Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019020 | OGI:11065160 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24407655-24409903 | ||||||||
| Gene Symbol | XA39, Xa39, RYMV3, OsRYMV3 | ||||||||||
| DNA seq | actcactccaaatcctgagtagtccatggcgactccacccacctgagcagaaagatctcctccaccaccagcagcagcagcagtatcagccaagagcagcaagaagccaagaaaaagagcttggctctccaattcttttgcaaggtcagctgcattcgattcaagtgtactcccccctctactttgcggttgcagtttgtaggtgaacacttttctgtcctgagttgttaggcatctgcaaggacgtctgaaacatttggagagaacacaacaattaatctgggtagactgtgtttttattgtgtaaaactgggaaggaaacaaatactaccagatctgaacaaactatgtaggaactggtcatctgatagttgtgtctgtcagaagatttggggattaacggttactattgacttagctcaaagagcatataaatgtgtacaagataagagagaaatccataataccctcaatactcttatcagtgtctggtgagagttaaagttacagaggatgccacaatcatcttctctttctgcacttgaatgaacatctgaaacagctatatacaattgaagaaatttgtgctttgttgtgactctatgagatcttgacgcgattcattcggatcctgaattattgttgttagtccttaacaaatactattgttgttacttacagatattgagtgagtttggctagcaaggatatagacctgactacctaataactgtattctgtcctctatttaatagcttcagcagtttcaacgattattgagtttcgctttctttcAaaactctgcctttatgtgtaaacatgcttcgccagctcttttgccaaaatttcccatccttcaatccttgactgctaacttcttatatgctttttcattccagcagtgcttctcaaaatggtttcatgtgtgaaccgaggcagctgtctggtggtgaacagcaccatataatcatcacaataaacagagaggaggggggtggggcgtagtaaaccatcaggaatggagttcgccacaggggcaatgggcacgctcctccccaagctggtggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggaggggataacattcctcatagctgagctcaagagcatacaagcagcacttgagaaggtctcaaaggtgccgctagaccaacttgacgagcaaaccaagatctgggcttgggacattagggagttgtcttatgacattgaggacaacattgataccttcatgatacgtgtggatggtcttgagccagccaagaaacagaatttaacatggttaattgacaagtgccacaaatcgttgtccaagataaagatccgacacaaaatagccaatgaaatcaaagatatcaagagccaagtcagggaggtgatggaacgacgtgataggtacaagattgatgatgtcgctactattcctccaacatttgtggatcctcgcatcttgacattatatgagaatgtcaccaagcttgttggggttgataaggcaagtgatgatctaatgaagaggttgtctgtgggggatgaggcgcccaagaagctcaagatggtctctgttgttggaattggaggattgggcaagacaactctttccaaagtagtgtttgacaagcttaaactgcaatttgattgtgctgcttttgttcctgtcggtcaaaaccctgaaatcaagaaagtcctgaaggacatcctagttgaacttaacaaggacaagtacatgtcatttgatgtaacaacagtaaatgaaaggcatatgattaatgagcttcgagaataccttgacaataggaggtaagtgtgtagtaccctccaatatttttgcttttcatgatgaacttattctcatggttgcaatagctgtagacctttatctgtattactggtatatataactttttctatatttctttaatAaaaaaagaatgaaaatgttgcatagatcaggaaaacagaaaatgcaacgaattctaatgttaattgcagaacaggaaaaatatatttaactatctaactacattaatccactcgttgctagtgccagagaccaatttgatctaaaaccctttgattcaatagacttaaataataagatgagaattatgtttgcacacaaatgtcttgggcactcatattgcttcagttttagaaaatagtaattaaataatctcttatgtatatatcagtacagtttatcatttcactaa
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| CDS seq | atggagttcgccacaggggcaatgggcacgctcctccccaagctggtggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggaggggataacattcctcatagctgagctcaagagcatacaagcagcacttgagaaggtctcaaaggtgccgctagaccaacttgacgagcaaaccaagatctgggcttgggacattagggagttgtcttatgacattgaggacaacattgataccttcatgatacgtgtggatggtcttgagccagccaagaaacagaatttaacatggttaattgacaagtgccacaaatcgttgtccaagataaagatccgacacaaaatagccaatgaaatcaaagatatcaagagccaagtcagggaggtgatggaacgacgtgataggtacaagattgatgatgtcgctactattcctccaacatttgtggatcctcgcatcttgacattatatgagaatgtcaccaagcttgttggggttgataaggcaagtgatgatctaatgaagaggttgtctgtgggggatgaggcgcccaagaagctcaagatggtctctgttgttggaattggaggattgggcaagacaactctttccaaagtagtgtttgacaagcttaaactgcaatttgattgtgctgcttttgttcctgtcggtcaaaaccctgaaatcaagaaagtcctgaaggacatcctagttgaacttaacaaggacaagtacatgtcatttgatgtaacaacagtaaatgaaaggcatatgattaatgagcttcgagaataccttgacaataggagtttatcatttcactaa
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| Protein seq | MEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMIRVDGLEPAKKQNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRSLSFH |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019020 | OsLima_11g0019020.01 | Chr11 | 24407655 | 24409903 | + | NAM | ||
| CDS seq | atggagttcgccacaggggcaatgggcacgctcctccccaagctggtggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggaggggataacattcctcatagctgagctcaagagcatacaagcagcacttgagaaggtctcaaaggtgccgctagaccaacttgacgagcaaaccaagatctgggcttgggacattagggagttgtcttatgacattgaggacaacattgataccttcatgatacgtgtggatggtcttgagccagccaagaaacagaatttaacatggttaattgacaagtgccacaaatcgttgtccaagataaagatccgacacaaaatagccaatgaaatcaaagatatcaagagccaagtcagggaggtgatggaacgacgtgataggtacaagattgatgatgtcgctactattcctccaacatttgtggatcctcgcatcttgacattatatgagaatgtcaccaagcttgttggggttgataaggcaagtgatgatctaatgaagaggttgtctgtgggggatgaggcgcccaagaagctcaagatggtctctgttgttggaattggaggattgggcaagacaactctttccaaagtagtgtttgacaagcttaaactgcaatttgattgtgctgcttttgttcctgtcggtcaaaaccctgaaatcaagaaagtcctgaaggacatcctagttgaacttaacaaggacaagtacatgtcatttgatgtaacaacagtaaatgaaaggcatatgattaatgagcttcgagaataccttgacaataggagtttatcatttcactaa
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| Protein seq | MEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMIRVDGLEPAKKQNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRSLSFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.831603 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588600 | RBH | 7.568878 | 7.147371 | 7.533903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37759 | RBH | 4.759823 | 3.824884 | 1.701320 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018720 | RBH | 1.563838 | 3.608141 | 4.240610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018890 | SBH | 0.083474 | 0.000000 | 0.872841 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018670 | SBH | 0.0 | 0.000000 | 2.007686 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018430 | SBH | 0.0 | 0.008935 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018700 | SBH | 1.567390 | 3.916554 | 13.040835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | SBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019230 | SBH | 0.065155 | 0.275563 | 1.610033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | SBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019070 | RBH | 0.029859 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019220 | SBH | 0.039728 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018680 | RBH | 22.926207 | 17.584740 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018560 | SBH | 0.187229 | 1.704459 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018730 | SBH | 0.222103 | 2.844661 | 3.268044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018960 | RBH | 0.407940 | 8.649183 | 0.900061 |
