Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0016320 | OGI:10048420 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:21755485-21761238 | ||||||||
| Gene Symbol | RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6 | ||||||||||
| DNA seq | atggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtgttagtcctgatattattacgtataacataattctgcaaggtttatttcaaaccagaagaactgctgctgcaaaagaactctatgtcaggattaccgaaagtggaatgcagattgaactttgttagatttaattggataattaatccatttaaatcaattaaatcaaataaattccaaggctcattatgctaggaattcatgtgaattcattcttctatgggatatcaatgggatgaagagttttgagaattaatccatttgattaaggaattggtaacttatatcaattaatcctaattgatggatggttgatggttgtgtAgtggaggatggttcatggctagttgatgacaattagttgctctattcctcttcctattccattggtaacttacatcaattactcttaattgattgttggttgatggttgtgtagtggaggatggttcatggctagttgatgacaattagttgctccattcctcttcctattccatgactcttactcttcatcttccattcctcttataaaatgagaatggatttgatctcccgcgagaagacacactttcatccattttcaaaagctgttgctgctacggtaatcccatcccgacgagtgtgtgcacacgcgttgggagagtaggcctccgaaaccacgcgttgctgcgacgtttgcacagacgggCgggcgatcaggtttttggggagcgcaaggcgcgactactcactgttcgtcaacatctacttcatcttcaccaacatgtcgaacactggagacaaggagaaggagactcccgtcaacaccaacggaggcaatactgcctcaaactccagcggaggaccattcttggggtataaccttattacattatttcaattagaagttttactgttaatgttcatcgcaatgtcaacattgtgtcattatgtgattgttgatgcttattcaacgttaagcatgctcatgttgattacattcaccactatcactggatcaaatcctattgtaaatatcatgtttattatcttgttattttggattaaaatatgccgaattatgaccaaatttccaacaaacttagcacatacaacataatccttcatggactttgcaaaaacaaactcactgatgatgcacttcgaatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacattatgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaatattataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatatcatatatttctccctgaaaaatacaagtcctttatagaatctttgagctgctgaagcattttgcagctttgaaattctgtgttggaattcttttctcctacagtccgattagaggagggatcttctctgtatgtgtaaatagcgaggtatgtatgtcacctctccgaattattttgactgtggttcctggactgtaaacaagctattatcttctggtgttgatgccagaaaaaacacaaaagtttgtcgttatctctactaacggatcataaaggggtttgtaactggagtttcaaacttaaggtatctaggcagtaggtatatattgatcctacatcttatgatcttaagatgatatccttctcattatcctctgctgaaactttagcttgaaccgtcatctacaccacaatttgagccccttagcacagagcacaacgagcaatagcttgcccttacgttcattatttagcatgcactactactaactacccaataatcaatacatcggttattaaactgTttgtacagtttaataatgtcattttatcacgttaacatatgtttcattcaacaccacaccggttttggcacagttgcaaacttgcaataacatttttactacttctccgccccataatataacaatctcgttccatactatattgctatattacgggacggatgaagtacttctttccttccaaaatataagaatctagtactagattagatattatttggattcacgaatttgattaggctatctagatttgtagtcgtatgtaatgtctaattcggtaataggttattacctctttggatggagggagtagtttttatttcgtactccctctgtttcatattataagttgttttgacttttttcttagtcaaattttattgagtttgactaaatttatagaaaaaaaattagcaacatttaagcaccacattagtttcattaaatgtagcatggAatatatttttataatatgtttgtttttttattaaaatgctactatatttttctataaatgtagccaaatttaaagaagtttgattacgaaaaaaaatcaaaatgacatataatatgaaactgaggatgtagcagactatagcaaatttaaactatgcttttattttagagcatcaccaaaagagatagcctaaatcttatcttaactaattaaaatattcataattttcctttcgtcacattaaattttcgtccgtaaatccgattgaaatccaactagacaatccaaaaaatagagaaaaagaacagaaaaaataataaaaagcacacaaatcttatctcaatcccgcgggaagctgccgatgccgccgaatccgctcgagcgccgccgccgccgctcacggggaacgatgtcgctgctatcgcacgtggtatgggagggcgccgccgccgctgcttgggagataggatatggagagagaaggaaatgtgagggagggttaggtttttccccattcgtatcttcagcgacacggaggcgatccaagctgtccatcagatcagacggctcagaacgcctccatcttcaggccgcgcatgcttgatgggccgagggaaggccggagggtcgaacaaacgtagtcagaggaggagttggaggaggtaaagtagaatttatttgcgggctgagatagtaaatggactgaaaatggcccatagagaaattgggaattttatttaaataaatgttgaaaaggtgtttatattatcaaaattagaaattaagctccgaaaattttaaaaaatattcaaagagcattattaatcatgattaatttaataaaaattaaatccaaccatatcatattatttcacggcgcgcagtaggaaaatgcgcagctgttgtcgcttacggtgggagagaagggacattgtttattttcagaactatcttttataactcccatggaactttaaaataaatataatcattattatagcattagtttttttctgtcttttttttccccaagagcgccgcgcagaagagatcgatcgcgatctccctgccccgacgtcgccggccgatctctcattctctccacgccctgctcgtcgccgatctcctacaccatccctgccatctcctccttcccctcccctctatcctccactggtgccgcccacctctccgtataagacaaactgcgttgcggcgttggtttccgccggcgctgctgctgcacctgtcagctagggcgggcatggcgcgccgcgccgcttcccgcgctgttggcgcccttcgctcggacggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagctggcgccgacgaggtaactcccgacttgtgcacctacggcattctcatcggttgctgctgccgcgcgggccgcttggacctcggtttcgcggccttgggcaatgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggttgcataccaaatgtcttctcctacaataatcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagttgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgctggaccgggggattttacctgatgttgtgacctacagctctattattgctgcgttatgcaagggtcaagctatggacaagccatggaggtacttaccacgatggttaagaatggtgtcatgcctgattgcatgacatataatagttatttcttgaaatgttggatcgaggcatttgtctggacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcctgatatcattacatacagtacactcatcgatggatattgcttggcaggtaagatggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtgttagtcctgatattattacgtataacataattctgcaaggtttatttcaaaccagaagaactgctgctgcaaaagaactctatgtcaggattaccgaaagtggaacgcagattgaacttagcacatacaacataatccttcatggactttgcaaaaacaaactcactgatgatgcacttcagatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacattatgattgatgcattgcttaaagttggcagaaatgatgaagCcCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatattataggtttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| CDS seq | atggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtcttgaggctaggactttcaacattatgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaatattataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttggcgggcatggcgcgccgcgccgcttcccgcgctgttggcgcccttcgctcggacggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagctggcgccgacgaggtaactcccgacttgtgcacctacggcattctcatcggttgctgctgccgcgcgggccgcttggacctcggtttcgcggccttgggcaatgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggttgcataccaaatgtcttctcctacaataatcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagttgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgctggaccgggggattttacctgatgttgtgacctacagctctattattgctgcgttatgcaagggtcaagctatggacaagccatggagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcctgatatcattacatacagtaagatggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtgttagtcctgatattattacgtataacataattctgcaaggtttatttcaaaccagaagaactgctgctgcaaaagaactctatttggcagaaatgatgaagCcCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatattataggtttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| Protein seq | MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLAGMARRAASRAVGALRSDGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYLAEMMKPKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFLPEKYKSFIESLSC |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0016320 | OsKeNa_10g0016320.01 | Chr10 | 21755485 | 21761238 | + | NAM | ||
| CDS seq | atggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtcttgaggctaggactttcaacattatgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaatattataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttggcgggcatggcgcgccgcgccgcttcccgcgctgttggcgcccttcgctcggacggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagctggcgccgacgaggtaactcccgacttgtgcacctacggcattctcatcggttgctgctgccgcgcgggccgcttggacctcggtttcgcggccttgggcaatgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggttgcataccaaatgtcttctcctacaataatcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagttgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgctggaccgggggattttacctgatgttgtgacctacagctctattattgctgcgttatgcaagggtcaagctatggacaagccatggagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcctgatatcattacatacagtaagatggatgaagcaatgaagttactttctggcatggtctcagttgggttgaaacctaatactgttacttatagcactttgattaatggctactgcaaaattagtaggatggaagacgcgttagttctttttaaggagatggagagcagtggtgttagtcctgatattattacgtataacataattctgcaaggtttatttcaaaccagaagaactgctgctgcaaaagaactctatttggcagaaatgatgaagCcCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTttcaatggaggacaatggctgtactgttgactctggcatgctaaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggaaaatatcaagaatattataggtttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| Protein seq | MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLAGMARRAASRAVGALRSDGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYLAEMMKPKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYYRFLPEKYKSFIESLSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.371826 | 1.897311 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497432 | RBH | 1.063035 | 0.533988 | 2.623040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35440 | RBH | 0.438520 | 0.328626 | 0.617832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497432 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016060 | SBH | 0.176219 | 1.502282 | 1.657409 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015940 | RBH | 0.180578 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015710 | SBH | 0.315719 | 1.315855 | 7.364072 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016230 | SBH | 0.000000 | 0.077490 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015760 | SBH | 0.021628 | 0.078961 | 0.179348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | SBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015580 | SBH | 0.058650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | SBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015840 | SBH | 0.141397 | 0.0 | 0.060239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016240 | SBH | 0.056753 | 0.650219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | SBH | 0.771048 | 7.247159 | 6.238315 |
