Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0588600 | OGI:11065160 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:22328967-22333982 | ||||||||
| Gene Symbol | OsSTA260, XA39, Xa39, RYMV3, OsRYMV3 | ||||||||||
| DNA seq | ACTCACTCCAAATCCTGAGTAGTCCATGGCGACTCCACCCACCTGAGCAGAAAGATCTCCTCCACCAGCAGCAGCAGCAGCAGCATCAGCCAAGAGCAGCAAGAAGCCAAGAACAAGAGCTTGGCTCTCCAATTCTTTTGCAAGGTCAGCTGCATTCGATTCAAGTGTACTCCCCCCTCTACTTTGCGGTTGCAGTTTGTAGGTGAACACTTTTCTGTCCTGAGTTGTTAGGCATCTGCAAGGACGTCTGAAACATTTGGAGAGAACACAACAATTAATCTGGGTAGACTGTGTTTTTATTGTGTAAAACTGGGAAGGAAACAAATACTACCAGATCTGAACAAACTATGTAGGAACTGGTCATCTGATAGTTGTGTCTGTCAGAAGATTTGGGGATTAACGGTTACTATTGACTTAGCTCAAAGAGCATATAAATGTGTACAAGATAAGAGAGAAATCCATAATACCCTCAATACTCTTATCAGTGTCTGGTGAGAGTTAAAGTTACAGAGGATGCCACAATCATCTTCTCTTTCTGCATTTGAATGAACATCTGAAACAGCTATATACAATTGAAGAAATTTGTGCTTTGTTGTGACTCTATGAGATCTTGACGCGATTCATTCGGATCCTGAATTATTGTTGTTAGTCCTTAACAAATACTATTGTTGTTACTTACAGATATTGAGTGAGTTTGGCTAGCAAGGATATAGACCTGACTACCTAATAACTGTATTCTGTCCTCTATTTAATAGCTTCAGCAGTTTCAACGATTATTGAGTTTCGCTTTCTTTCAAAACTCTGCCTTTATGTGTAAACATGCTTCGCCAGCTCTTTTGCCAAAATTTCCCATCCTTCAATCCTTGACTGCTAACAGATTTCTTATATGCTTTTTCATTCCAGCAGTGCTTCTCAAAATGGTTTCATGTGTGAACCGAGGCAGCTGTCTGGTGGTGAACAGCACCATATAATCATCACAATAAACAGAGAGGAGGGGGGTGGGGCGTAGTAAACCATCAGGAATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACATAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGTAAGTGTGTAGTACCCTCCAATATTTTTGCTTTTCATGATGAACTTATTCTCATGGTTGCAATAGCTGTAGACCTTTATCTGTATTACTGGTATATATAACTTTTTCTATATTTCTTTAATAAAAAAAGAATGAAAATGTTGCATAGATCAGGAAAACAGAAAATCTAACGAATTCTAATGTTAATTGCAGAACAGGAAAAATATATTTAACTATCTAACTACATTAATCCACTCGTTGCTAGTGCCAGAGACCAATTTGATCTAAAACCCTTTGATTCAATAGACTTAAATAATAAGATGAGAATTATGTTTGCACACAAATGTCTTGGGCACTCATATTGCTTCAGTTTTAGAAAATAGTAATTAAATAATCTCTTATTTATATATCAGTACAGTTTATCATTTCACTAATCCATGACCCTTCTATTCTCATGGGGATAGGTACTTGATTGTTATTGATGACGTATGGGAGACATCAAAATGGAACATTATTAAATGTGCTTTGATTGATAGTAATCGTGGAAGTAGAGTAATCATAACAACTCGTATTTATCAAGTTGCTAATGAAGCTGCTGAAGAATTTGGTGGTGTTTACATGATGGAACCACTTTCTGATGATAACTCAAAAAAGTTATTCTACAATAGAATATTTGGTGTTGCCTGCAGTAGTTCAACTGGTAATCAATCGGTTGAGGCAACCAAAAAGATCTTACATAAATGTGGTGGCATACCACTATCTATAATTGCAATAGCTAGTTTGTTGGTTGATAAACCAACAGGAGACTGGTCTATAATTTATGACTCTATAGGTTTTGGGACTGGAGATCGAAATGAGGCGGTTCAGAACACAAGGAAGATATTGTCTTTTAGCTACTATCACTTACCCTCATACCTAAAGACTTGTATGTTGTACCTAAGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGCCATTATTTGAGGTCGGCGAGAGGTACTTTATTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAATGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTTAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTCTCCGAGCTGCGACTTGACGTGGTAGCCATGGAAGCACGGGACCTGGACATGCTTGCAAGGATGCCAGCACTCCGCACACTCTGCCTGAGAACCCAGGCGAGATTTTCATGGACAGTTGGTGGTGCCGGACTGTTTCCGAACCTGAGATTCTGTAGGATGGACATAGCACTCACATTTCTTCAAGGAGCCATGCCGATGCTCATGAAGCTTCAATTATGGCTGTGGGCGTCTGAATATTGTGCCGCCACTGACGTTGGATTGGGGCACCTCCCTCTGCTCAATCGCGTCGAAGTTATCCTCCACTGCTGCGATGCGACTACCAGGCAGGTGGAGGAAGCAGAGGCGGCGTGGAGGCACATGGTGAATTCTCACCCGAACCGTCCCGCCATTCGTGTGTCCCGACTTGAAGAGGTATGGTTGGTTTGGTTAATCATGATTAATCAATTGGTTAGTTCACATTCCCCTACCTACACGCACGCCTCCCCACTTCTGACTGCCCTCCAAATTCTGTAACCAATCAGCTTTACTTGTTCTCAATTGATGTATTTCGTTCCTCAGTTCATATCGCTCTCGCACTTTGTTTTTCAGTACCGGATGAAAGGAGATGAAGATAATGATGATGAGGAGATTTCAGCTAAGGATCACGTTGACGGAAATTGTGACGATGGGAATTCAGCATATACGGACCAAGAGGTGCTGCGCTTGCGCCTGCCATGCATAACTATTCGATCCTGGTTGCATGATTAATTACATGCTCTTGGTTACTGACCGGAGGTTAATTAGTCGCCTGTTCTAGCCGGACAATGATTTAGCCAAAGAGGAGGAAGAGGAGGAGGCTACGAACCAATCTTGAACCGGATCTCTTCACTCATTCGGTCATGCTTTCAGGTACACATGTACCAAAGTTGCACATCAAAATCTTCATGACATTCTTCAACTTTAATCATACGCTTATCTCTAACTTTTATTCCCGGCTGTAATTAAACAGCGGCAGCTGCAGGGCAAGGAGAAGAATAAAAGGGAGAAGAGTAGAGCGGAATTGAAGAGAAACTCATCTCCTTCGCTGGGCCTTTTTTTTTATTTTTTTGTTGCTGTTGGTTTTCTTTCCCTGTTTTTTCTCAAGAATTTATATAGTGTGGTTTGTAATAATGGTTGTCTCGGTTACAATAAGGCCCAAGTAGGCTCAGACAGAAATTCCGAGCATATTGGCCGCT
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| CDS seq | ATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACATAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGTAA
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| Protein seq | MEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMICVDGLEPAKKHNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRR |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0588600 | OsNip_11t0588600-01 | Chr11 | 22328967 | 22333982 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACATAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGTAA
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| Protein seq | MEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMICVDGLEPAKKHNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0588600 | OsNip_11t0588600-02 | Chr11 | 22328968 | 22333980 | + | IsoSeq | ||
| CDS seq | ATGATAACTCAAAAAAGTTATTCTACAATAGAATATTTGGTGTTGCCTGCAGTAGTTCAACTGGTAATCAATCGGTTGAGGCAACCAAAAAGATCTTACATAAATGTGGTGGCATACCACTAT |
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| Protein seq | MITQKSYSTIEYLVLPAVVQLVINRLRQPKRSYINVVAYHY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 22329873 | 22333179 | + | OsNip_11t0588600-01 | OsNip_11t0588600-01,OsNip_11t0588600-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.568878 | 7.147371 | 7.533903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588400 | RBH | 0.531363 | 0.225563 | 1.781642 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37759 | RBH | 4.759823 | 3.824884 | 1.701320 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018720 | RBH | 1.563838 | 3.608141 | 4.240610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018890 | SBH | 0.083474 | 0.000000 | 0.872841 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018670 | SBH | 0.0 | 0.000000 | 2.007686 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018430 | RBH | 0.0 | 0.008935 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018700 | SBH | 1.567390 | 3.916554 | 13.040835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | SBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019230 | SBH | 0.065155 | 0.275563 | 1.610033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | SBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019020 | RBH | 0.831603 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019220 | RBH | 0.039728 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018680 | RBH | 22.926207 | 17.584740 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018560 | SBH | 0.187229 | 1.704459 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018730 | SBH | 0.222103 | 2.844661 | 3.268044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018960 | RBH | 0.407940 | 8.649183 | 0.900061 |
