Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0012270 | OGI:02029290 | 11/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:10352491-10355808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacttttcgaagattgtgggggctattaatggcatcaatgagatttccactttatgtaaaatggtcaaagatatcattaaatcttgctggagtggcatacgggagcaggagctgcaagacaaagtaatgaagttggagaatgacttggaacgtctcagagatattcttcctgcaatgtacaacctcattgatcgagcggaatggacgatccacaaagaccatgtgccagagcttcttctgaaactcaaggatgcagtttatgatgctgaggaccttcttgatgagttgaaatggcatgaactgaaggtggccatggagggctccgcaaacaaatctcctcttattgacttccttgatagtgtcattcaaggtagtttcaacaaagtgagtggtacctatgaaaaactgaataatgtttctagtctgctggagaagatggggttacatgaagttacacaacactttgacaaatccttcaggcccgagactacctctttcccaactgaaacagaaatatttggtcgtgacaatgaattggagcaggtgatgcaatcgcttggagtacctgctaaaggtagccgggtcctttccaaacgcaagaaaccaagcagtgcaattaatgcattaccaagcacatcaaaaacaaaacaacataacggtacacaaatgagtgatgaatcaggaatcacatgtattcctgttctgcctatatatggaattgggggtgttggaaagaccactttggcccagcatatctgccacgattcacgggtcatgtctcactttgacccgattatttggatttgtgtttcagatgactttgatgtgaagaggttaactaaagaagccatacaatcctgttctacaaaagaagctgataatttggattatcttcagcgtgctctttcagaagaagtgatgaacaaaaggttattgatcatacttgatgacatgtggggtgatgtcttgagggagagtggacactgttggaagaggttttgtgcacctttgacgaatgcgctacaaggaagtatgatgttagtcaccactagatctccagatgttgctcgtgaggtgcaaacaatggagcccatccgattagaaggattgcaggatgatgtcttttgggatttcttcaaattatgtgcatttggatctaagaattctgaaaattacccagagttagtgcacatcggtaaaagcatagtccaaaagttgaagggtgtacctttggccgccaaaactctaggacgcctattaagaatgagccttgacactgaatactggaataggatactaaaaagtgaactatgggagctgaaacaaaataatactgaaattttgccagcgcttagattgagctacctgtatttaccaacccacttgaagagatgcttctcattctgtgctgtttacccaaaagatcacaaattcgaagaggataatttagctgaaatttggattgcagaaggctttgtgcaacctgaaggtaacactctaattctagatactggcaaacagtactttgaagaccttgtaaaccggtctttctttcagagtgttggtggtaataaacatgtaatccatgatctgttgcatgacatggcacaactagtttcaaaggatgactgcttcattttaaaagacaaggatgattttgagaaggttcctccgagtgttcgtcatctgttcgtactccctagcatagcctttgattgtactcagttgctgagcctatgtaagcacacaaagttgcgcactctactgtgctacaggtctttacagaagcaaagtctagcttctgttatggaccattggtgtagtaaacttcagcatatgcgcgtggttttgtgtgcccacacaaaggagctaccgaagagtattgggaaattgaagcatctacggtacctggaaatctccggagcttgtcctttcaaaagccttccctcggagttatgtcacctacataatttgcagattttttcagctcgaaaatgcaaattagaaagcttgcccggtgacttcagtaagctatgcaatttacagaggttcgaatcatgtggatttttaactctcccaaatggagaaagtcattttgatgcatccactgggcagggagtcggacttacattgatgaagaacgtgaaccaaatttgtggagtgacgataaataatcttggtgcaataagcaaggatattgcagcagaaagtgcgataaagaacaagaaaaatcttgacagactgaacttgaaatggtcttctgtgagatcgcaagaccataatgacatcgaggttcttcaagtcctaattcctcctaccagtctcaagtgtctgaccctctatggttatctaggtcaatctcttccaaattggtttcatcctcataatctgccaagcttaaaatcccttgagtttcatgattgtcatagactttgtagcttaccattttatggtatatcaccaccgtgcatcaacctaaatgaggtacccgaggttccaattgagaacggtatgggtagcattggcgtattctcatccctggtcgacctaaagattgtgaagtgcgattacttatcaaacctcgacaaatttatacaaccagcttgtataccggctatcaagcgaatcacattacaaagattaacatacacaaagacaaaggtattgcctctaccaattggtaaatttgattgcctcgaagaattggacgtggctggttaccagatattcaatgcttcagaaagtctgtccatgcgcactctcaaggagctcaagctatgcaattctggggacctcccatgcttttttgagttcccctcccttaccaacatgttcttagtcgtcttgcctgtaacgtccattccactacgagtgtggtgcagtaaccttccagctctacttcgattaaaaatttatagctgtgcgaaccttgaatttattggggaatcagtcttcactggcaatcgtcctcaaagagacagttgcagcactacaacattcgcatcccttacttccctagaaatttgtggctgcgaaaagctgacaagcattgatgacctcgtaacgcctgagtatcttcctgctattgagaaaattgatgttagctcttgtgtcaagctattgtccctgccaggtgaaagatttgggaatttctcagctctaaagcatctgcgtatttcttattgtggaaaactcaaatggaagggacttgttttaccatcgaccctccaaagcctctgcttaagttattgtggggatatctctccctgggttcccagttgcctggagaaccttgcctccttggtgcgcctgtga
More
|
||||||||||
| CDS seq | atggacttttcgaagattgtgggggctattaatggcatcaatgagatttccactttatgtaaaatggtcaaagatatcattaaatcttgctggagtggcatacgggagcaggagctgcaagacaaagtaatgaagttggagaatgacttggaacgtctcagagatattcttcctgcaatgtacaacctcattgatcgagcggaatggacgatccacaaagaccatgtgccagagcttcttctgaaactcaaggatgcagtttatgatgctgaggaccttcttgatgagttgaaatggcatgaactgaaggtggccatggagggctccgcaaacaaatctcctcttattgacttccttgatagtgtcattcaaggtagtttcaacaaagtgagtggtacctatgaaaaactgaataatgtttctagtctgctggagaagatggggttacatgaagttacacaacactttgacaaatccttcaggcccgagactacctctttcccaactgaaacagaaatatttggtcgtgacaatgaattggagcaggtgatgcaatcgcttggagtacctgctaaaggtagccgggtcctttccaaacgcaagaaaccaagcagtgcaattaatgcattaccaagcacatcaaaaacaaaacaacataacggtacacaaatgagtgatgaatcaggaatcacatgtattcctgttctgcctatatatggaattgggggtgttggaaagaccactttggcccagcatatctgccacgattcacgggtcatgtctcactttgacccgattatttggatttgtgtttcagatgactttgatgtgaagaggttaactaaagaagccatacaatcctgttctacaaaagaagctgataatttggattatcttcagcgtgctctttcagaagaagtgatgaacaaaaggttattgatcatacttgatgacatgtggggtgatgtcttgagggagagtggacactgttggaagaggttttgtgcacctttgacgaatgcgctacaaggaagtatgatgttagtcaccactagatctccagatgttgctcgtgaggtgcaaacaatggagcccatccgattagaaggattgcaggatgatgtcttttgggatttcttcaaattatgtgcatttggatctaagaattctgaaaattacccagagttagtgcacatcggtaaaagcatagtccaaaagttgaagggtgtacctttggccgccaaaactctaggacgcctattaagaatgagccttgacactgaatactggaataggatactaaaaagtgaactatgggagctgaaacaaaataatactgaaattttgccagcgcttagattgagctacctgtatttaccaacccacttgaagagatgcttctcattctgtgctgtttacccaaaagatcacaaattcgaagaggataatttagctgaaatttggattgcagaaggctttgtgcaacctgaaggtaacactctaattctagatactggcaaacagtactttgaagaccttgtaaaccggtctttctttcagagtgttggtggtaataaacatgtaatccatgatctgttgcatgacatggcacaactagtttcaaaggatgactgcttcattttaaaagacaaggatgattttgagaaggttcctccgagtgttcgtcatctgttcgtactccctagcatagcctttgattgtactcagttgctgagcctatgtaagcacacaaagttgcgcactctactgtgctacaggtctttacagaagcaaagtctagcttctgttatggaccattggtgtagtaaacttcagcatatgcgcgtggttttgtgtgcccacacaaaggagctaccgaagagtattgggaaattgaagcatctacggtacctggaaatctccggagcttgtcctttcaaaagccttccctcggagttatgtcacctacataatttgcagattttttcagctcgaaaatgcaaattagaaagcttgcccggtgacttcagtaagctatgcaatttacagaggttcgaatcatgtggatttttaactctcccaaatggagaaagtcattttgatgcatccactgggcagggagtcggacttacattgatgaagaacgtgaaccaaatttgtggagtgacgataaataatcttggtgcaataagcaaggatattgcagcagaaagtgcgataaagaacaagaaaaatcttgacagactgaacttgaaatggtcttctgtgagatcgcaagaccataatgacatcgaggttcttcaagtcctaattcctcctaccagtctcaagtgtctgaccctctatggttatctaggtcaatctcttccaaattggtttcatcctcataatctgccaagcttaaaatcccttgagtttcatgattgtcatagactttgtagcttaccattttatggtatatcaccaccgtgcatcaacctaaatgaggtacccgaggttccaattgagaacggtatgggtagcattggcgtattctcatccctggtcgacctaaagattgtgaagtgcgattacttatcaaacctcgacaaatttatacaaccagcttgtataccggctatcaagcgaatcacattacaaagattaacatacacaaagacaaaggtattgcctctaccaattggtaaatttgattgcctcgaagaattggacgtggctggttaccagatattcaatgcttcagaaagtctgtccatgcgcactctcaaggagctcaagctatgcaattctggggacctcccatgcttttttgagttcccctcccttaccaacatgttcttagtcgtcttgcctgtaacgtccattccactacgagtgtggtgcagtaaccttccagctctacttcgattaaaaatttatagctgtgcgaaccttgaatttattggggaatcagtcttcactggcaatcgtcctcaaagagacagttgcagcactacaacattcgcatcccttacttccctagaaatttgtggctgcgaaaagctgacaagcattgatgacctcgtaacgcctgagtatcttcctgctattgagaaaattgatgttagctcttgtgtcaagctattgtccctgccaggtgaaagatttgggaatttctcagctctaaagcatctgcgtatttcttattgtggaaaactcaaatggaagggacttgttttaccatcgaccctccaaagcctctgcttaagttattgtggggatatctctccctgggttcccagttgcctggagaaccttgcctccttggtgcgcctgtga
More
|
||||||||||
| Protein seq | MDFSKIVGAINGINEISTLCKMVKDIIKSCWSGIREQELQDKVMKLENDLERLRDILPAMYNLIDRAEWTIHKDHVPELLLKLKDAVYDAEDLLDELKWHELKVAMEGSANKSPLIDFLDSVIQGSFNKVSGTYEKLNNVSSLLEKMGLHEVTQHFDKSFRPETTSFPTETEIFGRDNELEQVMQSLGVPAKGSRVLSKRKKPSSAINALPSTSKTKQHNGTQMSDESGITCIPVLPIYGIGGVGKTTLAQHICHDSRVMSHFDPIIWICVSDDFDVKRLTKEAIQSCSTKEADNLDYLQRALSEEVMNKRLLIILDDMWGDVLRESGHCWKRFCAPLTNALQGSMMLVTTRSPDVAREVQTMEPIRLEGLQDDVFWDFFKLCAFGSKNSENYPELVHIGKSIVQKLKGVPLAAKTLGRLLRMSLDTEYWNRILKSELWELKQNNTEILPALRLSYLYLPTHLKRCFSFCAVYPKDHKFEEDNLAEIWIAEGFVQPEGNTLILDTGKQYFEDLVNRSFFQSVGGNKHVIHDLLHDMAQLVSKDDCFILKDKDDFEKVPPSVRHLFVLPSIAFDCTQLLSLCKHTKLRTLLCYRSLQKQSLASVMDHWCSKLQHMRVVLCAHTKELPKSIGKLKHLRYLEISGACPFKSLPSELCHLHNLQIFSARKCKLESLPGDFSKLCNLQRFESCGFLTLPNGESHFDASTGQGVGLTLMKNVNQICGVTINNLGAISKDIAAESAIKNKKNLDRLNLKWSSVRSQDHNDIEVLQVLIPPTSLKCLTLYGYLGQSLPNWFHPHNLPSLKSLEFHDCHRLCSLPFYGISPPCINLNEVPEVPIENGMGSIGVFSSLVDLKIVKCDYLSNLDKFIQPACIPAIKRITLQRLTYTKTKVLPLPIGKFDCLEELDVAGYQIFNASESLSMRTLKELKLCNSGDLPCFFEFPSLTNMFLVVLPVTSIPLRVWCSNLPALLRLKIYSCANLEFIGESVFTGNRPQRDSCSTTTFASLTSLEICGCEKLTSIDDLVTPEYLPAIEKIDVSSCVKLLSLPGERFGNFSALKHLRISYCGKLKWKGLVLPSTLQSLCLSYCGDISPWVPSCLENLASLVRL |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0012270 | OsLaMu_02g0012270.01 | Chr02 | 10352491 | 10355808 | + | NAM | ||
