Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0016250 | OGI:10048420 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:21034851-21036394 | ||||||||
| Gene Symbol | Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4 | ||||||||||
| DNA seq | atggaagctagaaagattttcgattctatgaccaagggcctaaagcctgaaattactacctatgtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaacggtatccaccctgatcattatgttttcagcattctaatatgtgcatacgctacaagggaaagtagatcaggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagttataggcatactttgcaagtcaggcagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagccctggcaacattgtttataactccctaattcatggtttgtgcacctgtaacAaatgggagagggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgagctgatggtaCGtattggtgtgaagcccaatgtcattacctacaatactcttatcaatggatattgcttggcaggtaagatggatgaagcaatgaagttactttctggcatggtctcagttGggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtagatggaagacgcgttagttctttttaaggagatggagagcagtggtgttagtcctgatattattacgtatacataattctgcaggtttatttcaaaccagaagaactgctgctgcaaagactctatgttaggattaccgaaagtggaacgcgattgaacttagcacatacaacataatccttcatggactttgcaaaaacaactcactgatgatgcactcagatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacattatgattgtgcattgcttaaagttggcagaaatgatgaagccaagatttgtttttgctttcctcgtctaacggtttagtgccgaattattggacgtacagttgatggctgaaaatattataggacaggggttctagaaaattggatcactctttcttcatggaggacaatggctgtactttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatattataggtttctccctgAaaaatacaagtcctttatagaatctttgagctgctgAagcattttgcagctttgaaattctgtgttGgaattcttttctcctacagtcctattagaggagggatcttctctgtatGtgtaaatagcgaggtatgtatgccacctctCcgaattatttttactgtggttcctagActgtAa
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| CDS seq | atggaagctagaaagattttcgattctatgaccaagggcctaaagcctgaaattactacctatgggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagttataggcatactttgcaagtcaggcagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagccctggcaacattgtttataactccctaattcatggtttgtgcacctgtaacAaatgggagagggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgagctgatggtaCgtaagatggatgaagcaatgaagttactttctggcatggtctcagttGggttgaaacctaatactgtttatttcaaaccagaagaactgctgctgcaaagactctatagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttcctttcctattagaggagggatcttctctgtatGtgtaaatagcgaggtatgtatgccacctctCcgaattatttttactgtggttcctagActgtAa
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| Protein seq | MEARKIFDSMTKGLKPEITTYGYATKGALVEMHGLLDLMAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRKMDEAMKLLSGMVSVGLKPNTVYFKPEELLLQRLYRGEITRAGTYLSMIDEKHFSLEASTASFPIRGGIFSVCVNSEVCMPPLRIIFTVVPRL |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0016250 | OsLaMu_10g0016250.02 | Chr10 | 21034851 | 21036251 | + | NAM | ||
| CDS seq | atggaagctagaaagattttcgattctatgaccaagggcctaaagcctgaaattactacctatgtaccctgcttcagggggaaagtagatcaggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagttataggcatactttgcaagtcaggcagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagccctggcaacattgtttataactccctaattcatggtttgtgcacctgtaacAaatgggagagggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgagctgatggtaCgtaagatggatgaagcaatgaagttactttctggcatggtctcagttGggttgaaacctaatactgtttatttcaaaccagaagaactgctgctgcaaagactctatagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatattataggtttctccctgAaaaatacaagtcctttatagaatctttgagctgctgA
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| Protein seq | MEARKIFDSMTKGLKPEITTYVPCFRGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRKMDEAMKLLSGMVSVGLKPNTVYFKPEELLLQRLYRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFLPEKYKSFIESLSC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0016250 | OsLaMu_10g0016250.01 | Chr10 | 21034851 | 21036394 | + | NAM | ||
| CDS seq | atggaagctagaaagattttcgattctatgaccaagggcctaaagcctgaaattactacctatgggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagttataggcatactttgcaagtcaggcagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagccctggcaacattgtttataactccctaattcatggtttgtgcacctgtaacAaatgggagagggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgagctgatggtaCgtaagatggatgaagcaatgaagttactttctggcatggtctcagttGggttgaaacctaatactgtttatttcaaaccagaagaactgctgctgcaaagactctatagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttcctttcctattagaggagggatcttctctgtatGtgtaaatagcgaggtatgtatgccacctctCcgaattatttttactgtggttcctagActgtAa
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| Protein seq | MEARKIFDSMTKGLKPEITTYGYATKGALVEMHGLLDLMAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRKMDEAMKLLSGMVSVGLKPNTVYFKPEELLLQRLYRGEITRAGTYLSMIDEKHFSLEASTASFPIRGGIFSVCVNSEVCMPPLRIIFTVVPRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497300 | SBH | 0.203808 | 0.658216 | 0.377032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35436 | SBH | 0.338377 | 0.442807 | 0.161691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016060 | RBH | 0.176219 | 1.502282 | 1.657409 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016300 | SBH | 0.047217 | 0.0 | 0.786980 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015690 | SBH | 0.000000 | 0.000000 | 4.637260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015870 | SBH | 0.063017 | 0.018916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | RBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | RBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015580 | SBH | 0.058650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | RBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015840 | SBH | 0.141397 | 0.0 | 0.060239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016240 | SBH | 0.056753 | 0.650219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | SBH | 0.771048 | 7.247159 | 6.238315 |
