Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0008461 | OGI:05065100 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:8381867-8382240 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taaccctcctgagggcactgttgaggtacccatcctccctcggcaaggagctctgggtgaaaaccttgtccaattccttggacggatgacgacggcgtctttcggcgtcgcaaccctcgtgagggcgtcgttttagagtattcgtgtcgtggtggtgttgttggcccggtggcgatcggtctcgcatagcgatggccggttcggtgcttggcttccctctctgtagcgtgtgtttgggcggttggcatatggttcggggcgtgtgctctggtgcacatccttcctcgacagccagctgtcgatgtaaaacttttcttgtaacatttttcttcctatcttaattacattgaatgacctccttcggtcattccagc |
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| CDS seq | accctcctgagggcactgttgaggtacccatcctccctcggcaaggagctctgggtgaaaaccttgtccaattccttggac |
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| Protein seq | TLLRALLRYPSSLGKELWVKTLSNSLD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008461 | OsKeNa_05g0008461.01 | Chr05 | 8381867 | 8382240 | + | IsoSeq | ||
| CDS seq | accctcctgagggcactgttgaggtacccatcctccctcggcaaggagctctgggtgaaaaccttgtccaattccttggac |
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| Protein seq | TLLRALLRYPSSLGKELWVKTLSNSLD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.853052 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0111101 | RBH | 0.0 | 0.0 | 0.970271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16490 | SBH | 0.692906 | 0.656954 | 0.852002 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0111101 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024310 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023900 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024940 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0372000 | RBH | 0.3100635 | 0.934851 | 1.499051 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023250 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0085900 | SBH | 0 | 0.0675565 | 0.011303 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024830 | RBH | 2.473876 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024830 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023400 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024320 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