| CDS seq | atggacttttcgaagattgtgggggctattaatggcatcaatgagatttccactttatgtaaaatggtcaaagatatcattaaatcttgctggagtggcatacgggagcaggagctgcaagacaaagtaatgaagttggagaatgacttggaacgtctcagagatattcttcctgcaatgtacaacctcattgatcgagcggaatggacgatccacaaagaccatgtgccagagcttcttctgaaactcaaggatgcagtttatgatgctgaggaccttcttgatgagttgaaatggcatgaactgaaggtggccatggagggctccgcaaacaaatctcctcttattgacttccttgatagtgtcattcaaggtagtttcaacaaagtgagtggtacctatgaaaaactgaataatgtttctagtctgctggagaagatggggttacatgaagttacacaacactttgacaaatccttcaggcccgagactacctctttcccaactgaaacagaaatatttggtcgtgacaatgaattggagcaggtgatgcaatcgcttggagtacctgctaaaggtagccgggtcctttccaaacgcaagaaaccaagcagtgcaattaatgcattaccaagcacatcaaaaacaaaacaacataacggtacacaaatgagtgatgaatcaggaatcacatgtattcctgttctgcctatatatggaattgggggtgttggaaagaccactttggcccagcatatctgccacgattcacgggtcatgtctcactttgacccgattatttggatttgtgtttcagatgactttgatgtgaagaggttaactaaagaagccatacaatcctgttctacaaaagaagctgataatttggattatcttcagcgtgctctttcagaagaagtgatgaacaaaaggttattgatcatacttgatgacatgtggggtgatgtcttgagggagagtggacactgttggaagaggttttgtgcacctttgacgaatgcgctacaaggaagtatgatgttagtcaccactagatctccagatgttgctcgtgaggtgcaaacaatggagcccatccgattagaaggattgcaggatgatgtcttttgggatttcttcaaattatgtgcatttggatctaagaattctgaaaattacccagagttagtgcacatcggtaaaagcatagtccaaaagttgaagggtgtacctttggccgccaaaactctaggacgcctattaagaatgagccttgacactgaatactggaataggatactaaaaagtgaactatgggagctgaaacaaaataatactgaaattttgccagcgcttagattgagctacctgtatttaccaacccacttgaagagatgcttctcattctgtgctgtttacccaaaagatcacaaattcgaagaggataatttagctgaaatttggattgcagaaggctttgtgcaacctgaaggtaacactctaattctagatactggcaaacagtactttgaagaccttgtaaaccggtctttctttcagagtgttggtggtaataaacatgtaatccatgatctgttgcatgacatggcacaactagtttcaaaggatgactgcttcattttaaaagacaaggatgattttgagaaggttcctccgagtgttcgtcatctgttcgtactccctagcatagcctttgattgtactcagttgctgagcctatgtaagcacacaaagttgcgcactctactgtgctacaggtctttacagaagcaaagtctagcttctgttatggaccattggtgtagtaaacttcagcatatgcgcgtggttttgtgtgcccacacaaaggagctaccgaagagtattgggaaattgaagcatctacggtacctggaaatctccggagcttgtcctttcaaaagccttccctcggagttatgtcacctacataatttgcagattttttcagctcgaaaatgcaaattagaaagcttgcccggtgacttcagtaagctatgcaatttacagaggttcgaatcatgtggatttttaactctcccaaatggagaaagtcattttgatgcatccactgggcagggagtcggacttacattgatgaagaacgtgaaccaaatttgtggagtgacgataaataatcttggtgcaataagcaaggatattgcagcagaaagtgcgataaagaacaagaaaaatcttgacagactgaacttgaaatggtcttctgtgagatcgcaagaccataatgacatcgaggttcttcaagtcctaattcctcctaccagtctcaagtgtctgaccctctatggttatctaggtcaatctcttccaaattggtttcatcctcataatctgccaagcttaaaatcccttgagtttcatgattgtcatagactttgtagcttaccattttatggtatatcaccaccgtgcatcaacctaaatgaggtacccgaggttccaattgagaacggtatgggtagcattggcgtattctcatccctggtcgacctaaagattgtgaagtgcgattacttatcaaacctcgacaaatttatacaaccagcttgtataccggctatcaagcgaatcacattacaaagattaacatacacaaagacaaaggtattgcctctaccaattggtaaatttgattgcctcgaagaattggacgtggctggttaccagatattcaatgcttcagaaagtctgtccatgcgcactctcaaggagctcaagctatgcaattctggggacctcccatgcttttttgagttcccctcccttaccaacatgttcttagtcgtcttgcctgtaacgtccattccactacgagtgtggtgcagtaaccttccagctctacttcgattaaaaatttatagctgtgcgaaccttgaatttattggggaatcagtcttcactggcaatcgtcctcaaagagacagttgcagcactacaacattcgcatcccttacttccctagaaatttgtggctgcgaaaagctgacaagcattgatgacctcgtaacgcctgagtatcttcctgctattgagaaaattgatgttagctcttgtgtcaagctattgtccctgccaggtgaaagatttgggaatttctcagctctaaagcatctgcgtatttcttattgtggaaaactcaaatggaagggacttgttttaccatcgaccctccaaagcctctgcttaagttattgtggggatatctctccctgggttcccagttgcctggagaaccttgcctccttggtgcgcctgtga
