttcgatcgaggaagtcaccattgatctgttgtgtgaggatgctgtagaatgggaggtggaggaggttgagaatgtgctgaggcacgtagccgacatccatcccaagcatccaacccttgaaatgcgcagatcggatgaagataaaatggtcttggatgatgaagaggagcaacagtcagaggatcctatggaagactccgacatggaagaaaAcagggcaccagacagcatggccagtgaaagttcttga
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| Protein seq | MQCMSLSNNFPQSDRKNEVSQQHLAGTLTLPRFHPPPIFFLLLPPAPGIHFPHSTSKAPSPTSMELAMGAIGSVLPRLAELLKEEYKLQKGVKNDVESLSRELAAMHIALERVAKVPREMVELDVKLWASNVRELSYAIEDAIDAFVVRVAEGSNLVDPINQGFFKRILRKTSDLIRKGKARREIAEGICDIKELADEVAELRARYKFDAAAAATTPATATVDPRILALYKDITELVGIEEARDELIGMLSRPADDDQLNIVSVVGFGGLGKTTLAKVVYDKLRGQFDCAAFVSVGQNPDLKKVLTDMIYDLDRQRYISIHNSRMDERLLINELRDFVQNKRYIIIIDDIWDEKLWEYIKCAFYRNKLCSRIITTTRKVTVSKACCSHDDAIYRMKPLSDDASKRLFYKMIFKHDNGCPPELEQVSIGILKKCAGMPLAIITIASLLANKQVQTRDQWHDVFNSIGRGLTKEPKVEDMTKILSFSYYDLPCHLKTCLLYLSIFPEDFIISRDHLVRMWIAEGVVQKTTNQKDDVLVELGENYFYELINRSMIQPWDENDFMYYKDGYDNAIISCRVHDMVLDLILSLSNEENFVTILDQERGASSLSKAHRISLRDCNVVHTIPEATVPKVRFLSLLRADVHMTPAITMFPILRVLDLYNCHFEESYHLKHLGNLFHLRYLRLHCGCITKLPNEIGNLQFLQTLDVHRSLSIKELPPAIYQLRRLMFLYFHENISLSDRIGELTSLLELSPVDVFRRTSSIDVNGDSFSLLKALGNLTELRDLTIQVWSSEVSSIGRILGEVLCNLHKLRRLILQGVHRIVHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNSPIDLPYLSFLDLSICDMRQEHVEKLGRLPALQVLWIQINRESEWLVIGAGAFPSLTDCTFIQYCGLVFQPGAMPKVRKLEFKINVVDSEDINFDVGLGNLASIEEVTIDLLCEDAVEWEVEEVENVLRHVADIHPKHPTLEMRRSDEDKMVLDDEEEQQSEDPMEDSDMEENRAPDSMASESS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.107532 | 1.313498 | 0.726294 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0657900 | RBH | 0.207521 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43700 | RBH | 0.338432 | 0.094341 | 0.064541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0657900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022600 | RBH | 0.142832 | 0.0 | 0.795712 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022380 | RBH | 0.469252 | 1.244121 | 1.933624 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021910 | RBH | 0.000000 | 0.117333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022270 | RBH | 0.000000 | 4.678591 | 2.442099 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0391900 | RBH | 1.0437075 | 4.5810225 | 2.736945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023220 | RBH | 0.185120 | 0.672409 | 0.521468 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0414300 | RBH | 1.5685855 | 6.445136 | 1.78354 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022740 | RBH | 0.100991 | 0.100365 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022590 | RBH | 0.0 | 1.604007 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022050 | RBH | 0.256640 | 0.0 | 0.289046 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022090 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022420 | RBH | 0.0 | 1.836865 | 0.336344 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022870 | RBH | 0.185782 | 1.103281 | 1.463827 |