More
|
|||||||
| Protein seq | MDFSKIVGAINGINEISTLCKMVKDIIKSCWSGIREQELQDKVMKLENDLERLRDILPAMYNLIDRAEWTIHKDHVPELLLKLKDAVYDAEDLLDELKWHELKVAMEGSANKSPLIDFLDSVIQGSFNKVSGTYEKLNNVSSLLEKMGLHEVTQHFDKSFRPETTSFPTETEIFGRDNELEQVMQSLGVPAKGSRVLSKRKKPSSAINALPSTSKTKQHNGTQMSDESGITCIPVLPIYGIGGVGKTTLAQHICHDSRVMSHFDPIIWICVSDDFDVKRLTKEAIQSCSTKEADNLDYLQRALSEEVMNKRLLIILDDMWGDVLRESGHCWKRFCAPLTNALQGSMMLVTTRSPDVAREVQTMEPIRLEGLQDDVFWDFFKLCAFGSKNSENYPELVHIGKSIVQKLKGVPLAAKTLGRLLRMSLDTEYWNRILKSELWELKQNNTEILPALRLSYLYLPTHLKRCFSFCAVYPKDHKFEEDNLAEIWIAEGFVQPEGNTLILDTGKQYFEDLVNRSFFQSVGGNKHVIHDLLHDMAQLVSKDDCFILKDKDDFEKVPPSVRHLFVLPSIAFDCTQLLSLCKHTKLRTLLCYRSLQKQSLASVMDHWCSKLQHMRVVLCAHTKELPKSIGKLKHLRYLEISGACPFKSLPSELCHLHNLQIFSARKCKLESLPGDFSKLCNLQRFESCGFLTLPNGESHFDASTGQGVGLTLMKNVNQICGVTINNLGAISKDIAAESAIKNKKNLDRLNLKWSSVRSQDHNDIEVLQVLIPPTSLKCLTLYGYLGQSLPNWFHPHNLPSLKSLEFHDCHRLCSLPFYGISPPCINLNEVPEVPIENGMGSIGVFSSLVDLKIVKCDYLSNLDKFIQPACIPAIKRITLQRLTYTKTKVLPLPIGKFDCLEELDVAGYQIFNASESLSMRTLKELKLCNSGDLPCFFEFPSLTNMFLVVLPVTSIPLRVWCSNLPALLRLKIYSCANLEFIGESVFTGNRPQRDSCSTTTFASLTSLEICGCEKLTSIDDLVTPEYLPAIEKIDVSSCVKLLSLPGERFGNFSALKHLRISYCGKLKWKGLVLPSTLQSLCLSYCGDISPWVPSCLENLASLVRL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069400 | 1.657854 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0282500 | RBH | 0.162010 | 0.084188 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g18140 | RBH | 0.242170 | 0.231566 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0282500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012490 | RBH | 0.0 | 0.873837 | 0.724572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012660 | RBH | 0.064168 | 0.355739 | 0.424259 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012510 | RBH | 0.139777 | 0.0 | 0.867802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012240 | RBH | 2.157324 | 6.630253 | 4.801873 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0163500 | SBH | 0.289234 | 27.807004 | 4.1507255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0012040 | SBH | 0.0 | 0.0 | 0.151696 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0175800 | RBH | 0.364924 | 1.3956875 | 1.058471 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012620 | SBH | 0.110557 | 0.274318 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012210 | SBH | 0.0 | 2.002438 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012640 | RBH | 1.408212 | 13.718182 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0012490 | SBH | 0.000000 | 0.476903 | 0.253674 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012650 | RBH | 0.052209 | 0.295199 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012410 | RBH | 0.000000 | 0.0 | 0.280461 |
